EY685218

Overview
NameEY685218
Unique NameEY685218
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length938
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY685218_ssr735 microsatellite EY685218_ssr735:735..744. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY685218 vs. ExPASy Swiss-Prot
Match: UPL1_ARATH (E3 ubiquitin-protein ligase UPL1 OS=Arabidopsis thaliana GN=UPL1 PE=1 SV=3)

HSP 1 Score: 335.495 bits (859), Expect = 2.657e-91
Identity = 166/225 (73.78%), Postives = 186/225 (82.67%), Query Frame = 3
Query:   12 QNLKWMLENDISDVLDLTFSIDADEEKLILYERAQVTDYELIPGGRNIKVTEENKHQDVDLVAEHRLTTAIRPQINAFLEGFTELIPGELISIFNDKELELLISGLPDIDLDDMRANTEYSGYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDLPGISF*AASKXXXXXXAIHEGMKGFG 686
            +NLKW+LEND+SD+LDLTFS+DADEEK ILYE+ +VTDYEL PGGRNI+VTEE KH+ VDLVA H LT AIRPQINAFLEGF ELIP EL+SIFNDKELELLISGLP+ID DD++ANTEY+ Y+A SPVI WFWEVV+ FSKED AR LQFVTGTSKVPLEGF ALQGISG Q+ QIHKAYG+ + LPSAHTCFNQLDLP               AIHE  +GFG
Sbjct: 3456 KNLKWLLENDVSDILDLTFSMDADEEKHILYEKTEVTDYELKPGGRNIRVTEETKHEYVDLVAGHILTNAIRPQINAFLEGFNELIPRELVSIFNDKELELLISGLPEIDFDDLKANTEYTSYTAGSPVIHWFWEVVKAFSKEDMARFLQFVTGTSKVPLEGFKALQGISGPQRLQIHKAYGAPERLPSAHTCFNQLDLPEYQS-KEQLQERLLLAIHEASEGFG 3679          
BLAST of EY685218 vs. ExPASy Swiss-Prot
Match: UPL2_ARATH (E3 ubiquitin-protein ligase UPL2 OS=Arabidopsis thaliana GN=UPL2 PE=1 SV=2)

HSP 1 Score: 334.724 bits (857), Expect = 4.532e-91
Identity = 165/225 (73.33%), Postives = 187/225 (83.11%), Query Frame = 3
Query:   12 QNLKWMLENDISDVLDLTFSIDADEEKLILYERAQVTDYELIPGGRNIKVTEENKHQDVDLVAEHRLTTAIRPQINAFLEGFTELIPGELISIFNDKELELLISGLPDIDLDDMRANTEYSGYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDLPGISF*AASKXXXXXXAIHEGMKGFG 686
            +NLKW+LEND+SD+LDLTFS+DADEEK ILYE+ +VTDYEL PGGRNI+VTEE KH+ VDLVA+H LT+AIRPQINAFLEG  ELIP EL+SIFNDKELELLISGLP+ID DD++ANTEY+ Y+  SPVI+WFWEVV+ FSKED AR LQFVTGTSKVPLEGF ALQGISG Q+ QIHKAYGS + LPSAHTCFNQLDLP               AIHE  +GFG
Sbjct: 3433 KNLKWLLENDVSDILDLTFSMDADEEKHILYEKTEVTDYELKPGGRNIRVTEETKHEYVDLVADHILTSAIRPQINAFLEGLNELIPRELVSIFNDKELELLISGLPEIDFDDLKANTEYTSYTVGSPVIRWFWEVVKAFSKEDMARFLQFVTGTSKVPLEGFKALQGISGPQRLQIHKAYGSPERLPSAHTCFNQLDLPEYQS-KEQVQERLLLAIHEANEGFG 3656          
BLAST of EY685218 vs. ExPASy Swiss-Prot
Match: TOM1_NEUCR (E3 ubiquitin-protein ligase TOM1-like OS=Neurospora crassa GN=B11B22.010 PE=3 SV=3)

HSP 1 Score: 249.98 bits (637), Expect = 1.468e-65
Identity = 121/200 (60.50%), Postives = 154/200 (77.00%), Query Frame = 3
Query:   12 QNLKWMLENDISDVLDLTFSIDADEEKLILYERAQVTDYELIPGGRNIKVTEENKHQDVDLVAEHRLTTAIRPQINAFLEGFTELIPGELISIFNDKELELLISGLPDIDLDDMRANTEYSGYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDLP 611
            ++L WMLENDI+D++  TFS++ D     ++   +V D  LI  GRNI VTEENKH+ V L+ EH+L T+++ Q+ AFL GF E+IP ELI+IFN++ELELLISGLPDID+DD +ANTEY  YSA +P IQWFW  V+ F KE+ A+LLQFVTGTSKVPL GF  L+G++G  +F IH+ YGS D LPS+HTCFNQLDLP
Sbjct: 3808 KSLVWMLENDITDIITETFSVEDD-----VFGEVKVVD--LIENGRNIPVTEENKHEYVRLIVEHKLITSVKDQMKAFLTGFHEIIPEELIAIFNEQELELLISGLPDIDIDDWKANTEYHNYSAGAPQIQWFWRAVRSFDKEELAKLLQFVTGTSKVPLNGFKELEGMNGVSRFNIHRDYGSKDRLPSSHTCFNQLDLP 4000          
BLAST of EY685218 vs. ExPASy Swiss-Prot
Match: PTR1_SCHPO (E3 ubiquitin-protein ligase ptr1 OS=Schizosaccharomyces pombe GN=ptr1 PE=1 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 3.168e-60
Identity = 112/225 (49.78%), Postives = 159/225 (70.67%), Query Frame = 3
Query:   12 QNLKWMLENDISDVLDLTFSIDADEEKLILYERAQVTDYELIPGGRNIKVTEENKHQDVDLVAEHRLTTAIRPQINAFLEGFTELIPGELISIFNDKELELLISGLPDIDLDDMRANTEYSGYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDLPGISF*AASKXXXXXXAIHEGMKGFG 686
            ++L WML NDI+D++   F+++ D    +  E+  V   +LIP GRNI VTE NK   V+ + +++L  +++ Q+ + L+GF+++IP  LI IFN++ELELLISGLP+ID+DD + NTEY GY+ +SP +QWFW  V+ F +E++A+LLQF TGTSKVPL GF  L+G+SG Q+F IHK+YGS++ LP +HTCFNQLDLP               AI+EG +GFG
Sbjct: 3009 KSLVWMLNNDITDIITEEFAVEKD----VFGEKTVV---DLIPNGRNIPVTELNKQNYVNRMVDYKLRESVKDQLKSLLDGFSDIIPSHLIQIFNEQELELLISGLPEIDIDDWKNNTEYHGYNVSSPQVQWFWRAVRSFDEEERAKLLQFATGTSKVPLNGFKELEGMSGFQRFNIHKSYGSLNRLPQSHTCFNQLDLPEYDT-YEQLRSMLLTAINEGSEGFG 3225          
BLAST of EY685218 vs. ExPASy Swiss-Prot
Match: TOM1_ASHGO (Probable E3 ubiquitin-protein ligase TOM1 OS=Ashbya gossypii GN=TOM1 PE=3 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 1.331e-58
Identity = 114/226 (50.44%), Postives = 157/226 (69.47%), Query Frame = 3
Query:   12 QNLKWMLENDISDVLDLTFSIDADEEKLILYERAQVTDYELIPGGRNIKVTEENKHQDVDLVAEHRLTTAIRPQINAFLEGFTELIPGELISIFNDKELELLISGLPDIDLDDMRANTEYSGYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDLPGISF*AASKXXXXXXAIHEGMKGFGI 689
            ++L W+LENDI+D+++ TFS++ D+     Y   +V   ELI  G ++ VTE+NKH  V  + E++L T+++ Q+  FL+GF  +IP +LISIF+++ELELL+SGLPDID+DD + NT Y  Y+     I +FW  V+ F KE++A+LLQFVTGTSKVPL GF  L G++G  KF IH+ YGSID LPS+HTCFNQLDLP       +       AI+EG +GFGI
Sbjct: 3040 KSLIWILENDITDIIEETFSVETDD-----YGEHKVI--ELIENGAHVAVTEQNKHDYVKKIVEYKLQTSVKDQMENFLQGFYAIIPKDLISIFDEQELELLVSGLPDIDVDDWKNNTIYVNYTPTCKQINYFWRAVRSFDKEERAKLLQFVTGTSKVPLNGFKELSGVNGISKFSIHRDYGSIDRLPSSHTCFNQLDLPAYDS-YETLRGSLLLAINEGHEGFGI 3257          
BLAST of EY685218 vs. ExPASy Swiss-Prot
Match: HUWE1_RAT (E3 ubiquitin-protein ligase HUWE1 (Fragment) OS=Rattus norvegicus GN=Huwe1 PE=1 SV=2)

HSP 1 Score: 224.172 bits (570), Expect = 8.627e-58
Identity = 125/228 (54.82%), Postives = 157/228 (68.86%), Query Frame = 3
Query:   12 QNLKWMLENDISDV-LDLTFSIDADEEKLILYERAQVTDYELIPGGRNIKVTEENKHQDVDLVAEHRLTTAIRPQINAFLEGFTELIPGELISIFNDKELELLISGLPDIDLDDMRANTEYSGYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDLPGI-SF*AASKXXXXXXAIHEGMKGFGI 689
            Q L ++LEND+S +  DLTFS +  E     +   +V D  L P G NI VTEENK + V LV + R+T AIR Q+ AFLEGF E+IP  LISIF ++ELELLISGLP ID+DD+++NTEY  Y + S  IQWFW  ++ F + D+A+ LQFVTGTSKVPL+GF+AL+G++G QKFQIH+   S D LPSAHTCFNQLDLP   SF           AI E  +GFG+
Sbjct:  103 QGLVYLLENDVSTLGYDLTFSTEVQE-----FGVCEVRD--LKPNGANILVTEENKKEYVHLVCQMRMTGAIRKQLAAFLEGFYEIIPKRLISIFTEQELELLISGLPTIDIDDLKSNTEYHKYQSNSIQIQWFWRALRSFDQADRAKFLQFVTGTSKVPLQGFAALEGMNGIQKFQIHRDDRSTDRLPSAHTCFNQLDLPAYESF--EKLRHMLLLAIQECSEGFGL 321          
BLAST of EY685218 vs. ExPASy Swiss-Prot
Match: HUWE1_MOUSE (E3 ubiquitin-protein ligase HUWE1 OS=Mus musculus GN=Huwe1 PE=1 SV=4)

HSP 1 Score: 224.172 bits (570), Expect = 8.627e-58
Identity = 125/228 (54.82%), Postives = 157/228 (68.86%), Query Frame = 3
Query:   12 QNLKWMLENDISDV-LDLTFSIDADEEKLILYERAQVTDYELIPGGRNIKVTEENKHQDVDLVAEHRLTTAIRPQINAFLEGFTELIPGELISIFNDKELELLISGLPDIDLDDMRANTEYSGYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDLPGI-SF*AASKXXXXXXAIHEGMKGFGI 689
            Q L ++LEND+S +  DLTFS +  E     +   +V D  L P G NI VTEENK + V LV + R+T AIR Q+ AFLEGF E+IP  LISIF ++ELELLISGLP ID+DD+++NTEY  Y + S  IQWFW  ++ F + D+A+ LQFVTGTSKVPL+GF+AL+G++G QKFQIH+   S D LPSAHTCFNQLDLP   SF           AI E  +GFG+
Sbjct: 4158 QGLVYLLENDVSTLGYDLTFSTEVQE-----FGVCEVRD--LKPNGANILVTEENKKEYVHLVCQMRMTGAIRKQLAAFLEGFYEIIPKRLISIFTEQELELLISGLPTIDIDDLKSNTEYHKYQSNSIQIQWFWRALRSFDQADRAKFLQFVTGTSKVPLQGFAALEGMNGIQKFQIHRDDRSTDRLPSAHTCFNQLDLPAYESF--EKLRHMLLLAIQECSEGFGL 4376          
BLAST of EY685218 vs. ExPASy Swiss-Prot
Match: HUWE1_HUMAN (E3 ubiquitin-protein ligase HUWE1 OS=Homo sapiens GN=HUWE1 PE=1 SV=3)

HSP 1 Score: 224.172 bits (570), Expect = 8.627e-58
Identity = 125/228 (54.82%), Postives = 157/228 (68.86%), Query Frame = 3
Query:   12 QNLKWMLENDISDV-LDLTFSIDADEEKLILYERAQVTDYELIPGGRNIKVTEENKHQDVDLVAEHRLTTAIRPQINAFLEGFTELIPGELISIFNDKELELLISGLPDIDLDDMRANTEYSGYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDLPGI-SF*AASKXXXXXXAIHEGMKGFGI 689
            Q L ++LEND+S +  DLTFS +  E     +   +V D  L P G NI VTEENK + V LV + R+T AIR Q+ AFLEGF E+IP  LISIF ++ELELLISGLP ID+DD+++NTEY  Y + S  IQWFW  ++ F + D+A+ LQFVTGTSKVPL+GF+AL+G++G QKFQIH+   S D LPSAHTCFNQLDLP   SF           AI E  +GFG+
Sbjct: 4155 QGLVYLLENDVSTLGYDLTFSTEVQE-----FGVCEVRD--LKPNGANILVTEENKKEYVHLVCQMRMTGAIRKQLAAFLEGFYEIIPKRLISIFTEQELELLISGLPTIDIDDLKSNTEYHKYQSNSIQIQWFWRALRSFDQADRAKFLQFVTGTSKVPLQGFAALEGMNGIQKFQIHRDDRSTDRLPSAHTCFNQLDLPAYESF--EKLRHMLLLAIQECSEGFGL 4373          
BLAST of EY685218 vs. ExPASy Swiss-Prot
Match: PUB3_SCHPO (E3 ubiquitin-protein ligase pub3 OS=Schizosaccharomyces pombe GN=pub3 PE=2 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 1.377e-55
Identity = 103/200 (51.50%), Postives = 144/200 (72.00%), Query Frame = 3
Query:   12 QNLKWMLENDISDVLDLTFSIDADEEKLILYERAQVTDYELIPGGRNIKVTEENKHQDVDLVAEHRLTTAIRPQINAFLEGFTELIPGELISIFNDKELELLISGLPDIDLDDMRANTEYSGYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDLP 611
            ++LKW+LENDI+ +LDLTFS++ D          +V   ELI  G NI+VTEENK + VDLV E R++  +  Q NAF  GF EL+  +L+++F+++ELELLI G+ D+D++D +++TEY  Y A  PVI+WFWE++ G+  ED+++LLQF TGTS++P+ GF  LQG  G +KF I KA G+ D LP AHTCFN+LDLP
Sbjct:  570 RSLKWVLENDITGILDLTFSVEEDHF-------GEVRTVELITNGENIEVTEENKKKYVDLVTEWRVSKRVEQQFNAFYSGFVELVSPDLVNVFDERELELLIGGISDVDVEDWKSHTEYRTYIATDPVIKWFWEIIAGWKNEDRSKLLQFATGTSRIPVNGFRDLQGSDGPRKFTIEKA-GTPDQLPVAHTCFNRLDLP 761          
BLAST of EY685218 vs. ExPASy Swiss-Prot
Match: TOM1_YEAST (E3 ubiquitin-protein ligase TOM1 OS=Saccharomyces cerevisiae GN=TOM1 PE=1 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 9.870e-54
Identity = 109/226 (48.23%), Postives = 155/226 (68.58%), Query Frame = 3
Query:   12 QNLKWMLENDISDVLDLTFSIDADEEKLILYERAQVTDYELIPGGRNIKVTEENKHQDVDLVAEHRLTTAIRPQINAFLEGFTELIPGELISIFNDKELELLISGLPDIDLDDMRANTEYSGYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDLPGISF*AASKXXXXXXAIHEGMKGFGI 689
            ++L W+LENDI+D+++ TFS++ D+     Y   +V +  LI GG++I VTE NK   V  V E++L T+++ Q++ FL GF  LI  +LI+IF+++ELELLISGLPDID+DD + NT Y  Y+A    + +FW  V+ F  E++A+LLQFVTGTSKVPL GF  L G++G  KF IH+ +GS + LPS+HTCFNQL+LP       +       AI+EG +GFG+
Sbjct: 3050 KSLVWILENDITDIIEETFSVETDD-----YGEHKVIN--LIEGGKDIIVTEANKQDYVKKVVEYKLQTSVKEQMDNFLVGFYALISKDLITIFDEQELELLISGLPDIDVDDWKNNTTYVNYTATCKEVSYFWRAVRSFDAEERAKLLQFVTGTSKVPLNGFKELSGVNGVCKFSIHRDFGSSERLPSSHTCFNQLNLPPYES-YETLRGSLLLAINEGHEGFGL 3267          
The following BLAST results are available for this feature:
BLAST of EY685218 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
UPL1_ARATH2.657e-9173.78E3 ubiquitin-protein ligase UPL1 OS=Arabidopsis th... [more]
UPL2_ARATH4.532e-9173.33E3 ubiquitin-protein ligase UPL2 OS=Arabidopsis th... [more]
TOM1_NEUCR1.468e-6560.50E3 ubiquitin-protein ligase TOM1-like OS=Neurospor... [more]
PTR1_SCHPO3.168e-6049.78E3 ubiquitin-protein ligase ptr1 OS=Schizosaccharo... [more]
TOM1_ASHGO1.331e-5850.44Probable E3 ubiquitin-protein ligase TOM1 OS=Ashby... [more]
HUWE1_RAT8.627e-5854.82E3 ubiquitin-protein ligase HUWE1 (Fragment) OS=Ra... [more]
HUWE1_MOUSE8.627e-5854.82E3 ubiquitin-protein ligase HUWE1 OS=Mus musculus ... [more]
HUWE1_HUMAN8.627e-5854.82E3 ubiquitin-protein ligase HUWE1 OS=Homo sapiens ... [more]
PUB3_SCHPO1.377e-5551.50E3 ubiquitin-protein ligase pub3 OS=Schizosaccharo... [more]
TOM1_YEAST9.870e-5448.23E3 ubiquitin-protein ligase TOM1 OS=Saccharomyces ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-011-C03-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685218 ID=EY685218; Name=EY685218; organism=Citrus sinensis; type=EST; length=938bp
CCGGATTACTTCAAAACCTGAAGTGGATGCTTGAGAATGACATCAGTGAT
GTTCTTGACCTCACTTTTAGTATTGATGCTGATGAGGAGAAGCTGATTTT
GTATGAAAGGGCGCAGGTAACCGACTATGAGCTAATTCCTGGTGGACGGA
ATATTAAAGTTACTGAGGAGAATAAGCACCAGGATGTGGATTTAGTCGCG
GAGCATCGTTTGACGACTGCTATTCGGCCTCAAATAAATGCTTTTCTGGA
GGGATTTACCGAACTAATTCCTGGGGAGTTGATATCTATCTTCAATGACA
AGGAATTAGAATTATTGATTAGTGGGCTTCCGGATATTGATTTGGATGAC
ATGAGGGCAAATACGGAATATTCTGGATATAGTGCTGCATCTCCTGTTAT
CCAGTGGTTTTGGGAGGTTGTTCAAGGGTTCAGCAAGGAGGATAAGGCTC
GTCTTCTGCAGTTTGTGACTGGCACCTCAAAGGTGCCCTTGGAAGGTTTC
AGTGCACTTCAAGGAATTTCAGGTTCACAGAAGTTTCAAATACACAAGGC
ATATGGCAGCATAGATCATTTGCCTTCTGCTCATACTTGTTTCAATCAAT
TAGATTTGCCGGGAATATCCTTCTAAGCAGCATCTAAGAGGAGAAGACTG
CTGCTTGCAATTCATGAAGGAATGAAGGGGTTTGGGATTTGGTTACATAA
ATTTGGGTATTTCTCCAGAATAGTGTAAAATAAAATATATATATTATCCC
AAAAGCTTGCATTGGGAAGAGGAAATGGGTAAAAAGGGGGGATTCCCATT
TCTAATTCAAAAATTGTTTTTTTTATTGGCAGCCATAATTTTGGGCTATT
GGAAAATTAACATGGGGAGGTTTGAAATTTTGCCACATGGGCCCCTTATT
TTTTTCGAAAATCTCCTTTTTCCCCTTTTTTGGTTTTC
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