EY686930

Overview
NameEY686930
Unique NameEY686930
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length869
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY686930 vs. ExPASy Swiss-Prot
Match: AMY3_HORVU (Alpha-amylase type B isozyme (Fragment) OS=Hordeum vulgare GN=AMY1.3 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.257e-25
Identity = 67/160 (41.88%), Postives = 94/160 (58.75%), Query Frame = 1
Query:  172 LGAVIRNGREILFQGFNWESCKHD--WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSS-YGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIP----LSWDEHAV----TSCTGGLGNGSTGDNFHGGSNIDH 618
            L A + +G ++LFQGFNWES KH+  W+  L  KV DI+ +G T VWLPPA+ S A +GY+P  LY L++S YG++  LK+L+  +    V+A+ADIVINHR    +   G Y  ++G+     L W  H +         G GN  TG +F    +IDH
Sbjct:   17 LSASLASG-QVLFQGFNWESWKHNGGWYNFLMGKVDDIAAAGITHVWLPPASQSVAEQGYMPGRLYDLDASKYGNKAQLKSLIGALHGKGVKAIADIVINHRTAEHKDGRGIYCIFEGVTPDARLDWGPHMICRDDRPYADGTGNPDTGADFGAAPDIDH 175          
BLAST of EY686930 vs. ExPASy Swiss-Prot
Match: AMY2_HORVU (Alpha-amylase type B isozyme OS=Hordeum vulgare GN=AMY1.2 PE=1 SV=3)

HSP 1 Score: 114.39 bits (285), Expect = 8.577e-25
Identity = 67/160 (41.88%), Postives = 93/160 (58.13%), Query Frame = 1
Query:  172 LGAVIRNGREILFQGFNWESCKHD--WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSS-YGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDG----IPLSWDEHAV----TSCTGGLGNGSTGDNFHGGSNIDH 618
            L A + +G ++LFQGFNWES KH+  W+  L  KV DI+ +G T VWLPPA+ S A +GY+P  LY L++S YG++  LK+L+  +    V+A+ADIVINHR    +   G Y  ++G      L W  H +         G GN  TG +F    +IDH
Sbjct:   17 LSASLASG-QVLFQGFNWESWKHNGGWYNFLMGKVDDIAAAGITHVWLPPASQSVAEQGYMPGRLYDLDASKYGNKAQLKSLIGALHGKGVKAIADIVINHRTAEHKDGRGIYCIFEGGTPDARLDWGPHMICRDDRPYADGTGNPDTGADFGAAPDIDH 175          
BLAST of EY686930 vs. ExPASy Swiss-Prot
Match: AMY3_WHEAT (Alpha-amylase AMY3 OS=Triticum aestivum GN=AMY1.1 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.463e-24
Identity = 62/150 (41.33%), Postives = 85/150 (56.67%), Query Frame = 1
Query:  199 EILFQGFNWESCKHD--WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDG----IPLSWDEHAV----TSCTGGLGNGSTGDNFHGGSNIDH 618
            +ILFQGFNWES K    W++ ++ KV +I+ +G T VWLPP + S +PEGYLP  LY+LNS YGS   LK+L+   +   +  +ADIVINHR    +   G Y  ++G      L W    +    T  + G G+  TG  F    +IDH
Sbjct:   26 QILFQGFNWESWKTQGGWYKFMQGKVEEIASTGATHVWLPPPSQSVSPEGYLPGQLYNLNSKYGSGADLKSLIQAFRGKNISCVADIVINHRCADKKDGRGVYCIFEGGTSDNRLDWGPDEICSDDTKYSNGRGHRDTGGGFDAAPDIDH 175          
BLAST of EY686930 vs. ExPASy Swiss-Prot
Match: AMYA_VIGMU (Alpha-amylase OS=Vigna mungo GN=AMY1.1 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.911e-24
Identity = 60/149 (40.27%), Postives = 90/149 (60.40%), Query Frame = 1
Query:  202 ILFQGFNWESCKHD-WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSS-YGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYD-GIPLS---WDEHAV----TSCTGGLGNGSTGDNFHGGSNIDH 618
            +LFQGFNWES K   W+ +L+  +PD++ +G T VWLPP + S +PEGYLP  LY L++S YGS++ LK+L+    +  ++ +ADIVINHR    +   G Y  ++ G P S   W    +    T+ + G GN  +G+ +    +IDH
Sbjct:   25 LLFQGFNWESSKKGGWYNSLKNSIPDLANAGITHVWLPPPSQSVSPEGYLPGRLYDLDASKYGSKNELKSLIAAFHEKGIKCLADIVINHRTAERKDGRGIYCIFEGGTPDSRQDWGPSFICRDDTAYSDGTGNNDSGEGYDAAPDIDH 173          
BLAST of EY686930 vs. ExPASy Swiss-Prot
Match: AMY1_HORVU (Alpha-amylase type A isozyme OS=Hordeum vulgare GN=AMY1.1 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.239e-23
Identity = 63/158 (39.87%), Postives = 90/158 (56.96%), Query Frame = 1
Query:  178 AVIRNGREILFQGFNWESCKHD--WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSS-YGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIP----LSWDEHAV----TSCTGGLGNGSTGDNFHGGSNIDH 618
            A + +G ++LFQGFNWES K    W+  +  KV DI+ +G T VWLPP +HS + EGY+P  LY +++S YG+   LK+L+  +    V+A+ADIVINHR    +   G Y  ++G      L W  H +    T  + G  N  TG +F    +IDH
Sbjct:   19 AGLASGHQVLFQGFNWESWKQSGGWYNMMMGKVDDIAAAGVTHVWLPPPSHSVSNEGYMPGRLYDIDASKYGNAAELKSLIGALHGKGVQAIADIVINHRCADYKDSRGIYCIFEGGTSDGRLDWGPHMICRDDTKYSDGTANLDTGADFAAAPDIDH 176          
BLAST of EY686930 vs. ExPASy Swiss-Prot
Match: AMY3D_ORYSJ (Alpha-amylase isozyme 3D OS=Oryza sativa subsp. japonica GN=AMY1.3 PE=2 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.618e-23
Identity = 61/151 (40.40%), Postives = 87/151 (57.62%), Query Frame = 1
Query:  199 EILFQGFNWESCKHD--WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSS-YGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDG----IPLSWDEHAV----TSCTGGLGNGSTGDNFHGGSNIDH 618
            ++LFQGFNWES K    W+  L+ +V DI+K+G T VWLPP +HS AP+GY+P  LY L++S YG+   LK+L+       V+ +AD+VINHR    +   G Y  ++G      L W    +    T  + G G+  TG+ F    +IDH
Sbjct:   26 QVLFQGFNWESWKQQGGWYNMLKGQVDDIAKAGVTHVWLPPPSHSVAPQGYMPGRLYDLDASKYGTAAELKSLIAAFHGKGVQCVADVVINHRCAEKKDARGVYCVFEGGTPDDRLDWGPGMICSDDTQYSDGTGHRDTGEGFGAAPDIDH 176          
BLAST of EY686930 vs. ExPASy Swiss-Prot
Match: AMY2A_ORYSJ (Alpha-amylase isozyme 2A OS=Oryza sativa subsp. japonica GN=AMY2A PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.113e-23
Identity = 62/156 (39.74%), Postives = 89/156 (57.05%), Query Frame = 1
Query:  184 IRNGREILFQGFNWESCKHD--WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSS-YGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIP----LSWDEHAV----TSCTGGLGNGSTGDNFHGGSNIDH 618
            + +G +ILFQGFNWES +    W+  L  KV DI  +G T VWLPP +HS + +GY+P  LY L++S YG+   LK+L+  +    ++A+AD+VINHR    +   G Y  ++G      L W  H +    T  + G GN  TG +F    +IDH
Sbjct:   18 LASGDKILFQGFNWESWRQSGGWYNLLMGKVDDIVAAGVTHVWLPPPSHSVSTQGYMPGRLYDLDASRYGTSMELKSLISALHGKGIQAIADVVINHRCADYKDSRGIYCIFEGGTPDGRLDWGPHMICRDDTQFSDGTGNLDTGADFAAAPDIDH 173          
BLAST of EY686930 vs. ExPASy Swiss-Prot
Match: AMY2A_ORYSI (Alpha-amylase isozyme 2A OS=Oryza sativa subsp. indica GN=AMYC2 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.113e-23
Identity = 62/156 (39.74%), Postives = 89/156 (57.05%), Query Frame = 1
Query:  184 IRNGREILFQGFNWESCKHD--WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSS-YGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIP----LSWDEHAV----TSCTGGLGNGSTGDNFHGGSNIDH 618
            + +G +ILFQGFNWES +    W+  L  KV DI  +G T VWLPP +HS + +GY+P  LY L++S YG+   LK+L+  +    ++A+AD+VINHR    +   G Y  ++G      L W  H +    T  + G GN  TG +F    +IDH
Sbjct:   18 LASGDKILFQGFNWESWRQSGGWYNLLMGKVDDIVAAGVTHVWLPPPSHSVSTQGYMPGRLYDLDASRYGTSMELKSLISALHGKGIQAIADVVINHRCADYKDSRGIYCIFEGGTPDGRLDWGPHMICRDDTQFSDGTGNLDTGADFAAAPDIDH 173          
BLAST of EY686930 vs. ExPASy Swiss-Prot
Match: AMY1_ORYSJ (Alpha-amylase OS=Oryza sativa subsp. japonica GN=AMY1.1 PE=2 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 2.759e-23
Identity = 62/150 (41.33%), Postives = 84/150 (56.00%), Query Frame = 1
Query:  199 EILFQGFNWESCKHD--WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSS-YGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDG----IPLSWDEHAV---TSCTGGLGNGSTGDNFHGGSNIDH 618
            ++LFQGFNWES K +  W+  L  KV DI+ +G T VWLPP +HS   +GY+P  LY L++S YG+E  LK+L+       V+ +ADIVINHR    +   G Y  ++G      L W  H +        G GN  TG +F    +IDH
Sbjct:   32 QVLFQGFNWESWKENGGWYNFLMGKVDDIAAAGITHVWLPPPSHSVGEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADIVINHRTAEHKDGRGIYCLFEGGTPDSRLDWGPHMICRDDPYGDGTGNPDTGADFAAAPDIDH 181          
BLAST of EY686930 vs. ExPASy Swiss-Prot
Match: AMY3E_ORYSJ (Alpha-amylase isozyme 3E OS=Oryza sativa subsp. japonica GN=AMY1.4 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.604e-23
Identity = 60/151 (39.74%), Postives = 84/151 (55.63%), Query Frame = 1
Query:  199 EILFQGFNWESCKHD--WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSS-YGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIP----LSWDEHAV----TSCTGGLGNGSTGDNFHGGSNIDH 618
            ++LFQGFNWES +    W+  L  KV +I+ +G T VWLPP +HS +P+GY+P  LY L++S YG+E  LK+L+       V  +ADIVINHR    +   G Y  ++G      L W    +    T  + G G+  TG  F    +IDH
Sbjct:   26 QVLFQGFNWESWRKQGGWYNFLHEKVEEIASTGATHVWLPPPSHSVSPQGYMPGRLYDLDASKYGTEAELKSLIEAFHDKNVECLADIVINHRCADYKDSRGVYCVFEGGTPDGRLDWGPDMICSDDTQYSNGRGHRDTGAGFGAAPDIDH 176          
The following BLAST results are available for this feature:
BLAST of EY686930 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
AMY3_HORVU2.257e-2541.88Alpha-amylase type B isozyme (Fragment) OS=Hordeum... [more]
AMY2_HORVU8.577e-2541.88Alpha-amylase type B isozyme OS=Hordeum vulgare GN... [more]
AMY3_WHEAT1.463e-2441.33Alpha-amylase AMY3 OS=Triticum aestivum GN=AMY1.1 ... [more]
AMYA_VIGMU1.911e-2440.27Alpha-amylase OS=Vigna mungo GN=AMY1.1 PE=2 SV=1[more]
AMY1_HORVU1.239e-2339.87Alpha-amylase type A isozyme OS=Hordeum vulgare GN... [more]
AMY3D_ORYSJ1.618e-2340.40Alpha-amylase isozyme 3D OS=Oryza sativa subsp. ja... [more]
AMY2A_ORYSJ2.113e-2339.74Alpha-amylase isozyme 2A OS=Oryza sativa subsp. ja... [more]
AMY2A_ORYSI2.113e-2339.74Alpha-amylase isozyme 2A OS=Oryza sativa subsp. in... [more]
AMY1_ORYSJ2.759e-2341.33Alpha-amylase OS=Oryza sativa subsp. japonica GN=A... [more]
AMY3E_ORYSJ3.604e-2339.74Alpha-amylase isozyme 3E OS=Oryza sativa subsp. ja... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-030-H05-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY686930 ID=EY686930; Name=EY686930; organism=Citrus sinensis; type=EST; length=869bp
CCACGCGTCCGATCGGCTAACGTATTAGCGCTAACCTACGCTGCGATCCC
AACTTACTTTTTTGATTATCTCGGTGCTTTATTTCCTGCGATCCAGCGTC
AGACGGCTACCCCTTGAGTTGATATGGATTACACGAGCAAGGGTTTTGAT
GAAACTAACCAGCAAACTGATCTTGGTGCGGTTATACGCAATGGACGAGA
AATTCTGTTTCAGGGTTTCAATTGGGAGTCTTGCAAACATGATTGGTGGA
GAAATTTAGAAAGGAAAGTTCCCGACATTTCAAAATCTGGGTTCACATCA
GTGTGGTTGCCTCCTGCAACTCATTCCTTTGCACCTGAAGGTTACCTACC
ACAGAACCTTTATTCCCTTAATTCTTCATATGGCTCTGAACACCTGTTAA
AAGCTTTACTTCATAAAATGAAACAGCACAAAGTCAGGGCAATGGCTGAC
ATAGTTATCAATCATCGTGTTGGTACTACCCAAGGGCATGGTGGAAAGTA
TAATCGTTATGATGGGATACCATTATCATGGGATGAACATGCAGTTACAT
CTTGTACCGGTGGTTTGGGGAATGGAAGCACTGGGGACAACTTTCATGGT
GGTTCCAATATTGACCATACCCCACACTTTGGTACCGGAAAGACTTTATA
GCATGGCTGCGGGGGGGTACCCCACACTGGGGGCGTTTCAAGATTTTCGG
TTTGGATTTGGCAAAGGGGACTCCCCAAAAGAGGGGGAAAGAATCCTTGG
AAGGAGCGAGGGCCAGATTTTTCTGGTCGGGGAGTAACGGGAACTCCTGG
CAACTTCAACAGTCATGGCGCTGGCATGACCACCAACAAATCCCCTTAAA
CAAAGGGATATACCCTCTG
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