EY686128

Overview
NameEY686128
Unique NameEY686128
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length573
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY686128_ssr413 microsatellite EY686128_ssr413:413..422. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9796 contig Csv1_Contig9796:476..1048. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of EY686128 vs. ExPASy Swiss-Prot
Match: GLR37_ARATH (Glutamate receptor 3.7 OS=Arabidopsis thaliana GN=GLR3.7 PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 1.706e-15
Identity = 44/99 (44.44%), Postives = 61/99 (61.62%), Query Frame = 1 
Query:    1 KEGCPEERRQHSEPHQLRLISFWGLYLLCGTITFTAFLVFLLRMVCQYVRYKQQQ--MXXXXXXXXXXXXTRYSKAVFNFFDFIDEKEEAIKKMFTQCD 291
            K  C  +   + EP+QL L SF GLYL+C  IT +AFLVF+LRM+ Q+VRY++ +                R  + VF+F +F+DEKEEAIK+MF + D
Sbjct:  802 KTNCAGKSNWNPEPNQLHLKSFKGLYLVCIAITVSAFLVFVLRMIRQFVRYRRMERTSSMPRASWSASPTLRLRELVFDFVEFVDEKEEAIKRMFRRSD 900
The following BLAST results are available for this feature:
BLAST of EY686128 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
GLR37_ARATH1.706e-1544.44Glutamate receptor 3.7 OS=Arabidopsis thaliana GN=... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C2-003-034-H08-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY686128 ID=EY686128; Name=EY686128; organism=Citrus sinensis; type=EST; length=573bp
AAAGAGGGCTGTCCAGAAGAGAGGAGACAGCATTCCGAGCCGCACCAACT
TCGTTTAATCAGCTTCTGGGGTCTATATCTTCTATGTGGTACCATCACTT
TCACTGCTTTTCTAGTGTTTCTCCTGAGGATGGTTTGCCAATATGTCCGT
TACAAACAACAGCAGATGCACCCACACTCACCTTCATCCTCCAGTTCATT
TAGTACCCGCTACTCTAAGGCTGTCTTTAATTTCTTTGACTTCATTGATG
AGAAGGAAGAAGCTATCAAGAAAATGTTTACTCAATGTGATTATCCTCAA
GTTCATGGGAGTTCAGGAAGATAATGTACATGTTTGGAGGAAATTGGAGG
ACCAGCCGTACTATTGTGCAATTTAGAGACTAGTATTGAAAGAGAATCTT
GATAAGTTTCTGTATATATATATCATCTTATATACATATTACTTCCCAGA
ATTCATAAAGCATGCAAAATTGTAAATAGCACTGTTGCTGATGTATATGT
AGGCTTGTAGCATTGCATTAAAATTTTGCTTAAGACTCAAAATTAAAATT
AAGAGCAAAAAAAAAAAAAAAAA
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