EY685319

Overview
NameEY685319
Unique NameEY685319
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length926
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY685319 vs. ExPASy Swiss-Prot
Match: BIM2_ARATH (Transcription factor BIM2 OS=Arabidopsis thaliana GN=BIM2 PE=1 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 4.350e-46
Identity = 104/213 (48.83%), Postives = 137/213 (64.32%), Query Frame = 2 
Query:   14 NSHWRVQNFATQPHAIKNGSGPGSMFPGKFDDNSISMSPTMLTSTQTPVESDPNRDIACKPMDRQPEVANKGISISMPLQGNLPAPARSDSVLLHPLQRPVSDAQSNECPATTDTMNQQEELTVEGGTINISSIYSQGLLNNLTQALESAGIDLSQANISVQIDLGKRANRGLMPEASVAKDLENPPSINQAMAQLRDVSSGEDSDHSQKRLR 652
            N+HWRVQ+    P AI NGSGPG  FPGKF+DN+++ +P ++   Q P+ESD  R I    ++ QPE+ +KG+    PLQ  LP                V   Q+NECPAT+D + Q  +L +EGGTI+ISS YS  LL++LTQAL++AGIDLSQA +SVQIDLGKRAN+GL  E   +K   NP S +    Q RD S  E+S+HS KR++
Sbjct:  121 NNHWRVQSLGNHPVAINNGSGPGIPFPGKFEDNTVTSTPAIIAEPQIPIESDKARAITGISIESQPELDDKGLP---PLQPILPM---------------VQGEQANECPATSDGLGQSNDLVIEGGTISISSAYSHELLSSLTQALQNAGIDLSQAKLSVQIDLGKRANQGLTHEEPSSK---NPLSYD---TQGRDSSVEEESEHSHKRMK 309
The following BLAST results are available for this feature:
BLAST of EY685319 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
BIM2_ARATH4.350e-4648.83Transcription factor BIM2 OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C2-003-013-E03-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685319 ID=EY685319; Name=EY685319; organism=Citrus sinensis; type=EST; length=926bp
CCACGCGTCCGGAAATAGTCACTGGCGTGTCCAGAATTTTGCCACTCAAC
CTCATGCAATAAAAAATGGTTCTGGTCCAGGGTCTATGTTTCCTGGGAAG
TTTGATGACAATAGCATCAGTATGTCCCCAACCATGCTTACTAGCACACA
GACTCCTGTAGAATCTGATCCTAACCGGGATATTGCCTGCAAACCAATGG
ATCGGCAACCTGAGGTGGCAAACAAGGGAATATCTATATCCATGCCTTTA
CAGGGAAATTTGCCTGCTCCTGCCCGAAGTGATAGTGTGCTGCTGCATCC
TCTTCAGAGACCAGTCTCTGATGCACAGTCAAATGAGTGTCCTGCTACTA
CTGATACAATGAACCAACAGGAAGAGCTGACAGTTGAAGGGGGGACGATC
AATATATCAAGCATATACTCACAGGGGTTGTTAAACAATTTGACACAAGC
ATTGGAGAGTGCTGGTATAGATCTGTCGCAGGCCAACATCTCCGTGCAGA
TTGATCTTGGGAAGAGAGCAAACAGAGGGCTCATGCCTGAGGCATCTGTT
GCGAAGGACTTGGAAAATCCGCCATCGATCAATCAAGCAATGGCCCAACT
TAGGGATGTAAGCAGCGGAGAGGATTCAGATCACAGTCAAAAGCGGTTGA
GGAGATAAGAATATTATGGATTTCCTGAATCTTTTCTTCTCACCCAGTTT
CTTCTTCCTTTCCAACCTTTTCCGTTTGGGTTTTCCCGGAAAATTACGGA
AAGACCGATGCATTTAAATTTCCTTGGGCGTTACCCAATTTTTTGGGGAT
CAGGGGCTTTACCGTCGAGCAACACAAAAACCGGACTAATTAGGAGCAGA
ATGCCGGGGGGCCCCGAATCCCCGCACATGTGGCCGGAACGCAAACCAAG
GTCAGCGCAAACAAAGAAAACAGGGC
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