EY685342

Overview
NameEY685342
Unique NameEY685342
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length635
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY685342 vs. ExPASy Swiss-Prot
Match: XPB1_ARATH (DNA repair helicase XPB1 OS=Arabidopsis thaliana GN=XPB1 PE=2 SV=3)

HSP 1 Score: 129.413 bits (324), Expect = 1.499e-29
Identity = 64/102 (62.75%), Postives = 79/102 (77.45%), Query Frame = 3 
Query:   12 TSLPPPDSGADLSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVYMEYSTXXXXXXXXXXXXPKDPSKRHYLFKRRF 317
            TSLPPPD+G+ LSYH  +EQL+LLGKV++AGDD VGLEQL+ED D +AL KARR  GSMS MSG++GMVYMEY++            PKDP+KRH LFK+R+
Sbjct:  666 TSLPPPDAGSSLSYHSQEEQLSLLGKVMNAGDDLVGLEQLEEDTDGMALQKARRSMGSMSVMSGSKGMVYMEYNS-GRHKSGQQFKKPKDPTKRHNLFKKRY 766
[Close]
BLAST of EY685342 vs. ExPASy Swiss-Prot
Match: XPB2_ARATH (DNA repair helicase XPB2 OS=Arabidopsis thaliana GN=XPB2 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 9.097e-27
Identity = 63/102 (61.76%), Postives = 75/102 (73.53%), Query Frame = 3 
Query:   12 TSLPPPDSGADLSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVYMEYSTXXXXXXXXXXXXPKDPSKRHYLFKRRF 317
            TSLPPPD+G+ L YH  +EQL+LLGKVL+AGDD VGLEQL+ED D  AL K RR  GSMSAMSGA G VYMEY++            PKDP+KRH +FK+R+
Sbjct:  666 TSLPPPDAGSSLGYHSQEEQLSLLGKVLNAGDDMVGLEQLEEDTDGKAL-KTRRSMGSMSAMSGANGRVYMEYNS-GRQKSGNQSKKPKDPTKRHNIFKKRY 765
The following BLAST results are available for this feature:
BLAST of EY685342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
XPB1_ARATH1.499e-2962.75DNA repair helicase XPB1 OS=Arabidopsis thaliana G... [more]
XPB2_ARATH9.097e-2761.76DNA repair helicase XPB2 OS=Arabidopsis thaliana G... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C2-003-013-H06-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685342 ID=EY685342; Name=EY685342; organism=Citrus sinensis; type=EST; length=635bp
CCACGCGTCCGACAAGTTTGCCTCCCCCTGATTCGGGTGCTGATTTGAGC
TACCACCGTCTGGATGAGCAACTGGCACTTCTTGGCAAGGTTTTGAGTGC
CGGTGATGATGCTGTGGGTCTAGAGCAATTAGATGAAGATGCTGATGACA
TTGCCCTCCATAAAGCCCGTCGCATTGCAGGATCCATGAGTGCGATGTCA
GGTGCACAGGGGATGGTTTACATGGAATACAGCACTGGGCAGAAGAAACT
TGGTCTGGGCCAGAAGGGCAAGCCTAAGGATCCATCCAAGCGGCATTATT
TGTTTAAAAGACGCTTCGGGTGAGATAATGTTGGAGCCAGCCTTGCAGAT
TGATGGCTCGTTGAGCCTTTAACACAATGCTACAAGAAGGTAGCATTTTG
CATCTGCTCAGTTGCAGCAGGTTTATACCAACAATGGATATAGATTGTGA
GACTATAAAATCTTTGTAATTTTATCACGAGATCTGAGATGGGACCAAAA
CTATAAACTTGAGGTTGTATCATGTACATTAATCGGAAATGACAATGTTG
TTTCAATTTTAGCTGGCNAAAAANAAAAAAAAAAAAAAAAANAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANA
back to top