EY685314

Overview
NameEY685314
Unique NameEY685314
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length667
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY685314 vs. ExPASy Swiss-Prot
Match: RNR_SHIFL (Ribonuclease R OS=Shigella flexneri GN=rnr PE=3 SV=4)

HSP 1 Score: 82.4185 bits (202), Expect = 2.305e-15
Identity = 39/81 (48.15%), Postives = 58/81 (71.60%), Query Frame = -2
Query:    4 KVGQFVGVQVARRPTARFQPQGDIVEVVGTSPAPGMEIDVALRTYDIPHVWPEAVLKEAAKLKPEVEEKDKEKRIDLRHLP 246
            ++G  V V++ +RPT R +  G IVEV+G +   GM +D+ALRT++IP++WP+AV ++ A LK EV E+ K  R+DLR LP
Sbjct:  187 RMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLP 267          
BLAST of EY685314 vs. ExPASy Swiss-Prot
Match: RNR_ECOLI (Ribonuclease R OS=Escherichia coli (strain K12) GN=rnr PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.305e-15
Identity = 39/81 (48.15%), Postives = 58/81 (71.60%), Query Frame = -2
Query:    4 KVGQFVGVQVARRPTARFQPQGDIVEVVGTSPAPGMEIDVALRTYDIPHVWPEAVLKEAAKLKPEVEEKDKEKRIDLRHLP 246
            ++G  V V++ +RPT R +  G IVEV+G +   GM +D+ALRT++IP++WP+AV ++ A LK EV E+ K  R+DLR LP
Sbjct:  187 RMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLP 267          
BLAST of EY685314 vs. ExPASy Swiss-Prot
Match: RNR_THIFE (Ribonuclease R (Fragment) OS=Thiobacillus ferrooxidans GN=rnr PE=3 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.652e-13
Identity = 35/79 (44.30%), Postives = 49/79 (62.03%), Query Frame = -2
Query:    4 GQFVGVQVARRPTARFQPQGDIVEVVGTSPAPGMEIDVALRTYDIPHVWPEAVLKEAAKLKPEVEEKDKEKRIDLRHLP 240
            GQ V +++ + P  R  PQG +VE++G   APGME+++A+R Y +PH WP+ VL E  +    V E  K  R DLR LP
Sbjct:  200 GQIVILEITQYPDGRNMPQGHVVEILGEHMAPGMEVEIAVRNYGLPHQWPDEVLAEIKQFSETVPETMKAGRRDLRDLP 278          
BLAST of EY685314 vs. ExPASy Swiss-Prot
Match: RNR_HAEIN (Ribonuclease R OS=Haemophilus influenzae GN=rnr PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.806e-13
Identity = 40/86 (46.51%), Postives = 57/86 (66.28%), Query Frame = -2
Query:    4 RNGAGKVGQFVGVQVARRPTARFQPQGDIVEVVGTSPAPGMEIDVALRTYDIPHVWPEAVLKEAAKLKPEVEEKDKEKRIDLRHLP 261
            RNGA ++GQ V V++  R  +  QP G I E++G + A GME+++ALR +DI H +P AV K   K   EV E+ K+ R+DLR+LP
Sbjct:  191 RNGA-RMGQVVVVELQERSASFNQPIGVITEILGDNMAKGMEVEIALRNHDILHKFPSAVEKYVKKFTEEVSEEAKKGRVDLRNLP 275          
BLAST of EY685314 vs. ExPASy Swiss-Prot
Match: RNR_VIBCH (Ribonuclease R OS=Vibrio cholerae GN=rnr PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.197e-13
Identity = 38/87 (43.68%), Postives = 55/87 (63.22%), Query Frame = -2
Query:    4 VRNGAGKVGQFVGVQVARRPTARFQPQGDIVEVVGTSPAPGMEIDVALRTYDIPHVWPEAVLKEAAKLKPEVEEKDKEKRIDLRHLP 264
            +R GA ++G  V +++  R T      G +VEV+G + APGME  +A+RT+ IPH WP  V ++ A L  EV E+ K+ R+DLR LP
Sbjct:  189 LRAGA-RMGNVVVIEITDRGTRNRGMMGKVVEVLGENMAPGMETQIAIRTHQIPHEWPAEVEQQVAGLTEEVPEEAKQGRVDLRALP 274          
BLAST of EY685314 vs. ExPASy Swiss-Prot
Match: RNR_VIBPA (Ribonuclease R OS=Vibrio parahaemolyticus GN=rnr PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.385e-12
Identity = 35/81 (43.21%), Postives = 51/81 (62.96%), Query Frame = -2
Query:    4 KVGQFVGVQVARRPTARFQPQGDIVEVVGTSPAPGMEIDVALRTYDIPHVWPEAVLKEAAKLKPEVEEKDKEKRIDLRHLP 246
            ++G  V +++  R +      G +VEV+G + APGME  +A+RT+ IP+ WPEAV K+   L  EV E+ K  R+DLR LP
Sbjct:  194 RMGNVVVIEITDRGSRSRGMMGKVVEVLGENMAPGMETQIAIRTHQIPYEWPEAVEKQIVNLGEEVPEEAKVGRVDLRELP 274          
BLAST of EY685314 vs. ExPASy Swiss-Prot
Match: RNR_BUCAP (Ribonuclease R OS=Buchnera aphidicola subsp. Schizaphis graminum GN=rnr PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.637e-11
Identity = 35/97 (36.08%), Postives = 56/97 (57.73%), Query Frame = -2
Query:    1 FRRYLCRLQVRNGAGKVGQFVGVQVARRPTARFQPQGDIVEVVGTSPAPGMEIDVALRTYDIPHVWPEAVLKEAAKLKPEVEEKDKEKRIDLRHLPF 291
            F+ ++    + N    +G  V V++    T + + QG IVEV+G      + I +ALRT+ IP++W + V  +   +K ++ EKD + RIDLRHLPF
Sbjct:  174 FKIFILDSLISNENISIGTIVVVKLRENATKKSKIQGTIVEVLGKEMGTNLAIKIALRTHCIPYLWSKEVEYQLCGIKSKINEKDFKNRIDLRHLPF 270          
The following BLAST results are available for this feature:
BLAST of EY685314 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
RNR_SHIFL2.305e-1548.15Ribonuclease R OS=Shigella flexneri GN=rnr PE=3 SV... [more]
RNR_ECOLI2.305e-1548.15Ribonuclease R OS=Escherichia coli (strain K12) GN... [more]
RNR_THIFE1.652e-1344.30Ribonuclease R (Fragment) OS=Thiobacillus ferrooxi... [more]
RNR_HAEIN4.806e-1346.51Ribonuclease R OS=Haemophilus influenzae GN=rnr PE... [more]
RNR_VIBCH8.197e-1343.68Ribonuclease R OS=Vibrio cholerae GN=rnr PE=3 SV=1[more]
RNR_VIBPA2.385e-1243.21Ribonuclease R OS=Vibrio parahaemolyticus GN=rnr P... [more]
RNR_BUCAP2.637e-1136.08Ribonuclease R OS=Buchnera aphidicola subsp. Schiz... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C2-003-013-D07-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685314 ID=EY685314; Name=EY685314; organism=Citrus sinensis; type=EST; length=667bp
GAACGGCAGATGACGTAGGTCGATGCGCTTCTCTTTGTCTTTTTCTTCAA
CTTCCGGCTTGAGCTTGGCGGCTTCTTTGAGCACAGCCTCAGGCCAGACG
TGAGGGATATCGTAGGTGCGCAGCGCAACATCGATTTCCATGCCCGGCGC
GGGGGAGGTGCCGACCACTTCGACGATATCGCCCTGCGGCTGGAAGCGCG
CAGTTGGCCTGCGCGCGACTTGCACCCCAACGAACTGCCCGACCTTCCCG
GCGCCATTGCGAACCTGAAGGCGACACAAGTAACGACGGAATCCGACATC
CAGACCAAGAAGCAGACGCCTCGCCGCGCTGCGGCGGCGGGGGCAGCTCG
AGCGCACGCCGGCCCAGAGCGCCGCCATCCCCAATCTCGGCCCCCCACCC
ACCATAACACCCAACAGAAAGGGCTCAAACCACCAGCACTGCGACGCTCG
ACGAGCCAAAGAGCGCGCCCAGCGCGAGCACGGAGCCCCAGCAGCAGATA
CGCAGGATATCACAGGCACCAGCGGCCACCCCTCGTCAGAGACCCGCTGC
ACAGGGCAATCAGACGAACAAAAGAGCGTACGTGAGTGCCAACCATTCAG
CCAAGACGCAACCGTTGGCAACAGCGGCACAACTGGGAAGTGCGAGTGCG
ACATGAAAGCCACACCA
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