EY686946

Overview
NameEY686946
Unique NameEY686946
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length423
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2947 contig Csv1_Contig2947:1216..1638. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY686946 vs. ExPASy Swiss-Prot
Match: CB029_RAT (UPF0760 protein C2orf29 homolog OS=Rattus norvegicus PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.104e-14
Identity = 40/44 (90.91%), Postives = 43/44 (97.73%), Query Frame = 3
Query:   18 VFLQSLIRNRIIDVKDLFIEVQAFCIEFSRIREAATLFRLLKTL 149
            VFLQSLIRN+II+V+DLFIEVQAFCIEFSRIREAA LFRLLKTL
Sbjct:  448 VFLQSLIRNKIINVQDLFIEVQAFCIEFSRIREAAGLFRLLKTL 491          
BLAST of EY686946 vs. ExPASy Swiss-Prot
Match: CB029_MOUSE (UPF0760 protein C2orf29 homolog OS=Mus musculus GN=D1Bwg0212e PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.104e-14
Identity = 40/44 (90.91%), Postives = 43/44 (97.73%), Query Frame = 3
Query:   18 VFLQSLIRNRIIDVKDLFIEVQAFCIEFSRIREAATLFRLLKTL 149
            VFLQSLIRN+II+V+DLFIEVQAFCIEFSRIREAA LFRLLKTL
Sbjct:  449 VFLQSLIRNKIINVQDLFIEVQAFCIEFSRIREAAGLFRLLKTL 492          
BLAST of EY686946 vs. ExPASy Swiss-Prot
Match: CB029_HUMAN (UPF0760 protein C2orf29 OS=Homo sapiens GN=C2orf29 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.104e-14
Identity = 40/44 (90.91%), Postives = 43/44 (97.73%), Query Frame = 3
Query:   18 VFLQSLIRNRIIDVKDLFIEVQAFCIEFSRIREAATLFRLLKTL 149
            VFLQSLIRN+II+V+DLFIEVQAFCIEFSRIREAA LFRLLKTL
Sbjct:  454 VFLQSLIRNKIINVQDLFIEVQAFCIEFSRIREAAGLFRLLKTL 497          
BLAST of EY686946 vs. ExPASy Swiss-Prot
Match: CB029_DANRE (UPF0760 protein C2orf29 homolog OS=Danio rerio GN=zgc:163002 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.104e-14
Identity = 40/44 (90.91%), Postives = 43/44 (97.73%), Query Frame = 3
Query:   18 VFLQSLIRNRIIDVKDLFIEVQAFCIEFSRIREAATLFRLLKTL 149
            VFLQSLIRN+II+V+DLFIEVQAFCIEFSRIREAA LFRLLKTL
Sbjct:  389 VFLQSLIRNKIINVQDLFIEVQAFCIEFSRIREAAGLFRLLKTL 432          
The following BLAST results are available for this feature:
BLAST of EY686946 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
CB029_RAT1.104e-1490.91UPF0760 protein C2orf29 homolog OS=Rattus norvegic... [more]
CB029_MOUSE1.104e-1490.91UPF0760 protein C2orf29 homolog OS=Mus musculus GN... [more]
CB029_HUMAN1.104e-1490.91UPF0760 protein C2orf29 OS=Homo sapiens GN=C2orf29... [more]
CB029_DANRE1.104e-1490.91UPF0760 protein C2orf29 homolog OS=Danio rerio GN=... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C2-003-031-B04-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY686946 ID=EY686946; Name=EY686946; organism=Citrus sinensis; type=EST; length=423bp
TCCGACCCACGCGTCCGGTTTTCTTACAGAGTCTAATCCGAAACAGAATA
ATTGATGTTAAGGATCTCTTCATCGAAGTCCAAGCCTTTTGCATTGAATT
CTCAAGAATTAGAGAAGCTGCAACATTATTCAGGCTTCTTAAAACCTTGG
GTTTGGAATGAATGAACCCTGAATTCATAGACAGTCCTGTCTCGAGCGAT
TCTCTCTCCTGTGTAGTATCATTTCTAAATCTTCTCTGCTTTGTAGATAG
TAACAATTTTTATTTGCACTTTCAGATATGATAGATCTCCTATAATGTTG
CCTTGCCTATGAAAAGTTAGGTACCCTTCGATGTGGAAACAATAAGGGAT
AATTTAACTTGCTTAATTGAACTAAAGCCACTTATTTGCCGTTAGCAAAA
AAAAAAAAAAAAAAAAAAAAAAA
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