EY686953

Overview
NameEY686953
Unique NameEY686953
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length828
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY686953 vs. ExPASy Swiss-Prot
Match: ATL4C_ARATH (Putative RING-H2 finger protein ATL4C OS=Arabidopsis thaliana GN=ATL4C PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.201e-12
Identity = 33/77 (42.86%), Postives = 50/77 (64.94%), Query Frame = 1
Query:  256 RRLDSKVVEALPCFLFSSASSSQC-HGGETCAICLEDYQDGEKLKVLS-CKHEFHASCVDSWLTKWGTFCPVCKHDM 480
            R L+ +V+E+ P FL+S     +   GG  CAICL +++D E L+ +  C H FHA+C+D WL+ W T CPVC+ ++
Sbjct:   93 RGLEKEVIESFPTFLYSEVKGLKIGKGGVECAICLSEFEDQETLRWMPPCSHTFHANCIDVWLSSWST-CPVCRANL 168          
BLAST of EY686953 vs. ExPASy Swiss-Prot
Match: RNF13_PONAB (RING finger protein 13 OS=Pongo abelii GN=RNF13 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.568e-12
Identity = 41/131 (31.30%), Postives = 61/131 (46.56%), Query Frame = 1
Query:  148 LMVSVFSLIVVFALFAVAFITPRPWRPWPGQNQPQPRRLDSKVVEALPCFLFSSASSSQCHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKH-----------DMRNNSESNEV 507
            L++    LI++       F+  R        ++ +  RL    ++ LP   F           + CAICL++Y+DG+KL++L C H +H  CVD WLTK    CPVCK            D  ++ E NEV
Sbjct:  188 LIIVGICLILIVIFMITKFVQDR--------HRARRNRLRKDQLKKLPVHKFKKGDEY-----DVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVVPSQGDSDSDTDSSQEENEV 305          
BLAST of EY686953 vs. ExPASy Swiss-Prot
Match: RNF13_HUMAN (RING finger protein 13 OS=Homo sapiens GN=RNF13 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.568e-12
Identity = 41/131 (31.30%), Postives = 61/131 (46.56%), Query Frame = 1
Query:  148 LMVSVFSLIVVFALFAVAFITPRPWRPWPGQNQPQPRRLDSKVVEALPCFLFSSASSSQCHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKH-----------DMRNNSESNEV 507
            L++    LI++       F+  R        ++ +  RL    ++ LP   F           + CAICL++Y+DG+KL++L C H +H  CVD WLTK    CPVCK            D  ++ E NEV
Sbjct:  188 LIIVGICLILIVIFMITKFVQDR--------HRARRNRLRKDQLKKLPVHKFKKGDEY-----DVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVVPSQGDSDSDTDSSQEENEV 305          
BLAST of EY686953 vs. ExPASy Swiss-Prot
Match: RNF13_BOVIN (RING finger protein 13 OS=Bos taurus GN=RNF13 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.568e-12
Identity = 41/131 (31.30%), Postives = 61/131 (46.56%), Query Frame = 1
Query:  148 LMVSVFSLIVVFALFAVAFITPRPWRPWPGQNQPQPRRLDSKVVEALPCFLFSSASSSQCHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKH-----------DMRNNSESNEV 507
            L++    LI++       F+  R        ++ +  RL    ++ LP   F           + CAICL++Y+DG+KL++L C H +H  CVD WLTK    CPVCK            D  ++ E NEV
Sbjct:  188 LIIVGICLILIVIFMITKFVQDR--------HRARRNRLRKDQLKKLPVHKFKKGDEY-----DVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVVPSQGDSDSDTDSSQEENEV 305          
BLAST of EY686953 vs. ExPASy Swiss-Prot
Match: RNF13_RAT (RING finger protein 13 OS=Rattus norvegicus GN=Rnf13 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.048e-12
Identity = 37/108 (34.26%), Postives = 54/108 (50.00%), Query Frame = 1
Query:  148 LMVSVFSLIVVFALFAVAFITPRPWRPWPGQNQPQPRRLDSKVVEALPCFLFSSASSSQCHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCK 471
            L++    LI++       F+  R        ++ +  RL    ++ LP   F           + CAICLE+Y+DG+KL++L C H +H  CVD WLTK    CPVCK
Sbjct:  188 LIIVGICLILIVIFMITKFVQDR--------HRNRRNRLRKDQLKKLPVHKFKKGDEY-----DVCAICLEEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCK 282          
BLAST of EY686953 vs. ExPASy Swiss-Prot
Match: RNF13_MOUSE (RING finger protein 13 OS=Mus musculus GN=Rnf13 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.048e-12
Identity = 37/108 (34.26%), Postives = 54/108 (50.00%), Query Frame = 1
Query:  148 LMVSVFSLIVVFALFAVAFITPRPWRPWPGQNQPQPRRLDSKVVEALPCFLFSSASSSQCHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCK 471
            L++    LI++       F+  R        ++ +  RL    ++ LP   F           + CAICLE+Y+DG+KL++L C H +H  CVD WLTK    CPVCK
Sbjct:  188 LIIVGICLILIVIFMITKFVQDR--------HRNRRNRLRKDQLKKLPVHKFKKGDEY-----DVCAICLEEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCK 282          
BLAST of EY686953 vs. ExPASy Swiss-Prot
Match: RNF13_CHICK (RING finger protein 13 OS=Gallus gallus GN=RNF13 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.675e-12
Identity = 53/179 (29.61%), Postives = 76/179 (42.46%), Query Frame = 1
Query:  148 LMVSVFSLIVVFALFAVAFITPRPWRPWPGQNQPQPRRLDSKVVEALPCFLFSSASSSQCHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKH-----------DMRNNSESNEVKRGN*ALKSVD*DDNLASIWNQGSFHVVGMCFELHGIFNF--SSTYPE 645
            L++    LI++       F+  R        ++ +  RL    ++ LP   F           + CAICL++Y+DG+KL++L C H +H  CVD WLTK    CPVCK            +  ++ E NEV      L+       LAS+  Q      G   E H   N   SS Y E
Sbjct:  188 LIIVGICLILIVIFMITKFVQDR--------HRARRNRLRKDQLKKLPVHKFKKGDEY-----DVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVVPSQGDSDSETDSSQEENEVSENTPLLRP------LASVSTQS----FGALSESHSHQNMTESSEYEE 343          
BLAST of EY686953 vs. ExPASy Swiss-Prot
Match: ATL2G_ARATH (RING-H2 finger protein ATL2G OS=Arabidopsis thaliana GN=ATL2G PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.016e-11
Identity = 33/85 (38.82%), Postives = 54/85 (63.53%), Query Frame = 1
Query:  256 RRLDSKVVEALPCFLFSSASSSQC-HGGETCAICLEDYQDGEKLKVLS-CKHEFHASCVDSWLTKWGTFCPVCKHDMRNNSESNE 504
            R LD++ +E  P FL+S   + +   GG  CA+CL +++D E L+++  C H FHA CVD WL++  T CP+C+ D+  N + ++
Sbjct:  105 RGLDAEAIETFPTFLYSEVKAVRIGKGGVECAVCLCEFEDDETLRLMPPCCHVFHADCVDVWLSEHST-CPLCRADLVLNQQGDD 188          
BLAST of EY686953 vs. ExPASy Swiss-Prot
Match: RN167_MOUSE (E3 ubiquitin-protein ligase RNF167 OS=Mus musculus GN=Rnf167 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.327e-11
Identity = 29/68 (42.65%), Postives = 42/68 (61.76%), Query Frame = 1
Query:  337 ETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKH-------DMRNNSESNEVKRGN 519
            + CAICL++Y+DG+KL+VL C H +H+ CVD WLT+    CP+CK        D     E+ E + G+
Sbjct:  228 DVCAICLDEYEDGDKLRVLPCAHAYHSRCVDPWLTQTRKTCPICKQPVHRGPGDEEQEEETQEQEEGD 295          
BLAST of EY686953 vs. ExPASy Swiss-Prot
Match: ATL1N_ARATH (RING-H2 finger protein ATL1N OS=Arabidopsis thaliana GN=ATL1N PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.327e-11
Identity = 37/124 (29.84%), Postives = 68/124 (54.84%), Query Frame = 1
Query:  145 VLMVSVFSLIVVFALF---------AVAFITPRPWRPWPGQNQPQPRRLDSKVVEALPCFLFSSASSSQCHGGET--CAICLEDYQDGEKLKVL-SCKHEFHASCVDSWLTKWGTFCPVCKHDM 480
            +++VSVF  +  F+++          + +  P     W   N+ Q R LD+ ++E  P F +S+  + +  G E   C++CL +++D E L+++  C H FH  C+D+WL +  T CP+C+ D+
Sbjct:   68 IVLVSVFFFLGFFSVYIRRCLERVMGMDYGNPNDAGNWLATNRQQARGLDASIIETFPTFQYSTVKTLRI-GKEALECSVCLNEFEDDETLRLIPKCCHVFHPGCIDAWL-RSHTTCPLCRADL 189          
The following BLAST results are available for this feature:
BLAST of EY686953 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
ATL4C_ARATH1.201e-1242.86Putative RING-H2 finger protein ATL4C OS=Arabidops... [more]
RNF13_PONAB1.568e-1231.30RING finger protein 13 OS=Pongo abelii GN=RNF13 PE... [more]
RNF13_HUMAN1.568e-1231.30RING finger protein 13 OS=Homo sapiens GN=RNF13 PE... [more]
RNF13_BOVIN1.568e-1231.30RING finger protein 13 OS=Bos taurus GN=RNF13 PE=2... [more]
RNF13_RAT2.048e-1234.26RING finger protein 13 OS=Rattus norvegicus GN=Rnf... [more]
RNF13_MOUSE2.048e-1234.26RING finger protein 13 OS=Mus musculus GN=Rnf13 PE... [more]
RNF13_CHICK2.675e-1229.61RING finger protein 13 OS=Gallus gallus GN=RNF13 P... [more]
ATL2G_ARATH1.016e-1138.82RING-H2 finger protein ATL2G OS=Arabidopsis thalia... [more]
RN167_MOUSE1.327e-1142.65E3 ubiquitin-protein ligase RNF167 OS=Mus musculus... [more]
ATL1N_ARATH1.327e-1129.84RING-H2 finger protein ATL1N OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-031-C04-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY686953 ID=EY686953; Name=EY686953; organism=Citrus sinensis; type=EST; length=828bp
CCACGCGTCCGGGCAAGTCATGAAGGTGTAAAGGTGCATGCGATATTTGT
TTCTTTGGAAACTGGTGTGTATTTGAAGGAGCATGGTCGAGGTGAAACTG
GGGAATGCTGCATTTTTCCAGAATCTAATAGAGGAAGCTGGAGTGTGTTG
ATGGTATCTGTCTTCTCACTTATTGTGGTCTTTGCATTATTTGCCGTAGC
CTTTATTACTCCCAGGCCCTGGAGGCCTTGGCCAGGACAGAATCAGCCGC
AACCTAGAAGGTTAGATTCCAAGGTAGTGGAAGCACTTCCTTGCTTTTTG
TTCAGCTCTGCTAGTTCAAGTCAGTGTCATGGTGGAGAAACTTGTGCCAT
TTGCCTTGAGGATTACCAAGATGGGGAAAAACTCAAAGTTCTTTCCTGCA
AACATGAGTTTCATGCAAGCTGCGTGGACTCATGGCTGACTAAGTGGGGG
ACGTTCTGCCCTGTATGCAAGCATGATATGAGAAATAATAGTGAAAGTAA
TGAGGTCAAGAGAGGAAACTAGGCCTTAAAATCAGTGGATTGAGATGATA
ATTTGGCTAGCATTTGGAATCAGGGTAGTTTTCATGTTGTGGGGATGTGC
TTTGAACTTCATGGAATTTTTAACTTTTCCTCAACCTATCCCGAGGCTTG
GAGAATAATTTGCGCGCGCATACGCGACTTGAAAAGAATTATTGCGCAAA
ATTGGGGAGGGGTAGCTCGCGAAGGCCTCCCGTCCTTCGCGTCCACCAGG
GAGAAGTAGAGGGGTCGCCGGAATCTTCTCGCACTCGCTCGGGACAAGTG
TGGGAGGCGACGGAGAGGCGGCGCCGCC
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