EY685331

Overview
NameEY685331
Unique NameEY685331
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length882
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY685331 vs. ExPASy Swiss-Prot
Match: TAF10_MOUSE (Transcription initiation factor TFIID subunit 10 OS=Mus musculus GN=Taf10 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.218e-19
Identity = 48/104 (46.15%), Postives = 65/104 (62.50%), Query Frame = 3
Query:  105 LTEFLSSLMGYTPTIPDELVEHYLAKSGFQCPDVRLIRLVAVATQKFVAEVATDALQQCKARQAAVVXXXXXXXXXXXXLILTMEDLSKALREYGVNVKHQEYF 416
            L +FL  L  YTPTIPD +  +YL ++GF+  D R+IRL+++A QKF++++A DALQ CK +  A                LTMEDL+ AL EYG+NVK   YF
Sbjct:  116 LVDFLMQLEDYTPTIPDAVTGYYLNRAGFEASDPRIIRLISLAAQKFISDIANDALQHCKMKGTA--SGSSRSKSKDRKYTLTMEDLTPALSEYGINVKKPHYF 217          
BLAST of EY685331 vs. ExPASy Swiss-Prot
Match: TAF10_HUMAN (Transcription initiation factor TFIID subunit 10 OS=Homo sapiens GN=TAF10 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.218e-19
Identity = 48/104 (46.15%), Postives = 65/104 (62.50%), Query Frame = 3
Query:  105 LTEFLSSLMGYTPTIPDELVEHYLAKSGFQCPDVRLIRLVAVATQKFVAEVATDALQQCKARQAAVVXXXXXXXXXXXXLILTMEDLSKALREYGVNVKHQEYF 416
            L +FL  L  YTPTIPD +  +YL ++GF+  D R+IRL+++A QKF++++A DALQ CK +  A                LTMEDL+ AL EYG+NVK   YF
Sbjct:  116 LVDFLMQLEDYTPTIPDAVTGYYLNRAGFEASDPRIIRLISLAAQKFISDIANDALQHCKMKGTA--SGSSRSKSKDRKYTLTMEDLTPALSEYGINVKKPHYF 217          
BLAST of EY685331 vs. ExPASy Swiss-Prot
Match: TAFAB_DROME (Transcription initiation factor TFIID subunit 10b OS=Drosophila melanogaster GN=Taf10b PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.559e-16
Identity = 43/104 (41.35%), Postives = 61/104 (58.65%), Query Frame = 3
Query:  105 LTEFLSSLMGYTPTIPDELVEHYLAKSGFQCPDVRLIRLVAVATQKFVAEVATDALQQCKAR-QAAVVXXXXXXXXXXXXLILTMEDLSKALREYGVNVKHQEY 413
            L++F+S L  YTP IPD +  HYL   GFQ  D R++RL+++A QK+++++  DALQ  KAR                    LTMEDL  AL +YG+NV+  +Y
Sbjct:   41 LSDFMSQLEDYTPLIPDAVTSHYLNMGGFQSDDKRIVRLISLAAQKYMSDIIDDALQHSKARTHMQTTNTPGGSKAKDRKFTLTMEDLQPALADYGINVRKVDY 144          
BLAST of EY685331 vs. ExPASy Swiss-Prot
Match: TAF10_SCHPO (Transcription initiation factor TFIID subunit 10 OS=Schizosaccharomyces pombe GN=taf10 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.336e-14
Identity = 44/125 (35.20%), Postives = 65/125 (52.00%), Query Frame = 3
Query:   96 DAALTEFLSSLMGYTPTIPDELVEHYLAKSGFQCPDVRLIRLVAVATQKFVAEVATDALQQCKARQ------------------AAVVXXXXXXXXXXXXLILTMEDLSKALREYGVNVKHQEYF 416
            D  L  FL+ +  Y+P IPD L+++YL+ SGF+C D RL +L+ +  QKF+++VA DA Q  K R                    A               +LT++DLS AL EYG+N+K  ++F
Sbjct:   90 DKTLENFLAQMDDYSPLIPDVLLDYYLSLSGFKCVDPRLKKLLGLTAQKFISDVAQDAYQYSKIRTGSSNASSTTFGAQNFGAGGASGIGSSGRRGDRGKTVLTVDDLSAALNEYGINLKRPDFF 214          
BLAST of EY685331 vs. ExPASy Swiss-Prot
Match: TAF10_DROME (Transcription initiation factor TFIID subunit 10 OS=Drosophila melanogaster GN=Taf10 PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.553e-13
Identity = 39/114 (34.21%), Postives = 62/114 (54.39%), Query Frame = 3
Query:   93 DDAALTEFLSSLMGYTPTIPDELVEHYLAKSGFQCPDVRLIRLVAVATQKFVAEVATDALQQCKARQAAV------VXXXXXXXXXXXXLILTMEDLSKALREYGVNVKHQEYF 416
            +++ + E +  L  Y+PTIPD L  H L  +GF   D +++RLV+V+ QKF++++A DALQ CK R   +                     L MEDL  AL ++G+ ++  +YF
Sbjct:   53 EESEMDELIKQLEDYSPTIPDALTMHILKTAGFCTVDPKIVRLVSVSAQKFISDIANDALQHCKTRTTNIQHSSGHSSSKDKKNPKDRKYTLAMEDLVPALADHGITMRKPQYF 166          
BLAST of EY685331 vs. ExPASy Swiss-Prot
Match: TAF10_YEAST (Transcription initiation factor TFIID subunit 10 OS=Saccharomyces cerevisiae GN=TAF10 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.113e-11
Identity = 41/135 (30.37%), Postives = 64/135 (47.41%), Query Frame = 3
Query:   96 DAALTEFLSSLMGYTPTIPDELVEHYLAKSGFQCPDVRLIRLVAVATQKFVAEVATDALQQCKARQAAVVXXXXXXXXXXXXL----------------------------ILTMEDLSKALREYGVNVKHQEYF 416
            D  L E L  +    P IPD ++++YL K+GF   DVR+ RL+A+ATQKFV+++A DA +  + R +  V            L                            +LT+ DLS A+ EYG+N+   +++
Sbjct:   71 DKTLEEILEMMDSTPPIIPDAVIDYYLTKNGFNVADVRVKRLLALATQKFVSDIAKDAYEYSRIRSSVAVSNANNSQARARQLLQGQQQPGVQQISQQQHQQNEKTTASKVVLTVNDLSSAVAEYGLNIGRPDFY 205          
The following BLAST results are available for this feature:
BLAST of EY685331 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
TAF10_MOUSE4.218e-1946.15Transcription initiation factor TFIID subunit 10 O... [more]
TAF10_HUMAN4.218e-1946.15Transcription initiation factor TFIID subunit 10 O... [more]
TAFAB_DROME2.559e-1641.35Transcription initiation factor TFIID subunit 10b ... [more]
TAF10_SCHPO5.336e-1435.20Transcription initiation factor TFIID subunit 10 O... [more]
TAF10_DROME1.553e-1334.21Transcription initiation factor TFIID subunit 10 O... [more]
TAF10_YEAST1.113e-1130.37Transcription initiation factor TFIID subunit 10 O... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C2-003-013-G01-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685331 ID=EY685331; Name=EY685331; organism=Citrus sinensis; type=EST; length=882bp
CCACGCGTCCGAAAAGAAGGAGAAGGGACCCCTTTTAAGAAAGAATGAAT
CATAATAACAACTTCCAGCAGTCCATCGATGGAAGGCACGACGATGATGC
AGCGCTCACTGAATTTCTATCGTCGTTAATGGGCTATACTCCCACCATAC
CTGATGAGTTGGTGGAGCACTACTTAGCCAAGAGCGGGTTTCAATGTCCC
GATGTTAGATTAATTAGGCTGGTAGCTGTTGCTACGCAGAAGTTTGTTGC
TGAGGTTGCTACTGATGCTCTTCAGCAATGCAAGGCAAGGCAGGCAGCAG
TGGTCAAGGACAAAAGGGACAAGCAGCAGAAGGATAAACGTTTGATATTA
ACAATGGAGGATCTCTCGAAGGCACTGCGTGAGTATGGCGTGAACGTGAA
GCACCAGGAGTATTTTGCTGATAACCCTTCAACCGGGATGGATCCTGCTT
CAAAAGAAGAGTGAGCTGATGTTGAAGTGGTGCAACATGATCAAGTTCAT
CTATTTGTTATATGTTTTTGACACTGCTGGTGCTCTAGCTGGCTGTTGAC
ACCTTGCATACCGTTTGGTATCTGAGAAGACACCTAATTAATGTTTTTTA
AATACATATCTTGGATATTTTCCTCCCGACCCTTCTTTTGAAGGTGAGCT
TAGCTTTAGCAATCCGTCTGTATTTCCCACGCCTCACAGCTCAGCCACGC
TCCGCACCCTCTGCTAGAAACAAGGACGCTAAGTCGCCGACCTCGCCTAC
ACACCCAAACCGTACACGACCCCAACACGCCACACGCAGGACACACCAAC
ACCTGCACACTCCCACCATCCTAGCTCATCACGCAACCTTGCTAAGCACA
AACAATAGCCTGACCGTGACTACTCGCGTACC
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