EY685353

Overview
NameEY685353
Unique NameEY685353
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length922
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY685353 vs. ExPASy Swiss-Prot
Match: RPB7_SOYBN (DNA-directed RNA polymerase II subunit RPB7 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 8.733e-23
Identity = 53/63 (84.13%), Postives = 55/63 (87.30%), Query Frame = 3 
Query:   81 PXDMXGQXGDPFNYTTSDGSVKIQKDSEVRLKIIGTPVDATEIFCIGTVKDDFLGVINDPTTI 269
            P DM  Q GD  NYTTSDGSVKIQKDSEVRLKIIGT VDATEIFCIGT+KDDFLGVINDP T+
Sbjct:  114 PDDMEFQSGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPATV 176
[Close]
BLAST of EY685353 vs. ExPASy Swiss-Prot
Match: RPB7_ARATH (DNA-directed RNA polymerase II subunit RPB7 OS=Arabidopsis thaliana GN=RPB19 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 5.298e-20
Identity = 48/60 (80.00%), Postives = 51/60 (85.00%), Query Frame = 3 
Query:   81 PXDMXGQXGDPFNYTTSDGSVKIQKDSEVRLKIIGTPVDATEIFCIGTVKDDFLGVINDP 260
            P DM  Q GD  NYTTSDGSVKIQK+ EVRLKIIGT VDAT IFC+GT+KDDFLGVINDP
Sbjct:  114 PDDMEFQAGDMPNYTTSDGSVKIQKECEVRLKIIGTRVDATAIFCVGTIKDDFLGVINDP 173
The following BLAST results are available for this feature:
BLAST of EY685353 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RPB7_SOYBN8.733e-2384.13DNA-directed RNA polymerase II subunit RPB7 OS=Gly... [more]
RPB7_ARATH5.298e-2080.00DNA-directed RNA polymerase II subunit RPB7 OS=Ara... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C2-003-018-A12-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685353 ID=EY685353; Name=EY685353; organism=Citrus sinensis; type=EST; length=922bp
TGACCGAACCGGCGGCCGGTCCGGATTCCGGGGTCGACCACGCGTCCGCG
GACGCGTGGGCGGACCCCCCCTTTTAGAATCCGGANGATATGGANGGNCA
GNGAGGAGACCCTTTTAATTACACTACCTCAGATGGATCGGTGAAAATTC
AAAAGGATAGTGAGGTTCGGTTAAAGATAATTGGGACTCCAGTTGATGCC
ACTGAAATTTTCTGCATCGGTACCGTAAAGGATGATTTCTTGGGAGTGAT
CAATGATCCTACAACGATCTAGTGAGGGAATAGCTCCCAGATCAACTTCA
CACATCTCGCTTGCTGTTCCTTGTTGTCTAGTTTTGTAAGCCATTGATCT
GCCTTCGACGTGTCCATTAACGTACTTATTGCTCCCCGCACACGATCCTA
GCTTTGAGGGCTCCTTTATCGAACCCACGGACGAGCAAATGAATGATAGG
GGGGCGTAGCGCAGCAACGGCCGCCCACTGCGCAAGAGACAAAGGACGCC
ACGCATTACACAGCTACTCACCCGCATTTCCACCACCTCGACCGGCACAC
CCGGTCAACCACCCAGAGACTCGCAGACGACAAAAGCGAAACAGACCTCG
CAACCAAATTACAAATAGCGACCCAAACGTTGATGCGATAACGGTCGCAC
AAGACAGAGTAAAAGCAAGAAGCGATACGAAAATATAAGCCCCTCGATCA
GAGACCGAGCAGGTACTATACGACGTTTACAACTGTCCACTTCTTGACTC
TCATATCACACAACAACGATACACTATTTCAACACTCACGAAACACATAA
ATCGCTCCAGCCGATGAGCTCCCTCAAACGGCCTCTCCCTCACGGTTCGC
ACCACAAATCAATCCCCGCACCAACACCTCCACACCCCGCGACACGCCGA
GCCCGCACTCACCCCCCACCCT
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