EY685352

Overview
NameEY685352
Unique NameEY685352
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length868
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY685352_ssr639 microsatellite EY685352_ssr639:639..650. BLAST: Citrus ESTs to SwissProt
Homology
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BLAST of EY685352 vs. ExPASy Swiss-Prot
Match: EXBB_PSEPU (Biopolymer transport protein exbB OS=Pseudomonas putida GN=exbB PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.612e-15
Identity = 43/56 (76.79%), Postives = 50/56 (89.29%), Query Frame = -2 
Query:   61 LVGIRAVVVFNVFARSIAGYKAQVSDASAEVLLLVSRDLDHLPTERSSQPHMVKVG 228
            +  I AVV++NVFARSIAGYKAQVSDASA+VLLLVSRDLDH  +ER++ PHMVKVG
Sbjct:  275 VAAIPAVVIYNVFARSIAGYKAQVSDASAQVLLLVSRDLDHQGSERAA-PHMVKVG 329
The following BLAST results are available for this feature:
BLAST of EY685352 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
EXBB_PSEPU3.612e-1576.79Biopolymer transport protein exbB OS=Pseudomonas p... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C2-003-018-A11-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685352 ID=EY685352; Name=EY685352; organism=Citrus sinensis; type=EST; length=868bp
TTCGTGGTTCTCGACGAGCTCGTCGTCGCCTTGATTCAAATGCAGGCCCA
TGGCCGATTACCCCACTTTCACCATATGCGGTTGCGAGCTGCGCTCGGTA
GGCAGGTGATCGAGGTCACGGCTGACCAGCAACAGGACTTCTGCCGAAGC
GTCCGACACCTGGGCCTTGTAGCCGGCGATCGAACGGGCGAAAACGTTGA
AGACGACTACCGCACGAATCCCGACCAACCAAACACAAGGAGGATGGGAC
AGGGCAAGGTGGAGGAGGGGGGGAGGGGGCGGGGGGGGGGATCCAAACCA
CGACACTCCACCCCCATCACACTCGACGCGAACAGAGACAGACAATAAGA
AAGAGATAGAGTGGACGGAGGGGTAAGTGAATAAAAAGGAAAACAGCGCC
CCCCCCCACCCCCGGACACTCGCAGTCAACCATCAGTCCACACTCCACGC
CTACAGCCACTTCTCCAGGGGAGGTGAGGGGGAGGGTGGGAGAGGGGAGG
GGGGGTGGAAGTCCCCACAAAACTCCCTACAATACACCATCCTGACCCTC
AACTCCCACAACTCTATGTGCCATCGCAACAAGTCCGAATGTCATCACAA
ACAAAACATCAAACTACCCAGCCACATATAAAGACATCACAACAACAACA
CACCACACACCACCAACACCCCCATACAAAAACGCCCAGACACGTTCCGG
CGCGACGGAAACTACCATAACAACGCCCCGATGACTGCTGCGTACCATAA
GATATTCTAATCAAATCTCATAGTGAATCATCACATCAATGATCAAACTA
CGCGGGAAAAAGGCATATGAGAGATCACACAACGCACGGGAGACGTAATG
CGTCTGCAAAACCAGAAC
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