EY685320

Overview
NameEY685320
Unique NameEY685320
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length947
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY685320_ssr617 microsatellite EY685320_ssr617:617..628. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8839 contig Csv1_Contig8839:1..941. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY685320 vs. ExPASy Swiss-Prot
Match: BIP2_TOBAC (Luminal-binding protein 2 (Fragment) OS=Nicotiana tabacum GN=BIP2 PE=2 SV=1)

HSP 1 Score: 355.14 bits (910), Expect = 3.290e-97
Identity = 179/199 (89.95%), Postives = 184/199 (92.46%), Query Frame = 2 
Query:   11 AQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQXXXXXXXXXXXXFAEEDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPGAGT 607
            +QVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDL+GI PAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQ            FAEEDKKVKE+IDARNSLETYVYNMKNQINDKDKLADKLESDEK+KIETA KEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPG G+
Sbjct:   81 SQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLTGIAPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQEEIERMVREAEEFAEEDKKVKERIDARNSLETYVYNMKNQINDKDKLADKLESDEKEKIETATKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPGGGS 279
[Close]
BLAST of EY685320 vs. ExPASy Swiss-Prot
Match: BIP1_TOBAC (Luminal-binding protein 1 (Fragment) OS=Nicotiana tabacum GN=BIP1 PE=2 SV=1)

HSP 1 Score: 354.755 bits (909), Expect = 4.297e-97
Identity = 178/199 (89.45%), Postives = 184/199 (92.46%), Query Frame = 2 
Query:   11 AQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQXXXXXXXXXXXXFAEEDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPGAGT 607
            +QVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDL+GI PAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQ            FAEEDKKVKE+IDARNSLETYVYNMKNQINDKDKLADKLESDEK+KIETA KEALEWLDDNQSAEKEDYEEKLKEVEA+CNPIITAVYQRSGGAPG G+
Sbjct:   81 SQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLTGIAPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQEEIERMVREAEEFAEEDKKVKERIDARNSLETYVYNMKNQINDKDKLADKLESDEKEKIETATKEALEWLDDNQSAEKEDYEEKLKEVEAICNPIITAVYQRSGGAPGGGS 279
[Close]
BLAST of EY685320 vs. ExPASy Swiss-Prot
Match: BIP_SOLLC (Luminal-binding protein OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 352.829 bits (904), Expect = 1.633e-96
Identity = 177/198 (89.39%), Postives = 183/198 (92.42%), Query Frame = 2 
Query:   11 AQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQXXXXXXXXXXXXFAEEDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPGAG 604
            +QVFTTYQDQQTTVSIQVFEGERSLTKDCR LGKFDL+GIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGK+EKITITNDKGRLSQ            FAEEDKKVKEKIDARN+LETYVYNMKNQINDKDKLADKLESDEK+KIETA KEALEWLDDNQSAEKEDY+EKLKEVEAVCNPIITAVYQRSGGAPG G
Sbjct:  457 SQVFTTYQDQQTTVSIQVFEGERSLTKDCRNLGKFDLTGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKAEKITITNDKGRLSQEEIERMVREAEEFAEEDKKVKEKIDARNALETYVYNMKNQINDKDKLADKLESDEKEKIETATKEALEWLDDNQSAEKEDYDEKLKEVEAVCNPIITAVYQRSGGAPGGG 654
[Close]
BLAST of EY685320 vs. ExPASy Swiss-Prot
Match: BIP5_TOBAC (Luminal-binding protein 5 OS=Nicotiana tabacum GN=BIP5 PE=2 SV=1)

HSP 1 Score: 345.51 bits (885), Expect = 2.607e-94
Identity = 173/200 (86.50%), Postives = 182/200 (91.00%), Query Frame = 2 
Query:   11 AQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQXXXXXXXXXXXXFAEEDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPGAGTE 610
            +QVFTTYQDQQTTV+I VFEGERSLTKDCRLLGKFDL+GI PAPRGTPQIEVTFEVDANGILNVKAEDK +GKSEKITITNDKGRLSQ            FAEEDKKVKE+IDARNSLETYVYNM+NQINDKDKLADKLESDEK+KIETA KEALEWLDDNQSAEKEDY+EKLKEVEAVCNPIITAVYQRSGGAPG  +E
Sbjct:  457 SQVFTTYQDQQTTVTISVFEGERSLTKDCRLLGKFDLTGIAPAPRGTPQIEVTFEVDANGILNVKAEDKASGKSEKITITNDKGRLSQEEIERMVKEAEEFAEEDKKVKERIDARNSLETYVYNMRNQINDKDKLADKLESDEKEKIETATKEALEWLDDNQSAEKEDYDEKLKEVEAVCNPIITAVYQRSGGAPGGASE 656
[Close]
BLAST of EY685320 vs. ExPASy Swiss-Prot
Match: BIP8_TOBAC (Luminal-binding protein 8 (Fragment) OS=Nicotiana tabacum GN=BIP8 PE=2 SV=1)

HSP 1 Score: 345.125 bits (884), Expect = 3.405e-94
Identity = 173/196 (88.27%), Postives = 181/196 (92.35%), Query Frame = 2 
Query:   11 AQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQXXXXXXXXXXXXFAEEDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPG 598
            +QVFTTYQDQQTTV+IQVFEGERSLTKDCRLLGKFDL+GI PAPRGTPQIEVTFEVDANGILNVKAEDK +GKSEKITITNDKGRLSQ            FAEEDKKVKE+IDARNSLETYVYNM+NQINDKDKLADKLESDEK+KIETA KEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQ+SGGAPG
Sbjct:   84 SQVFTTYQDQQTTVTIQVFEGERSLTKDCRLLGKFDLTGIAPAPRGTPQIEVTFEVDANGILNVKAEDKASGKSEKITITNDKGRLSQEEIERMVKEAEEFAEEDKKVKERIDARNSLETYVYNMRNQINDKDKLADKLESDEKEKIETATKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQKSGGAPG 279
[Close]
BLAST of EY685320 vs. ExPASy Swiss-Prot
Match: BIP4_TOBAC (Luminal-binding protein 4 OS=Nicotiana tabacum GN=BIP4 PE=2 SV=1)

HSP 1 Score: 345.125 bits (884), Expect = 3.405e-94
Identity = 173/196 (88.27%), Postives = 181/196 (92.35%), Query Frame = 2 
Query:   11 AQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQXXXXXXXXXXXXFAEEDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPG 598
            +QVFTTYQDQQTTV+IQVFEGERSLTKDCRLLGKFDL+GI PAPRGTPQIEVTFEVDANGILNVKAEDK +GKSEKITITNDKGRLSQ            FAEEDKKVKE+IDARNSLETYVYNM+NQINDKDKLADKLESDEK+KIETA KEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQ+SGGAPG
Sbjct:  458 SQVFTTYQDQQTTVTIQVFEGERSLTKDCRLLGKFDLTGIAPAPRGTPQIEVTFEVDANGILNVKAEDKASGKSEKITITNDKGRLSQEEIERMVKEAEEFAEEDKKVKERIDARNSLETYVYNMRNQINDKDKLADKLESDEKEKIETATKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQKSGGAPG 653
[Close]
BLAST of EY685320 vs. ExPASy Swiss-Prot
Match: BIP2_ARATH (Luminal-binding protein 2 OS=Arabidopsis thaliana GN=At5g42020 PE=1 SV=2)

HSP 1 Score: 342.428 bits (877), Expect = 2.207e-93
Identity = 169/200 (84.50%), Postives = 183/200 (91.50%), Query Frame = 2 
Query:   11 AQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQXXXXXXXXXXXXFAEEDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPGAGTE 610
            +QVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDL+G+PPAPRGTPQIEVTFEVDANGILNVKAEDK +GKSEKITITN+KGRLSQ            FAEEDKKVKEKIDARN+LETYVYNMKNQ++DKDKLADKLE DEK+KIE A KEALEWLD+NQ++EKE+Y+EKLKEVEAVCNPIITAVYQRSGGAPGAG E
Sbjct:  456 SQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLTGVPPAPRGTPQIEVTFEVDANGILNVKAEDKASGKSEKITITNEKGRLSQEEIDRMVKEAEEFAEEDKKVKEKIDARNALETYVYNMKNQVSDKDKLADKLEGDEKEKIEAATKEALEWLDENQNSEKEEYDEKLKEVEAVCNPIITAVYQRSGGAPGAGGE 655
[Close]
BLAST of EY685320 vs. ExPASy Swiss-Prot
Match: BIP1_ARATH (Luminal-binding protein 1 OS=Arabidopsis thaliana GN=At5g28540 PE=1 SV=1)

HSP 1 Score: 340.117 bits (871), Expect = 1.095e-92
Identity = 171/201 (85.07%), Postives = 183/201 (91.04%), Query Frame = 2 
Query:   11 AQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQXXXXXXXXXXXXFAEEDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAP-GAGTE 610
            +QVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDL+GIPPAPRGTPQIEVTFEVDANGILNVKAEDK +GKSEKITITN+KGRLSQ            FAEEDKKVKEKIDARN+LETYVYNMKNQ+NDKDKLADKLE DEK+KIE A KEALEWLD+NQ++EKE+Y+EKLKEVEAVCNPIITAVYQRSGGAP GAG E
Sbjct:  456 SQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLNGIPPAPRGTPQIEVTFEVDANGILNVKAEDKASGKSEKITITNEKGRLSQEEIDRMVKEAEEFAEEDKKVKEKIDARNALETYVYNMKNQVNDKDKLADKLEGDEKEKIEAATKEALEWLDENQNSEKEEYDEKLKEVEAVCNPIITAVYQRSGGAPGGAGGE 656
[Close]
BLAST of EY685320 vs. ExPASy Swiss-Prot
Match: BIP3_MAIZE (Luminal-binding protein 3 OS=Zea mays GN=BIPE3 PE=2 SV=1)

HSP 1 Score: 337.035 bits (863), Expect = 9.272e-92
Identity = 166/200 (83.00%), Postives = 180/200 (90.00%), Query Frame = 2 
Query:   11 AQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQXXXXXXXXXXXXFAEEDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPGAGTE 610
            +QVFTTYQDQQTTVSIQVFEGERS+TKDCRLLGKFDL+GIP APRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITN+KGRLSQ            FAEEDKKVKE+IDARN LETYVYNMKN + DKDKLADKLE++EK+K+E A+KEALEWLDDNQSAEKEDYEEKLKEVEAVCNPI++AVYQRSGGAPG   +
Sbjct:  454 SQVFTTYQDQQTTVSIQVFEGERSMTKDCRLLGKFDLNGIPSAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNEKGRLSQEEIDRMVREAEEFAEEDKKVKERIDARNQLETYVYNMKNTVGDKDKLADKLEAEEKEKVEEALKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIVSAVYQRSGGAPGGDAD 653
[Close]
BLAST of EY685320 vs. ExPASy Swiss-Prot
Match: BIP2_MAIZE (Luminal-binding protein 2 OS=Zea mays GN=BIPE2 PE=1 SV=3)

HSP 1 Score: 337.035 bits (863), Expect = 9.272e-92
Identity = 166/200 (83.00%), Postives = 180/200 (90.00%), Query Frame = 2 
Query:   11 AQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQXXXXXXXXXXXXFAEEDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPGAGTE 610
            +QVFTTYQDQQTTVSIQVFEGERS+TKDCRLLGKFDL+GI PAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITN+KGRLSQ            FAEEDKKVKE+IDARN LETYVYNMKN + DKDKLADKLE++EK+K+E A+KEALEWLDDNQSAEKEDYEEKLKEVEAVCNPI++AVYQRSGGAPG   +
Sbjct:  454 SQVFTTYQDQQTTVSIQVFEGERSMTKDCRLLGKFDLNGIAPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNEKGRLSQEEIDRMVREAEEFAEEDKKVKERIDARNQLETYVYNMKNTVGDKDKLADKLEAEEKEKVEEALKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIVSAVYQRSGGAPGGDAD 653
The following BLAST results are available for this feature:
BLAST of EY685320 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
BIP2_TOBAC3.290e-9789.95Luminal-binding protein 2 (Fragment) OS=Nicotiana ... [more]
BIP1_TOBAC4.297e-9789.45Luminal-binding protein 1 (Fragment) OS=Nicotiana ... [more]
BIP_SOLLC1.633e-9689.39Luminal-binding protein OS=Solanum lycopersicum PE... [more]
BIP5_TOBAC2.607e-9486.50Luminal-binding protein 5 OS=Nicotiana tabacum GN=... [more]
BIP8_TOBAC3.405e-9488.27Luminal-binding protein 8 (Fragment) OS=Nicotiana ... [more]
BIP4_TOBAC3.405e-9488.27Luminal-binding protein 4 OS=Nicotiana tabacum GN=... [more]
BIP2_ARATH2.207e-9384.50Luminal-binding protein 2 OS=Arabidopsis thaliana ... [more]
BIP1_ARATH1.095e-9285.07Luminal-binding protein 1 OS=Arabidopsis thaliana ... [more]
BIP3_MAIZE9.272e-9283.00Luminal-binding protein 3 OS=Zea mays GN=BIPE3 PE=... [more]
BIP2_MAIZE9.272e-9283.00Luminal-binding protein 2 OS=Zea mays GN=BIPE2 PE=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-013-E06-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685320 ID=EY685320; Name=EY685320; organism=Citrus sinensis; type=EST; length=947bp
CCACGCGTCCGCTCAAGTTTTCACCACTTATCAAGACCAGCAGACTACAG
TTTCCATTCAGGTTTTTGAAGGTGAAAGGAGTCTCACAAAGGATTGCAGA
TTGCTTGGGAAATTCGATCTTTCTGGAATTCCTCCAGCTCCTAGGGGAAC
CCCTCAAATTGAAGTCACATTTGAAGTTGATGCAAATGGTATCTTAAATG
TAAAGGCAGAAGACAAGGGCACAGGCAAATCAGAGAAAATTACCATCACA
AATGACAAGGGTCGCCTGAGCCAGGAGGAGATTGAGCGTATGGTTCGTGA
GGCTGAAGAATTTGCCGAGGAGGACAAGAAAGTAAAGGAGAAGATCGATG
CTCGCAACAGCCTTGAGACCTATGTCTATAACATGAAAAACCAGATTAAT
GACAAGGACAAGCTTGCCGACAAGCTCGAATCTGATGAGAAGGACAAGAT
TGAAACTGCTGTAAAGGAAGCCCTTGAATGGCTCGATGACAACCAGAGCG
CAGAGAAAGAGGACTATGAAGAGAAGCTCAAGGAGGTTGAAGCCGTTTGC
AACCCCATCATCACTGCTGTATATCAGAGATCTGGCGGAGCCCCCGGTGC
TGGCACTGAATCATCGGATGATGATGATTCACACGATGAGCTCTAAAGAA
ATTTTTACTTTCGATTGACCATATTGCCAAAACTGGTCAAGAGGCTAAAA
TTGAGTAAAATAGGCTTTTTAGATTATCTGAGGGAACTTACTGGTATTTT
TTCTCGTGGTAAGAGAAATAAAAGGGAGGGGGAATTTCCCTTTCTTCCCG
GGTTTTTTGGGATGGGAAAAACCTTTAAGGGATTTTTTCTTATTTTCTTT
ACTAGGGGTTTCCTTCAAAATTAATTGAACGTTTCTTCCAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGG
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