EY685308

Overview
NameEY685308
Unique NameEY685308
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6249 contig Csv1_Contig6249:142..847. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY685308 vs. ExPASy Swiss-Prot
Match: RBS_LACSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 6.469e-67
Identity = 113/139 (81.29%), Postives = 127/139 (91.37%), Query Frame = 2
Query:   38 NNDITSIASNGGIVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPGV 454
            NND +S+ SNGG VQCMKVWPP GLKK+ETLSYLPPLSDEAL KEI+YLIR+ WIPCLEFELE G+VYREHH SPGYYDGRYWTMWKLPM+GCTD+ QV+KEVGE +KEYP++F+R+IGFDN RQVQCISFI AKPPGV
Sbjct:   42 NNDFSSLPSNGGRVQCMKVWPPIGLKKYETLSYLPPLSDEALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDSAQVMKEVGECKKEYPNAFIRVIGFDNIRQVQCISFIVAKPPGV 180          
BLAST of EY685308 vs. ExPASy Swiss-Prot
Match: RBS_PYRPY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pyrus pyrifolia GN=RBCS PE=2 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 6.694e-64
Identity = 110/148 (74.32%), Postives = 128/148 (86.49%), Query Frame = 2
Query:    8 SADAWGNPHTNNDITSIASNGGIVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 451
            S+ A+     +NDITSIASNGG VQCM+VWPP GLKKFETLSYLPPLS E+L KE++YL+R  W+PCLEFELE G+VYRE+H+SPGYYDGRYWTMWKLPM+GCTD++QVLKE+ E +K YP SF+RIIGFDN RQVQCISFIA KP G
Sbjct:   35 SSSAFPVTRKSNDITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSSESLAKEVDYLLRKNWVPCLEFELETGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSFIRIIGFDNVRQVQCISFIAYKPAG 182          
BLAST of EY685308 vs. ExPASy Swiss-Prot
Match: RBS_MALSP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Malus sp. GN=RBCS PE=2 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 1.948e-63
Identity = 108/138 (78.26%), Postives = 124/138 (89.86%), Query Frame = 2
Query:   38 NNDITSIASNGGIVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 451
            +NDITSIASNGG VQCM+VWPP GLKKFETLSYLPPLS E+L KE++YL+R  W+PCLEFELE G+VYRE+H+SPGYYDGRYWTMWKLPM+GCTD++QVLKE+ E +K YP SF+RIIGFDN RQVQCISFIA KP G
Sbjct:   45 SNDITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSTESLAKEVDYLLRKNWVPCLEFELEHGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSFIRIIGFDNVRQVQCISFIAYKPAG 182          
BLAST of EY685308 vs. ExPASy Swiss-Prot
Match: RBS_BETVE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 5.667e-63
Identity = 110/140 (78.57%), Postives = 124/140 (88.57%), Query Frame = 2
Query:   35 TNNDITSIASNGGIVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPGV 454
            TNNDITSIASNGG VQCM+VWPP GLKKFETLSYLPPLS E L KE++YL+R   IPCLEFELE G+VYREH++SPGYYDGRYWTMWKLPM+GC D++QVLKE+ E +K YP +F+RIIGFDNKRQVQ ISFIA KPPGV
Sbjct:   43 TNNDITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSSEQLAKEVDYLLRKNLIPCLEFELEHGFVYREHNRSPGYYDGRYWTMWKLPMFGCNDSSQVLKELEECKKAYPSAFIRIIGFDNKRQVQIISFIAYKPPGV 182          
BLAST of EY685308 vs. ExPASy Swiss-Prot
Match: RBS_GLYTA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Glycine tabacina GN=RBCS PE=3 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 9.667e-63
Identity = 108/138 (78.26%), Postives = 120/138 (86.96%), Query Frame = 2
Query:   35 TNNDITSIASNGGIVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 448
            TNNDI SIASNGG VQCM+VWP TG KKFETLSYLP L D  L KE+ YL+R GWIPCLEFELE G+VYREHH+SPGYYDGRYWTMWKLPM+GCTDA+QVLKE+ E +  YP++F+RIIGFDN RQVQCISFIA KPP
Sbjct:   39 TNNDIASIASNGGRVQCMQVWPTTGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHHRSPGYYDGRYWTMWKLPMFGCTDASQVLKELQEAKTAYPNAFIRIIGFDNVRQVQCISFIAYKPP 176          
BLAST of EY685308 vs. ExPASy Swiss-Prot
Match: RBS1_SOYBN (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Glycine max GN=RBCS-1 PE=3 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 1.649e-62
Identity = 108/139 (77.70%), Postives = 120/139 (86.33%), Query Frame = 2
Query:   35 TNNDITSIASNGGIVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 451
            TNNDITSIASNGG VQCM+VWPP G KKFETLSYLP L D  L KE+ YL+R GWIPCLEFELE G+VYREH++SP YYDGRYWTMWKLPM+GCTDA+QVLKE+ E +  YP+ F+RIIGFDN RQVQCISFIA KPPG
Sbjct:   39 TNNDITSIASNGGRVQCMQVWPPIGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPXYYDGRYWTMWKLPMFGCTDASQVLKELQEAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPPG 177          
BLAST of EY685308 vs. ExPASy Swiss-Prot
Match: RBS4_SOYBN (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Glycine max GN=RBCS-4 PE=3 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.396e-61
Identity = 107/138 (77.54%), Postives = 119/138 (86.23%), Query Frame = 2
Query:   35 TNNDITSIASNGGIVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 448
            TNNDITSIASNGG VQCM+VWPP G KKFETLSYLP L D  L KE+ YL+R GWIPCLEFELE G+VYREH++S GYYDGRYWTMWKLPM+GCTDA+QVLKE+ E +  YP+ F+RIIGFDN RQVQCISFIA KPP
Sbjct:   39 TNNDITSIASNGGRVQCMQVWPPVGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSLGYYDGRYWTMWKLPMFGCTDASQVLKELQEAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPP 176          
BLAST of EY685308 vs. ExPASy Swiss-Prot
Match: RBS_MEDSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.823e-61
Identity = 105/137 (76.64%), Postives = 121/137 (88.32%), Query Frame = 2
Query:   35 TNNDITSIASNGGIVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 445
            TNNDITSIASNGG V CM+VWPP G KKFETLSYLPPL++E L KE+ YLIR GWIPCLEFELEKG+VYRE+H+SPGYYDGRYWTMW+LP++G TD++QVLKE+ + + EYP SF+RIIGFDN RQVQCISFIA  P
Sbjct:   41 TNNDITSIASNGGRVNCMQVWPPVGKKKFETLSYLPPLTEEQLAKEVEYLIRKGWIPCLEFELEKGFVYRENHRSPGYYDGRYWTMWRLPLFGATDSSQVLKELADCKAEYPDSFIRIIGFDNVRQVQCISFIAHTP 177          
BLAST of EY685308 vs. ExPASy Swiss-Prot
Match: RBS3_AMAHP (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS3 PE=2 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.823e-61
Identity = 105/138 (76.09%), Postives = 119/138 (86.23%), Query Frame = 2
Query:   38 NNDITSIASNGGIVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 451
            +NDITSIASNGG VQCM+VWPP G KKFETLSYLPPLSD  LL ++ YL+ +GWIPC+EFELE  +VYRE+H+SPGY DGRYWTMWKLPMYGCTD  QVL EV E +K YP +F+RIIGFDNKRQVQC+SFIA KPPG
Sbjct:   42 SNDITSIASNGGRVQCMQVWPPVGKKKFETLSYLPPLSDAQLLAQVQYLLNNGWIPCIEFELEHPFVYRENHRSPGYQDGRYWTMWKLPMYGCTDPAQVLNEVEEAKKAYPSAFIRIIGFDNKRQVQCVSFIAFKPPG 179          
BLAST of EY685308 vs. ExPASy Swiss-Prot
Match: RBS_GLYTO (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Glycine tomentella GN=RBCS PE=3 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 2.381e-61
Identity = 106/138 (76.81%), Postives = 119/138 (86.23%), Query Frame = 2
Query:   35 TNNDITSIASNGGIVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 448
            TNNDI SIASNGG VQCM+VWP TG KKFETLSYLP L D  L KE+ YL+R GWIPCLEFELE G+VYRE+H+SPGYYDGRYWTMWKLP++GCTDA+QVLKE+ E +  YP+ F+RIIGFDN RQVQCISFIA KPP
Sbjct:   39 TNNDIASIASNGGRVQCMQVWPTTGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYRENHRSPGYYDGRYWTMWKLPVFGCTDASQVLKELQEAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPP 176          
The following BLAST results are available for this feature:
BLAST of EY685308 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 128
Match NameE-valueIdentityDescription
RBS_LACSA6.469e-6781.29Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_PYRPY6.694e-6474.32Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MALSP1.948e-6378.26Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_BETVE5.667e-6378.57Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_GLYTA9.667e-6378.26Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_SOYBN1.649e-6277.70Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS4_SOYBN1.396e-6177.54Ribulose bisphosphate carboxylase small chain 4, c... [more]
RBS_MEDSA1.823e-6176.64Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3_AMAHP1.823e-6176.09Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS_GLYTO2.381e-6176.81Ribulose bisphosphate carboxylase small chain, chl... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-013-C12-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685308 ID=EY685308; Name=EY685308; organism=Citrus sinensis; type=EST; length=706bp
CCACGCGTCCGCGGACGCGTGGGGCAACCCCCATACCAACAATGACATTA
CTTCCATTGCAAGCAACGGCGGAATAGTCCAATGCATGAAGGTGTGGCCA
CCAACTGGCTTGAAGAAGTTCGAGACTCTCTCATACCTCCCGCCACTGTC
CGATGAAGCTTTGCTCAAGGAAATCAATTACCTTATCCGCTCCGGCTGGA
TTCCCTGCTTGGAATTCGAGTTGGAGAAAGGATGGGTGTACCGTGAGCAC
CACAAGTCACCAGGATACTACGATGGACGCTACTGGACAATGTGGAAGCT
GCCCATGTATGGGTGCACAGATGCAACCCAGGTTTTGAAGGAGGTTGGGG
AGGTCCAGAAGGAATACCCACATTCATTCGTCCGAATTATCGGATTTGAC
AACAAGCGTCAAGTGCAGTGCATCAGTTTCATTGCTGCCAAGCCACCAGG
CGTCTAGGTTCCCAATTAAATTTGTGTAACCACCCATGCAATATTGTTGA
TTATTATTATGTGTAACCCCCATAATGATCATTCGATCAATGGGGGTTCG
GTTTGCGTTTAATTTGTACTTAGGCTGCTGTTGCTGCTGCTCAAACTTTT
TTGGTTTTCTCCCCGACTTTGGCTTCTTTTTTTTTTTTTTATATATATTT
TAATAATTGAATCCCTTTGTTTTCAGTTTTCTTAAAAAAAAAAAAAAAAA
AAAAAA
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