EY685334

Overview
NameEY685334
Unique NameEY685334
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length493
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12086 contig Csv1_Contig12086:264..756. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY685334 vs. ExPASy Swiss-Prot
Match: R23A2_ARATH (60S ribosomal protein L23a-2 OS=Arabidopsis thaliana GN=RPL23AB PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 8.623e-30
Identity = 67/86 (77.91%), Postives = 67/86 (77.91%), Query Frame = 1
Query:    1 LDHYQILKYPLTTESAMKKIEDNNTLVFXXXXXXXXXXXXXXXXXMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVANKIGII 258
            LDHYQILKYPLTTESAMKKIEDNNTLVF                 MYDIQ KKVNTLIRPDGTKKAYVRLTPD DALDVANKIGII
Sbjct:   69 LDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154          
BLAST of EY685334 vs. ExPASy Swiss-Prot
Match: R23A1_ARATH (60S ribosomal protein L23a-1 OS=Arabidopsis thaliana GN=RPL23AA PE=2 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 8.623e-30
Identity = 67/86 (77.91%), Postives = 67/86 (77.91%), Query Frame = 1
Query:    1 LDHYQILKYPLTTESAMKKIEDNNTLVFXXXXXXXXXXXXXXXXXMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVANKIGII 258
            LDHYQILKYPLTTESAMKKIEDNNTLVF                 MYDIQ KKVNTLIRPDGTKKAYVRLTPD DALDVANKIGII
Sbjct:   69 LDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154          
BLAST of EY685334 vs. ExPASy Swiss-Prot
Match: RL23A_FRIAG (60S ribosomal protein L23A OS=Fritillaria agrestis GN=RPL23A PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.126e-29
Identity = 66/86 (76.74%), Postives = 67/86 (77.91%), Query Frame = 1
Query:    1 LDHYQILKYPLTTESAMKKIEDNNTLVFXXXXXXXXXXXXXXXXXMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVANKIGII 258
            LDHYQILKYPLTTESAMKKIEDNNTLVF                 MYDIQ KKVNTLIRPDGTKKAYVRLTPD DALD+ANKIGII
Sbjct:   69 LDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDIANKIGII 154          
BLAST of EY685334 vs. ExPASy Swiss-Prot
Match: RL23A_DAUCA (60S ribosomal protein L23a OS=Daucus carota GN=RPL23A PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 7.300e-29
Identity = 66/86 (76.74%), Postives = 66/86 (76.74%), Query Frame = 1
Query:    1 LDHYQILKYPLTTESAMKKIEDNNTLVFXXXXXXXXXXXXXXXXXMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVANKIGII 258
            LD YQILKYPLTTESAMKKIEDNNTLVF                 MYDIQ KKVNTLIRPDGTKKAYVRLTPD DALDVANKIGII
Sbjct:   69 LDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154          
BLAST of EY685334 vs. ExPASy Swiss-Prot
Match: RL23A_TOBAC (60S ribosomal protein L23a OS=Nicotiana tabacum GN=RPL23A PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 4.732e-28
Identity = 65/86 (75.58%), Postives = 65/86 (75.58%), Query Frame = 1
Query:    1 LDHYQILKYPLTTESAMKKIEDNNTLVFXXXXXXXXXXXXXXXXXMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVANKIGII 258
            LD Y ILKYPLTTESAMKKIEDNNTLVF                 MYDIQ KKVNTLIRPDGTKKAYVRLTPD DALDVANKIGII
Sbjct:   69 LDQYGILKYPLTTESAMKKIEDNNTLVFIVDIKADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154          
BLAST of EY685334 vs. ExPASy Swiss-Prot
Match: RL23A_RAT (60S ribosomal protein L23a OS=Rattus norvegicus GN=Rpl23a PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.683e-25
Identity = 59/86 (68.60%), Postives = 62/86 (72.09%), Query Frame = 1
Query:    1 LDHYQILKYPLTTESAMKKIEDNNTLVFXXXXXXXXXXXXXXXXXMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVANKIGII 258
            LDHY I+K+PLTTESAMKKIEDNNTLVF                 +YDI   KVNTLIRPDG KKAYVRL PD DALDVANKIGII
Sbjct:   71 LDHYAIIKFPLTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVANKIGII 156          
BLAST of EY685334 vs. ExPASy Swiss-Prot
Match: RL23A_MOUSE (60S ribosomal protein L23a OS=Mus musculus GN=Rpl23a PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.683e-25
Identity = 59/86 (68.60%), Postives = 62/86 (72.09%), Query Frame = 1
Query:    1 LDHYQILKYPLTTESAMKKIEDNNTLVFXXXXXXXXXXXXXXXXXMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVANKIGII 258
            LDHY I+K+PLTTESAMKKIEDNNTLVF                 +YDI   KVNTLIRPDG KKAYVRL PD DALDVANKIGII
Sbjct:   71 LDHYAIIKFPLTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVANKIGII 156          
BLAST of EY685334 vs. ExPASy Swiss-Prot
Match: RL23A_HUMAN (60S ribosomal protein L23a OS=Homo sapiens GN=RPL23A PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.683e-25
Identity = 59/86 (68.60%), Postives = 62/86 (72.09%), Query Frame = 1
Query:    1 LDHYQILKYPLTTESAMKKIEDNNTLVFXXXXXXXXXXXXXXXXXMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVANKIGII 258
            LDHY I+K+PLTTESAMKKIEDNNTLVF                 +YDI   KVNTLIRPDG KKAYVRL PD DALDVANKIGII
Sbjct:   71 LDHYAIIKFPLTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVANKIGII 156          
BLAST of EY685334 vs. ExPASy Swiss-Prot
Match: RL23A_BOVIN (60S ribosomal protein L23a OS=Bos taurus GN=RPL23A PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.683e-25
Identity = 59/86 (68.60%), Postives = 62/86 (72.09%), Query Frame = 1
Query:    1 LDHYQILKYPLTTESAMKKIEDNNTLVFXXXXXXXXXXXXXXXXXMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVANKIGII 258
            LDHY I+K+PLTTESAMKKIEDNNTLVF                 +YDI   KVNTLIRPDG KKAYVRL PD DALDVANKIGII
Sbjct:   71 LDHYAIIKFPLTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVANKIGII 156          
BLAST of EY685334 vs. ExPASy Swiss-Prot
Match: R23A1_CAEEL (60S ribosomal protein L23a 1 OS=Caenorhabditis elegans GN=rpl-25.1 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.129e-20
Identity = 50/86 (58.14%), Postives = 62/86 (72.09%), Query Frame = 1
Query:    1 LDHYQILKYPLTTESAMKKIEDNNTLVFXXXXXXXXXXXXXXXXXMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVANKIGII 258
            +DH++I+++PLTTESAMKKIE++NTLVF                 +Y++QA KVNTLI P   KKAYVRLT D DALDVANKIG+I
Sbjct:   62 MDHFRIIQHPLTTESAMKKIEEHNTLVFIVSNDANKYQIKDAVHKLYNVQALKVNTLITPLQQKKAYVRLTADYDALDVANKIGVI 147          
The following BLAST results are available for this feature:
BLAST of EY685334 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
R23A2_ARATH8.623e-3077.9160S ribosomal protein L23a-2 OS=Arabidopsis thalia... [more]
R23A1_ARATH8.623e-3077.9160S ribosomal protein L23a-1 OS=Arabidopsis thalia... [more]
RL23A_FRIAG1.126e-2976.7460S ribosomal protein L23A OS=Fritillaria agrestis... [more]
RL23A_DAUCA7.300e-2976.7460S ribosomal protein L23a OS=Daucus carota GN=RPL... [more]
RL23A_TOBAC4.732e-2875.5860S ribosomal protein L23a OS=Nicotiana tabacum GN... [more]
RL23A_RAT1.683e-2568.6060S ribosomal protein L23a OS=Rattus norvegicus GN... [more]
RL23A_MOUSE1.683e-2568.6060S ribosomal protein L23a OS=Mus musculus GN=Rpl2... [more]
RL23A_HUMAN1.683e-2568.6060S ribosomal protein L23a OS=Homo sapiens GN=RPL2... [more]
RL23A_BOVIN1.683e-2568.6060S ribosomal protein L23a OS=Bos taurus GN=RPL23A... [more]
R23A1_CAEEL2.129e-2058.1460S ribosomal protein L23a 1 OS=Caenorhabditis ele... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-013-G04-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685334 ID=EY685334; Name=EY685334; organism=Citrus sinensis; type=EST; length=493bp
CTTGACCATTATCAGATTCTCAAGTACCCACTCACCACTGAATCAGCAAT
GAAGAAAATTGAAGACAACAATACTCTGGTTTTCATTGTTGACATACGGG
CTGATAAGAAAAAGATAAAGGATGCAGTTAAGAAGATGTATGATATCCAG
GCTAAGAAAGTGAATACCTTGATCAGGCCCGATGGTACAAAGAAGGCTTA
TGTCAGGTTGACACCAGACTCTGATGCTTTGGACGTAGCAAACAAGATTG
GAATCATTTAAACAATTGATCTTTCATTCACATTTTTGTGTATTTTTTAA
TCCAAAAAGTTAGTTATGTTAAGACCTCAAACAAAGATTTCCAAATTTGT
TCCTGTTAACTGTTTATGAATTTTATCCCCTGCATTAACAAATTGGTGGG
TGCATGAAATAATGCACTGGTCTGATAATGCTATTAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAG
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