EY685345

Overview
NameEY685345
Unique NameEY685345
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length856
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY685345 vs. ExPASy Swiss-Prot
Match: RL10_VITRI (60S ribosomal protein L10 OS=Vitis riparia GN=RPL10 PE=2 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 1.152e-58
Identity = 105/119 (88.24%), Postives = 113/119 (94.96%), Query Frame = 3
Query:    3 MLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLEATT 359
            MLSCAGADRLQTGMRGAFGKPQGTCARV+IGQVLLSVRCKD NSHHAQEALRRAKFKFP RQKIIVSRKWGFTKF+R DY++WKS+NRI+PDGVNAKLLGCHGPLA RQPG+AF+ A T
Sbjct:  102 MLSCAGADRLQTGMRGAFGKPQGTCARVSIGQVLLSVRCKDGNSHHAQEALRRAKFKFPARQKIIVSRKWGFTKFNRTDYIKWKSQNRILPDGVNAKLLGCHGPLANRQPGKAFINACT 220          
BLAST of EY685345 vs. ExPASy Swiss-Prot
Match: RL10_SOLME (60S ribosomal protein L10 OS=Solanum melongena GN=RPL10 PE=2 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 6.319e-57
Identity = 107/118 (90.68%), Postives = 112/118 (94.92%), Query Frame = 3
Query:    3 MLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLEAT 356
            MLSCAGADRLQTGMRGAFGKPQG CARVAIGQVLLSVRCKD NS+HAQEALRRAKFKFPGRQKIIVSRKWGFTKFSR DYL++KSENRIVPDGVNAKLLG HGPLA RQPGRAFL ++
Sbjct:  102 MLSCAGADRLQTGMRGAFGKPQGVCARVAIGQVLLSVRCKDGNSNHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRTDYLKYKSENRIVPDGVNAKLLGNHGPLAARQPGRAFLSSS 219          
BLAST of EY685345 vs. ExPASy Swiss-Prot
Match: RL10_TOBAC (60S ribosomal protein L10 (Fragment) OS=Nicotiana tabacum GN=RPL10 PE=2 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 8.252e-57
Identity = 107/117 (91.45%), Postives = 111/117 (94.87%), Query Frame = 3
Query:    3 MLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLEA 353
            MLSCAGADRLQTGMRGAFGKPQG CARVAIGQVLLSVRCKD N++HAQEALRRAKFKFP RQKIIVSRKWGFTKFSR DYL++KSENRIVPDGVNAKLLGCHG LA RQPGRAFLEA
Sbjct:   31 MLSCAGADRLQTGMRGAFGKPQGVCARVAIGQVLLSVRCKDGNANHAQEALRRAKFKFPRRQKIIVSRKWGFTKFSRTDYLKYKSENRIVPDGVNAKLLGCHGRLAARQPGRAFLEA 147          
BLAST of EY685345 vs. ExPASy Swiss-Prot
Match: RL10_EUPES (60S ribosomal protein L10 OS=Euphorbia esula GN=RPL10 PE=2 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 2.033e-55
Identity = 104/117 (88.89%), Postives = 111/117 (94.87%), Query Frame = 3
Query:    3 MLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLEA 353
            MLSCAGADRLQTGMRGAFGKPQG CARVAIGQVLLSVRCKD+NSH+AQEALRRAKFKFPGRQKIIVSRKWGFTK +RADY R KSENRI+PDGVNAKLLGCHG LA R+PGRAF++A
Sbjct:  102 MLSCAGADRLQTGMRGAFGKPQGVCARVAIGQVLLSVRCKDNNSHNAQEALRRAKFKFPGRQKIIVSRKWGFTKINRADYPRLKSENRILPDGVNAKLLGCHGRLANRKPGRAFIDA 218          
BLAST of EY685345 vs. ExPASy Swiss-Prot
Match: RL10_PINTA (60S ribosomal protein L10 OS=Pinus taeda GN=RPL10 PE=2 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 6.539e-54
Identity = 98/116 (84.48%), Postives = 112/116 (96.55%), Query Frame = 3
Query:    3 MLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLE 350
            MLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVR +D++S+HAQEALRRAKFKFPGR+KIIV+RKWGFTK++RADYL+WK+ENRIVPDGVN KLLGC GPL+ R+PG+AFL+
Sbjct:  102 MLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRSRDNHSNHAQEALRRAKFKFPGREKIIVNRKWGFTKYTRADYLKWKTENRIVPDGVNPKLLGCRGPLSNRKPGQAFLK 217          
BLAST of EY685345 vs. ExPASy Swiss-Prot
Match: RL102_ARATH (60S ribosomal protein L10-2 OS=Arabidopsis thaliana GN=RPL10B PE=2 SV=2)

HSP 1 Score: 208.379 bits (529), Expect = 4.238e-53
Identity = 100/117 (85.47%), Postives = 105/117 (89.74%), Query Frame = 3
Query:    3 MLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLEA 353
            MLSCAGADRLQTGMRGAFGK  GTCARVAIGQVLLSVRCKD++ HHAQEALRRAKFKFPGRQKIIVSRKWGFTKF+RADY + + E RIVPDGVNAK L CHGPLA RQPG AFL A
Sbjct:  102 MLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLSVRCKDAHGHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRADYTKLRQEKRIVPDGVNAKFLSCHGPLANRQPGSAFLSA 218          
BLAST of EY685345 vs. ExPASy Swiss-Prot
Match: RL101_ARATH (60S ribosomal protein L10-1 OS=Arabidopsis thaliana GN=RPL10A PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 2.103e-52
Identity = 98/117 (83.76%), Postives = 105/117 (89.74%), Query Frame = 3
Query:    3 MLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLEA 353
            MLSCAGADRLQTGMRGAFGK  GTCARVAIGQVLLSVRCKD++ HHAQEALRRAKFKFPGRQKIIVSRKWGFTKF+RAD+ + + E R+VPDGVNAK L CHGPLA RQPG AFL A
Sbjct:  102 MLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLSVRCKDAHGHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRADFTKLRQEKRVVPDGVNAKFLSCHGPLANRQPGSAFLPA 218          
BLAST of EY685345 vs. ExPASy Swiss-Prot
Match: RL10_MAIZE (60S ribosomal protein L10 OS=Zea mays GN=RPL10 PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 2.326e-51
Identity = 99/117 (84.62%), Postives = 106/117 (90.60%), Query Frame = 3
Query:    3 MLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLEA 353
            MLSCAGADRLQTGMRGAFGKPQGTCARV IGQVLLSVRCKD+N+ HA EALRRAKFKFP RQKII SRKWGFTKFSRADYL++KSE RIVPDGVNAKLL  HG L +R PG+AFL+A
Sbjct:  102 MLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKDNNAAHASEALRRAKFKFPARQKIIESRKWGFTKFSRADYLKYKSEGRIVPDGVNAKLLANHGRLEKRAPGKAFLDA 218          
BLAST of EY685345 vs. ExPASy Swiss-Prot
Match: RL102_ORYSJ (60S ribosomal protein L10-2 OS=Oryza sativa subsp. japonica GN=SG12 PE=2 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 5.181e-51
Identity = 98/117 (83.76%), Postives = 105/117 (89.74%), Query Frame = 3
Query:    3 MLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLEA 353
            MLSCAGADRLQTGMRGAFGKPQGTCARV IGQVLLSVRCK +N+ HA EALRRAKFKFPGRQKII SRKWGFTKFSR +Y+R KSE RI+PDGVNAKLLGCHG L+ R PG+AFL A
Sbjct:  102 MLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKPNNAVHASEALRRAKFKFPGRQKIIESRKWGFTKFSRDEYVRLKSEGRIMPDGVNAKLLGCHGRLSARAPGKAFLSA 218          
BLAST of EY685345 vs. ExPASy Swiss-Prot
Match: RL102_ORYSI (60S ribosomal protein L10-2 OS=Oryza sativa subsp. indica GN=SG12 PE=2 SV=2)

HSP 1 Score: 201.445 bits (511), Expect = 5.181e-51
Identity = 98/117 (83.76%), Postives = 105/117 (89.74%), Query Frame = 3
Query:    3 MLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLEA 353
            MLSCAGADRLQTGMRGAFGKPQGTCARV IGQVLLSVRCK +N+ HA EALRRAKFKFPGRQKII SRKWGFTKFSR +Y+R KSE RI+PDGVNAKLLGCHG L+ R PG+AFL A
Sbjct:  102 MLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKPNNAVHASEALRRAKFKFPGRQKIIESRKWGFTKFSRDEYVRLKSEGRIMPDGVNAKLLGCHGRLSARAPGKAFLSA 218          
The following BLAST results are available for this feature:
BLAST of EY685345 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
RL10_VITRI1.152e-5888.2460S ribosomal protein L10 OS=Vitis riparia GN=RPL1... [more]
RL10_SOLME6.319e-5790.6860S ribosomal protein L10 OS=Solanum melongena GN=... [more]
RL10_TOBAC8.252e-5791.4560S ribosomal protein L10 (Fragment) OS=Nicotiana ... [more]
RL10_EUPES2.033e-5588.8960S ribosomal protein L10 OS=Euphorbia esula GN=RP... [more]
RL10_PINTA6.539e-5484.4860S ribosomal protein L10 OS=Pinus taeda GN=RPL10 ... [more]
RL102_ARATH4.238e-5385.4760S ribosomal protein L10-2 OS=Arabidopsis thalian... [more]
RL101_ARATH2.103e-5283.7660S ribosomal protein L10-1 OS=Arabidopsis thalian... [more]
RL10_MAIZE2.326e-5184.6260S ribosomal protein L10 OS=Zea mays GN=RPL10 PE=... [more]
RL102_ORYSJ5.181e-5183.7660S ribosomal protein L10-2 OS=Oryza sativa subsp.... [more]
RL102_ORYSI5.181e-5183.7660S ribosomal protein L10-2 OS=Oryza sativa subsp.... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-013-H10-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685345 ID=EY685345; Name=EY685345; organism=Citrus sinensis; type=EST; length=856bp
AGATGCTTTCGTGTGCTGGGGCTGATCGGCTCCAGACTGGAATGAGGGGT
GCTTTTGGAAAGCCCCAAGGAACCTGTGCTCGTGTTGCTATCGGGCAGGT
CTTGCTTTCTGTCCGTTGCAAGGACAGTAACAGCCACCATGCTCAGGAGG
CCCTTCGCCGTGCTAAGTTCAAGTTTCCTGGTCGTCAAAAGATTATTGTC
AGCAGGAAATGGGGATTTACCAAGTTCAGCCGTGCTGATTATCTGAGGTG
GAAGTCGGAGAACAGGATTGTCCCAGATGGTGTGAATGCCAAGCTTCTCG
GATGTCATGGTCCTTTGGCTCAACGCCAACCTGGAAGAGCTTTCCTGGAA
GCAACAACCTAAGATATTTACTGTCTCAAAATAGCAGAGCTGTGACTACT
GTCTAGTTTATTATTTTCCATTTCGTACCTTTTCTCAGTTGAACTGGATT
TCTCAAGTTGAAGTGACATGTTTATTTGGTTTAACTATGTGATCCTTGCA
GTTGTCTTAGTGAATTTGCAATTTGCACTCTTCTATATGATTTGTATGGC
TTATTTTTTATTCCACCTTTTCTCCCTCATTGCTGATTGGGCAACATGGC
AAATTTGGGTTGGTGATATAATCTTAATCAGCCAAAATCCTTCGTGGTTA
AGCTGATCTGGAAAAATCTGAGGAAATAATTAGGCGAAAAAAATCGTGGG
CTTCAATAAAACACAAAACACACCTAACCGAGACACATACCTCAAAAACA
GACAAAAACGCCCGCGCCCCCTCAACAAGGACCTACCCTTCCCTACTCCT
GCCATGCGCACCACAACCTATCTACAATTGGCACACTAAAATTACTTCTA
GAGCAT
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