EY686944

Overview
NameEY686944
Unique NameEY686944
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1076
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY686944_ssr675 microsatellite EY686944_ssr675:675..684. BLAST: Citrus ESTs to Prunus persica proteins V1
EY686944_ssr712 microsatellite EY686944_ssr712:712..727. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY686944 vs. ExPASy Swiss-Prot
Match: PSAD_NICSY (Photosystem I reaction center subunit II, chloroplastic OS=Nicotiana sylvestris GN=psaD PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.492e-19
Identity = 57/100 (57.00%), Postives = 67/100 (67.00%), Query Frame = 3
Query:  105 MGATDXASLFAPANFSTTESSAPRKQS-SSFSIRPLKHNAPRTNTIKDMADGKTETPTKEAPGGFTPPELERNTRSPIFRGSTGGMLRKAQVQEFYVITW 401
            M     ASLF PA  S  +SSAP KQS +SFS + LK        I+ MA+ +  T   EAP GFTPP+L+ NT SPIF GSTGG+LRKAQV+EFYVITW
Sbjct:    1 MAMATQASLFTPA-LSAPKSSAPWKQSLASFSPKQLKSTVSAPRPIRAMAE-EAATKEAEAPVGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITW 98          
BLAST of EY686944 vs. ExPASy Swiss-Prot
Match: PSAD2_ARATH (Photosystem I reaction center subunit II-2, chloroplastic OS=Arabidopsis thaliana GN=psaD2 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.397e-17
Identity = 59/136 (43.38%), Postives = 80/136 (58.82%), Query Frame = 3
Query:  111 ATDXASLFAPANFSTTESSAPRKQSSSFSIRPLKHNAPRTNTIKDMADGKTETPT-KEAPGGFTPPELERNTRSPIFRGSTGGMLRKAQVQEFYVITWGDS*GANN*K*PMREQP*SYKA-----RNVMKLARQKR 500
            AT  A +F+PA  +TT S+  +    S S RP   +  +T    +  +  +  P  KEAP GFTPP+L+ NT SPIF GSTGG+LRKAQV+EFYVITW      N+ K  + E P    A      N++KLAR+++
Sbjct:    2 ATQAAGIFSPA-ITTTTSAVKKLHLFSSSHRPKSLSFTKTAIRAEKTESSSAAPAVKEAPVGFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITW------NSPKEQIFEMPTGGAAIMREGPNLLKLARKEQ 130          
BLAST of EY686944 vs. ExPASy Swiss-Prot
Match: PSAD_SOLLC (Photosystem I reaction center subunit II, chloroplastic OS=Solanum lycopersicum GN=psaD PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 3.112e-17
Identity = 54/102 (52.94%), Postives = 63/102 (61.76%), Query Frame = 3
Query:  105 MGATDXASLFAPANFSTTESSAPRKQSS-SFSI-RPLKHNAPRTNTIKDMAD-GKTETPTKEAPGGFTPPELERNTRSPIFRGSTGGMLRKAQVQEFYVITW 401
            M     ASLF P       ++AP KQS  SFS  + LK     T  I+ MA+     T  K AP GFTPP+L+ NT SPIF GSTGG+LRKAQV+EFYVITW
Sbjct:    1 MAMATQASLFTPPLSVPKSTTAPWKQSLVSFSTPKQLKSTVSVTRPIRAMAEEAPAATEEKPAPAGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITW 102          
BLAST of EY686944 vs. ExPASy Swiss-Prot
Match: PSAD_SPIOL (Photosystem I reaction center subunit II, chloroplastic OS=Spinacia oleracea GN=psaD PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 1.544e-16
Identity = 52/109 (47.71%), Postives = 69/109 (63.30%), Query Frame = 3
Query:  105 MGATDXASLFAPANFSTTESSAPRKQSS-------SFSIRPL-KHNAPRTNTIKDMADGKTE--TPTKEAPGGFTPPELERNTRSPIFRGSTGGMLRKAQVQEFYVITW 401
            M     A+LF+P++ S+ +    R  +S       +F+ +P  +H++ R       A+GK    T TKEAP GFTPPEL+ NT SPIF GSTGG+LRKAQV+EFYVITW
Sbjct:    1 MAMATQATLFSPSSLSSAKPIDTRLTTSFKQPSAVTFASKPASRHHSIRAAAA---AEGKAAAATETKEAPKGFTPPELDPNTPSPIFAGSTGGLLRKAQVEEFYVITW 106          
BLAST of EY686944 vs. ExPASy Swiss-Prot
Match: PSAD_CUCSA (Photosystem I reaction center subunit II, chloroplastic OS=Cucumis sativus GN=psaD PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.001e-15
Identity = 52/105 (49.52%), Postives = 66/105 (62.86%), Query Frame = 3
Query:  105 MGATDXASLFAPANFSTTES---SAPRKQSSSFSI---RPLKHNAPRTNTIKDMADGKTETPTKEAPGGFTPPELERNTRSPIFRGSTGGMLRKAQVQEFYVITW 401
            M     A+LF P+  ST +S   S P KQSS+ S    +P    A  + + K  A+ +T     EAP GF+PPEL+ +T SPIF GSTGG+LRKAQV+EFYVITW
Sbjct:    1 MAMATQATLFTPS-LSTPKSTGISIPWKQSSTLSFLTSKPHLKAASSSRSFKVSAEAETSV---EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITW 101          
BLAST of EY686944 vs. ExPASy Swiss-Prot
Match: PSAD1_ARATH (Photosystem I reaction center subunit II-1, chloroplastic OS=Arabidopsis thaliana GN=psaD1 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 3.804e-15
Identity = 56/139 (40.29%), Postives = 74/139 (53.24%), Query Frame = 3
Query:  111 ATDXASLFAPANFSTTESSAPRKQSSSFSIRPLKHNAPRTNTIKDMADGKTETP----TKEAPGGFTPPELERNTRSPIFRGSTGGMLRKAQVQEFYVITWGDS*GANN*K*PMREQP*SYKA-----RNVMKLARQKR 500
            AT  A +F  A  +   S   +    S + RP   +  +T    +  D          TKEAP GFTPP+L+ NT SPIF GSTGG+LRKAQV+EFYVITW      N+ K  + E P    A      N++KLAR+++
Sbjct:    2 ATQAAGIFNSAITTAATSGVKKLHFFSTTHRPKSLSFTKTAIRAEKTDSSAAAAAAPATKEAPVGFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITW------NSPKEQIFEMPTGGAAIMREGPNLLKLARKEQ 134          
BLAST of EY686944 vs. ExPASy Swiss-Prot
Match: PSAD_HORVU (Photosystem I reaction center subunit II, chloroplastic OS=Hordeum vulgare GN=psaD PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.145e-11
Identity = 31/44 (70.45%), Postives = 37/44 (84.09%), Query Frame = 3
Query:  270 PTKEAPGGFTPPELERNTRSPIFRGSTGGMLRKAQVQEFYVITW 401
            P + AP GF PP+L+ +T SPIF GSTGG+LRKAQV+EFYVITW
Sbjct:   56 PAEPAPAGFVPPQLDPSTPSPIFGGSTGGLLRKAQVEEFYVITW 99          
The following BLAST results are available for this feature:
BLAST of EY686944 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
PSAD_NICSY1.492e-1957.00Photosystem I reaction center subunit II, chloropl... [more]
PSAD2_ARATH1.397e-1743.38Photosystem I reaction center subunit II-2, chloro... [more]
PSAD_SOLLC3.112e-1752.94Photosystem I reaction center subunit II, chloropl... [more]
PSAD_SPIOL1.544e-1647.71Photosystem I reaction center subunit II, chloropl... [more]
PSAD_CUCSA1.001e-1549.52Photosystem I reaction center subunit II, chloropl... [more]
PSAD1_ARATH3.804e-1540.29Photosystem I reaction center subunit II-1, chloro... [more]
PSAD_HORVU1.145e-1170.45Photosystem I reaction center subunit II, chloropl... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C2-003-031-B01-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY686944 ID=EY686944; Name=EY686944; organism=Citrus sinensis; type=EST; length=1076bp
GGGNTTTTNTACCGGCGCGCCCCCACCCAGGCGAAGCGCCCCAAANNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCCCGACCCACGCNTCCGAAT
GGACATGGGCGCAACAGATCNAGCCTCTCTCTTCGCACCGGCCAACTTCT
CCACCACCGAATCCTCTGCGCCCAGGAAGCAATCATCATCATTTTCAATA
AGGCCACTAAAACATAATGCCCCACGTACCAACACCATCAAGGACATGGC
TGACGGAAAAACAGAGACACCCACAAAAGAGGCTCCGGGGGGCTTCACCC
CACCAGAACTGGAACGCAACACCCGATCTCCGATCTTCAGAGGCAGCACC
GGCGGGATGCTGCGGAAAGCTCAAGTGCAAGAGTTTTATGTGATCACATG
GGGAGACTCCTAAGGAGCAAATAATTGAAAATGACCAATGAGGGAGCAAC
CATAATCATACAAAGCCCGAAACGTGATGAAGCTGGCAAGGCAAAAAAGA
GAGGAAGGGTACGAGGGCAAGAAAGTGAAGAAAAGGCCGGAGCAGAAAAC
ACAGGGACCAAAGGCCAACGCCCAGAAAAAAAGCAAAGGAAAAGGGAAGA
GAAGGAGACGCGAGGAGAGAGGGAGACCACGAAGAAAGGGAGGAGCACGG
AGAAAGAAAAAAAGGGCGAGTCCGGCGCGCGCGCGGGGAGAGGAGGAAGA
AAAAAAGAAAAGAGGGAGGGAGGGAGGAAGAGGGAGAGGTGCGGGAGAGC
TAACGACCGGAGACAGTGCCGGCCCANGCGAGCGGGTGAGGAGGAAGGCG
GCGCACAAGGACGCACCAGGAGAAGAGGGCGTCATACTCACCACACACCA
CAACTTAACCACAACCGGCCCGGCCCCGAGCACCAAACACCACACACGGT
CACAGAAGAGGAGACCAATAAAAGCCCGGCACAGAAAAACACACAGAGCA
AGACACACGGAAAAAAAGAGGAGCAAGAGGGAAACAACCACTATAGTGCT
CGGTGGCGAGGCCAGCACGGGAAGGAGGCAATAAGAGGAACAAACAGACC
GGAGACAAGAGGGACGGAGAGGCACA
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