EY685439

Overview
NameEY685439
Unique NameEY685439
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length946
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY685439_ssr551 microsatellite EY685439_ssr551:551..562. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of EY685439 vs. ExPASy Swiss-Prot
Match: 12KD_FRAAN (Auxin-repressed 12.5 kDa protein OS=Fragaria ananassa PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 3.046e-18
Identity = 51/108 (47.22%), Postives = 64/108 (59.26%), Query Frame = 2 
Query:   41 MLEKLWDDVVAGPQPDRGLGRLRKITTTPLAVKEGGEAESSSGKFQRSLSMXXXXXXXXXXXXXXXXXXXRKDNVWRSVFHPGINLATRGIGAEVFDGPTHPTSPTVY 364
            +L+KLWDD+VAGPQP+RGLG LRK+   PL +K+ GE+           S                    RKDNVWRSVFHPG NL+++ +G +VFD P  P SPTVY
Sbjct:    3 LLDKLWDDIVAGPQPERGLGMLRKVPQ-PLNLKDEGES-----------SKITMPTTPTTPVTPTTPISARKDNVWRSVFHPGSNLSSKTMGNQVFDSP-QPNSPTVY 97
The following BLAST results are available for this feature:
BLAST of EY685439 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
12KD_FRAAN3.046e-1847.22Auxin-repressed 12.5 kDa protein OS=Fragaria anana... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C2-003-019-C03-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685439 ID=EY685439; Name=EY685439; organism=Citrus sinensis; type=EST; length=946bp
TAAAGATTTAGAAACTAGCAGCTAAATTGTAAATTTAAAGATGCTAGAGA
AGCTTTGGGACGATGTTGTGGCAGGGCCTCAGCCTGATCGTGGCCTTGGC
AGGCTGAGGAAAATCACCACAACACCCTTAGCAGTCAAAGAGGGTGGTGA
GGCGGAGTCGTCGTCGGGCAAGTTCCAGAGGTCTCTGTCAATGCCAGCGA
GTCCAGGGGCACCGTCGACGCCAGTGACGCCGACGACGCCGCTGTCCGCG
CGTAAGGACAACGTGTGGAGGAGCGTGTTTCACCCCGGTATCAACCTTGC
TACTAGGGGTATCGGTGCAGAGGTCTTTGACGGGCCCACACATCCTACCT
CTCCCACTGTTTATGTATTGCAACCACAGATTCGTCTTTTATTTTTGAGT
GTCGGGGGGGCGCTCTGCCCCCTATGCCGGCTGCACGTACCTCTCTCCCT
CCACCCGCAACGACCGCCCCCCACCCACCACACTCCTCACCCCTCGCGTG
CCTCGTACTCACGACACGCCGAATCACGGAACCAAGGAAGAGAGTCTCGA
CGCGCGCGCGCGAGACCCGGACAAGACAGGAACCCGGAAACTTTTTTTCT
TTTTTCGACTATCAAGGACGAGCAGCGGCACCAACTCACAAGCCCACCAA
ACCGACCAGCCCCACTGCTCGTACCCACCCCGGACATGCCACCACGCACA
GAGCAACCGACGCACGAGGCCAGACATAAATCAAGCGAATGGCCTCTATC
CAAAGACAACAAAGTTGTAGAATTGCGAATCTCACTTTCTCACTCACCGC
ACAGGAAAGCAACGGACGAGCTGGAGGGAGCCCGAACATGACGACCCACT
GACCAATACCACAGATCGCAGTGATACCCCCAACAGCATAAGCCGCGCCC
CCCCTAGCTCATCACTAGATAAACTCACCCCGACGCCCTAGCCGCT
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