EY685266

Overview
NameEY685266
Unique NameEY685266
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length900
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9875 contig Csv1_Contig9875:1482..2381. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY685266 vs. ExPASy Swiss-Prot
Match: DRTS2_ARATH (Bifunctional dihydrofolate reductase-thymidylate synthase 2 OS=Arabidopsis thaliana GN=THY-2 PE=2 SV=2)

HSP 1 Score: 275.018 bits (702), Expect = 4.016e-73
Identity = 124/142 (87.32%), Postives = 139/142 (97.89%), Query Frame = 3
Query:   18 PNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 443
            P+DRRI++SAWNPSDLKLMALPPCHMFAQFY+ANGELSCQMYQRSADMGLGVPFNIASY+LLTC++AHVCDL PGDFIHVIGDAHVY+NHVRPL+EQL+  PKPFP+LKINPEKKDIDSFVA+DF+LIGYDPH+KI+MKMAV
Sbjct:  424 PDDRRIIMSAWNPSDLKLMALPPCHMFAQFYVANGELSCQMYQRSADMGLGVPFNIASYSLLTCILAHVCDLVPGDFIHVIGDAHVYKNHVRPLQEQLENPPKPFPVLKINPEKKDIDSFVADDFELIGYDPHKKIDMKMAV 565          
BLAST of EY685266 vs. ExPASy Swiss-Prot
Match: DRTS_SOYBN (Bifunctional dihydrofolate reductase-thymidylate synthase OS=Glycine max PE=1 SV=1)

HSP 1 Score: 271.166 bits (692), Expect = 5.800e-72
Identity = 124/142 (87.32%), Postives = 135/142 (95.07%), Query Frame = 3
Query:   18 PNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 443
            P+DRRI+LSAWNP DLKLMALPPCHMFAQFY+A+GELSCQMYQRSADMGLG+PFNIASYALLTCMIAHVCDL PGDFIHVIGDAH+YRNHVRPL+EQL   PKPFP LKINP+KKDIDSFVA DFKLIGYDPHQKI+MK++V
Sbjct:  389 PDDRRIILSAWNPVDLKLMALPPCHMFAQFYVAHGELSCQMYQRSADMGLGIPFNIASYALLTCMIAHVCDLIPGDFIHVIGDAHIYRNHVRPLQEQLHNQPKPFPTLKINPKKKDIDSFVAADFKLIGYDPHQKIDMKLSV 530          
BLAST of EY685266 vs. ExPASy Swiss-Prot
Match: DRTS_MAIZE (Bifunctional dihydrofolate reductase-thymidylate synthase OS=Zea mays GN=DRTS PE=2 SV=1)

HSP 1 Score: 270.011 bits (689), Expect = 1.292e-71
Identity = 125/142 (88.03%), Postives = 134/142 (94.37%), Query Frame = 3
Query:   18 PNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 443
            P DRRI+LSAWNPSDLK MALPPCHMFAQFY+ NGELSCQMYQRSADMGLGVPFNIASY+LLT MIA VCDL+PGDF+HVIGDAHVYRNHVR LEEQ+QK+PKPFPILKINP KKDIDSF+A DFKL+GYDPHQKIEMKMAV
Sbjct:  380 PEDRRIILSAWNPSDLKKMALPPCHMFAQFYVENGELSCQMYQRSADMGLGVPFNIASYSLLTYMIAQVCDLSPGDFVHVIGDAHVYRNHVRALEEQIQKMPKPFPILKINPSKKDIDSFMASDFKLVGYDPHQKIEMKMAV 521          
BLAST of EY685266 vs. ExPASy Swiss-Prot
Match: DRTS1_ARATH (Bifunctional dihydrofolate reductase-thymidylate synthase 1 OS=Arabidopsis thaliana GN=THY-1 PE=2 SV=2)

HSP 1 Score: 266.929 bits (681), Expect = 1.094e-70
Identity = 121/142 (85.21%), Postives = 133/142 (93.66%), Query Frame = 3
Query:   18 PNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 443
            P+DRRI++SAWNPSDLKLMALPPCHMFAQFY+A GELSCQMYQRSADMGLGVPFNIASY+LLTCM+AHVCDL PGDFIHV+GDAHVY+ HVRPL+EQL  LPKPFP++KINPEKK IDSFVA DF L GYDPH+KIEMKMAV
Sbjct:  378 PDDRRIIMSAWNPSDLKLMALPPCHMFAQFYVAEGELSCQMYQRSADMGLGVPFNIASYSLLTCMLAHVCDLVPGDFIHVLGDAHVYKTHVRPLQEQLLNLPKPFPVMKINPEKKQIDSFVASDFDLTGYDPHKKIEMKMAV 519          
BLAST of EY685266 vs. ExPASy Swiss-Prot
Match: DRTS_ORYSJ (Putative bifunctional dihydrofolate reductase-thymidylate synthase OS=Oryza sativa subsp. japonica GN=Os12g0446900 PE=3 SV=2)

HSP 1 Score: 259.996 bits (663), Expect = 1.337e-68
Identity = 120/142 (84.51%), Postives = 130/142 (91.55%), Query Frame = 3
Query:   18 PNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 443
            P+DRRI+LSAWNP+DLK MALPPCHMFAQFY+ NGELSCQMYQRSADMGLGVPFNIASY+LLTCMIA VCDL+PGDF+HVIGDAHVYR HV  LEEQ++K PKPFPILKINP KKDIDSFV  DFKL+ YDPH KIEMKMAV
Sbjct:  353 PDDRRIILSAWNPTDLKKMALPPCHMFAQFYVENGELSCQMYQRSADMGLGVPFNIASYSLLTCMIAQVCDLSPGDFVHVIGDAHVYRTHVEALEEQMRKQPKPFPILKINPVKKDIDSFVTSDFKLVRYDPHHKIEMKMAV 494          
BLAST of EY685266 vs. ExPASy Swiss-Prot
Match: DRTS_DAUCA (Bifunctional dihydrofolate reductase-thymidylate synthase OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 8.968e-65
Identity = 117/143 (81.82%), Postives = 127/143 (88.81%), Query Frame = 3
Query:   18 PNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPL-EEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 443
            P+DRRI+ SAWNPSDL+LMALPPCHMFAQFY+ANGELSCQMYQRSADMGLGVPFNIA+YALLTCMIAHVCDL PGDF+H IGDAHVY NH+  L E   + LPK FP+LKIN  +KDIDSF A DFKLIGYDPHQKIEMKMAV
Sbjct:  386 PDDRRIIQSAWNPSDLRLMALPPCHMFAQFYVANGELSCQMYQRSADMGLGVPFNIAAYALLTCMIAHVCDLVPGDFVHSIGDAHVYSNHLSDLFETSFRMLPKTFPVLKINSGEKDIDSFEAADFKLIGYDPHQKIEMKMAV 528          
BLAST of EY685266 vs. ExPASy Swiss-Prot
Match: TYSY_MOUSE (Thymidylate synthase OS=Mus musculus GN=Tyms PE=2 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 3.535e-53
Identity = 94/142 (66.20%), Postives = 114/142 (80.28%), Query Frame = 3
Query:   18 PNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 443
            P+DRRI++ AWNP DL LMALPPCH   QFY+ NGELSCQ+YQRS DMGLGVPFNIASYALLT MIAH+  L PGDF+H +GDAH+Y NH+ PL+ QLQ+ P+PFP LKI  + + ID F  EDF++ GY+PH  I+M+MAV
Sbjct:  166 PDDRRIIMCAWNPKDLPLMALPPCHALCQFYVVNGELSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLQPGDFVHTLGDAHIYLNHIEPLKIQLQREPRPFPKLKILRKVETIDDFKVEDFQIEGYNPHPTIKMEMAV 307          
BLAST of EY685266 vs. ExPASy Swiss-Prot
Match: TYSY_RAT (Thymidylate synthase OS=Rattus norvegicus GN=Tyms PE=1 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 7.875e-53
Identity = 93/142 (65.49%), Postives = 114/142 (80.28%), Query Frame = 3
Query:   18 PNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 443
            P+DRRI++ AWNP DL LMALPPCH   QFY+ NGELSCQ+YQRS DMGLGVPFNIASYALLT MIAH+  L PGDF+H +GDAH+Y NH+ PL+ QLQ+ P+PFP L+I  + + ID F  EDF++ GY+PH  I+M+MAV
Sbjct:  166 PDDRRIIMCAWNPKDLPLMALPPCHALCQFYVVNGELSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLQPGDFVHTLGDAHIYLNHIEPLKIQLQREPRPFPKLRILRKVETIDDFKVEDFQIEGYNPHPTIKMEMAV 307          
BLAST of EY685266 vs. ExPASy Swiss-Prot
Match: TYSY_HUMAN (Thymidylate synthase OS=Homo sapiens GN=TYMS PE=1 SV=3)

HSP 1 Score: 206.838 bits (525), Expect = 1.343e-52
Identity = 94/142 (66.20%), Postives = 114/142 (80.28%), Query Frame = 3
Query:   18 PNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 443
            P+DRRI++ AWNP DL LMALPPCH   QFY+ N ELSCQ+YQRS DMGLGVPFNIASYALLT MIAH+  L PGDFIH +GDAH+Y NH+ PL+ QLQ+ P+PFP L+I  + + ID F AEDF++ GY+PH  I+M+MAV
Sbjct:  172 PDDRRIIMCAWNPRDLPLMALPPCHALCQFYVVNSELSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKIQLQREPRPFPKLRILRKVEKIDDFKAEDFQIEGYNPHPTIKMEMAV 313          
BLAST of EY685266 vs. ExPASy Swiss-Prot
Match: TYSY_EHV2 (Thymidylate synthase OS=Equine herpesvirus 2 (strain 86/87) GN=70 PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 3.908e-52
Identity = 96/142 (67.61%), Postives = 112/142 (78.87%), Query Frame = 3
Query:   18 PNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 443
            P  RR+VL+AWNP+DL  MALPPCH+  QFY+A GELSCQ+YQRS DMGLGVPFNIASY+LLT M+AH+  L PGDFIHV+GDAHVY NHV PL+ QL + P+PFP L+I    +DID F AEDF L GY PH  I M+MAV
Sbjct:  148 PESRRLVLTAWNPADLPAMALPPCHLLCQFYVAGGELSCQLYQRSGDMGLGVPFNIASYSLLTYMVAHLTGLEPGDFIHVLGDAHVYLNHVEPLKLQLTRSPRPFPRLRILRRVEDIDDFRAEDFALEGYHPHAAIPMEMAV 289          
The following BLAST results are available for this feature:
BLAST of EY685266 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 405
Match NameE-valueIdentityDescription
DRTS2_ARATH4.016e-7387.32Bifunctional dihydrofolate reductase-thymidylate s... [more]
DRTS_SOYBN5.800e-7287.32Bifunctional dihydrofolate reductase-thymidylate s... [more]
DRTS_MAIZE1.292e-7188.03Bifunctional dihydrofolate reductase-thymidylate s... [more]
DRTS1_ARATH1.094e-7085.21Bifunctional dihydrofolate reductase-thymidylate s... [more]
DRTS_ORYSJ1.337e-6884.51Putative bifunctional dihydrofolate reductase-thym... [more]
DRTS_DAUCA8.968e-6581.82Bifunctional dihydrofolate reductase-thymidylate s... [more]
TYSY_MOUSE3.535e-5366.20Thymidylate synthase OS=Mus musculus GN=Tyms PE=2 ... [more]
TYSY_RAT7.875e-5365.49Thymidylate synthase OS=Rattus norvegicus GN=Tyms ... [more]
TYSY_HUMAN1.343e-5266.20Thymidylate synthase OS=Homo sapiens GN=TYMS PE=1 ... [more]
TYSY_EHV23.908e-5267.61Thymidylate synthase OS=Equine herpesvirus 2 (stra... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C2-003-011-G11-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685266 ID=EY685266; Name=EY685266; organism=Citrus sinensis; type=EST; length=900bp
CCACGCGTCCGGAATATCCAAATGATCGGCGGATTGTACTCTCGGCTTGG
AATCCTTCTGATCTCAAATTGATGGCGCTTCCACCTTGCCACATGTTTGC
TCAGTTCTATATGGCTAATGGGGAGTTATCATGTCAAATGTATCAGCGCT
CTGCTGATATGGGCCTGGGTGTGCCGTTTAACATTGCTTCATATGCCCTC
TTGACATGCATGATTGCTCATGTTTGTGATCTTGCTCCTGGCGATTTCAT
TCATGTCATTGGTGATGCTCATGTTTATCGCAATCATGTCAGGCCCCTGG
AGGAACAACTTCAGAAACTGCCAAAGCCTTTTCCAATTTTGAAGATCAAT
CCTGAGAAGAAAGATATAGATTCTTTTGTAGCAGAGGATTTCAAACTTAT
AGGTTATGATCCACACCAGAAAATAGAAATGAAAATGGCGGTATAGATCT
CTCTTATAGGTTCAGTAACTCACAGACTCTGGTCCCTCCTAGGCAATAAT
TGCCAAGTTTTGAGGCACCGCTACTGGAGGCATGTATTGACGCAGAGTTT
TATACAAATAGCCAATAAGAATCTGATTGTTGGATAAACTTTTAAATAGT
GCCTATGTAGTAAGCGGGAATCCTTTAGTCCACAAGAGTCGGTGGTTCTA
AGGTGATTTAGGATGTTTGTATTTTCTTGCTTTTCACCTTTCCTTTTCCC
TTGTTTACTGAAAACTATCAAAGTATGTACTTCTGCTCAAAGTCTCAAAT
GCTCTTTTTGAAAAAGATTTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAGGGGGGCCGCCCTAAAGGAACCAAGTTTCCTACCCCGT
GGCTTGGGAACCAAAAATTCTTTCAAAAAGGGGCCCTAAATTTCAATTCC
back to top