EY685215

Overview
NameEY685215
Unique NameEY685215
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length916
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY685215_ssr221 microsatellite EY685215_ssr221:221..232. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY685215 vs. ExPASy Swiss-Prot
Match: XTH6_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 6 OS=Arabidopsis thaliana GN=XTH6 PE=2 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 3.837e-46
Identity = 66/118 (55.93%), Postives = 85/118 (72.03%), Query Frame = 2
Query:   80 SPAYPKKCNSIICVALLSCILLLRFRAT-GYFS*GCGGGWADAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDVGGPGKPNG 430
            SP++P      +C+  L  ++ +R  A    F       W+++H+RQ+E G+AIQLVLDQ++GCGFASKR+YLFGRVSMKIKL+PGDSAGTVTAFYMNS+T  VRDELD    G  +G
Sbjct:    6 SPSFPGTL--CLCIFTLLTLMFIRVSARPATFVEDFKAAWSESHIRQMEDGKAIQLVLDQSTGCGFASKRKYLFGRVSMKIKLIPGDSAGTVTAFYMNSDTATVRDELDFEFLGNRSG 121          

HSP 2 Score: 78.5666 bits (192), Expect = 3.837e-46
Identity = 34/48 (70.83%), Postives = 39/48 (81.25%), Query Frame = 3
Query:  414 LGNRTGQPYTAQTNIYANGKGDREQRVNLWFDPAGHYPLYPILLEHSH 557
            LGNR+GQPY+ QTNI+A+GKGDREQRVNLWFDP+  Y  Y IL  H H
Sbjct:  116 LGNRSGQPYSVQTNIFAHGKGDREQRVNLWFDPSMDYHTYTILWSHKH 163          
BLAST of EY685215 vs. ExPASy Swiss-Prot
Match: XTH7_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 7 OS=Arabidopsis thaliana GN=XTH7 PE=2 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 1.301e-43
Identity = 59/79 (74.68%), Postives = 69/79 (87.34%), Query Frame = 2
Query:  194 WADAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDVGGPGKPNG 430
            W+D H+ QI+GGRAIQL LD +SGCGFASK+QYLFGRVSMKIKL+PGDSAGTVTAFYMNS+T++VRDELD    G  +G
Sbjct:   42 WSDTHITQIDGGRAIQLKLDPSSGCGFASKKQYLFGRVSMKIKLIPGDSAGTVTAFYMNSDTDSVRDELDFEFLGNRSG 120          

HSP 2 Score: 72.4034 bits (176), Expect = 1.301e-43
Identity = 31/46 (67.39%), Postives = 37/46 (80.43%), Query Frame = 3
Query:  414 LGNRTGQPYTAQTNIYANGKGDREQRVNLWFDPAGHYPLYPILLEH 551
            LGNR+GQPYT QTN++A+GKGDREQRVNLWFDP+  +  Y I   H
Sbjct:  115 LGNRSGQPYTVQTNVFAHGKGDREQRVNLWFDPSRDFHEYAISWNH 160          
BLAST of EY685215 vs. ExPASy Swiss-Prot
Match: XTHA_PHAAN (Xyloglucan endotransglucosylase/hydrolase protein A OS=Phaseolus angularis GN=XTHA PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.885e-30
Identity = 44/79 (55.70%), Postives = 52/79 (65.82%), Query Frame = 2
Query:  194 WADAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDVGGPGKPNG 430
            WA  H++ + GG  IQL LD+ +G GF SK  YLFG  SM IKLVPGDSAGTVTAFY+ S+T    DE+D    G   G
Sbjct:   39 WAFDHIKYLNGGSEIQLHLDKYTGTGFQSKGSYLFGHFSMYIKLVPGDSAGTVTAFYL-SSTNAEHDEIDFEFLGNRTG 116          

HSP 2 Score: 67.3958 bits (163), Expect = 1.885e-30
Identity = 28/43 (65.12%), Postives = 32/43 (74.42%), Query Frame = 3
Query:  414 LGNRTGQPYTAQTNIYANGKGDREQRVNLWFDPAGHYPLYPIL 542
            LGNRTGQPY  QTN++  GKGDREQR+ LWFDP   Y  Y +L
Sbjct:  111 LGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTTQYHRYSVL 153          

HSP 3 Score: 23.8682 bits (50), Expect = 1.885e-30
Identity = 8/12 (66.67%), Postives = 10/12 (83.33%), Query Frame = 1
Query:  544 WNIHIIAFYVDD 579
            WN++ I FYVDD
Sbjct:  154 WNMYQIVFYVDD 165          
BLAST of EY685215 vs. ExPASy Swiss-Prot
Match: XTH_WHEAT (Probable xyloglucan endotransglucosylase/hydrolase OS=Triticum aestivum GN=XTH PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.885e-30
Identity = 40/79 (50.63%), Postives = 50/79 (63.29%), Query Frame = 2
Query:  194 WADAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDVGGPGKPNG 430
            WA  H+  + GGR +QL LD+ +G GF ++  YLFG  SM IKLV GDSAGTVTAFY++S      DE+D    G   G
Sbjct:   40 WAQDHIHYVNGGREVQLSLDKTTGTGFQTRGSYLFGHFSMHIKLVGGDSAGTVTAFYLSSQNSE-HDEIDFEFLGNRTG 117          

HSP 2 Score: 67.3958 bits (163), Expect = 1.885e-30
Identity = 28/43 (65.12%), Postives = 33/43 (76.74%), Query Frame = 3
Query:  414 LGNRTGQPYTAQTNIYANGKGDREQRVNLWFDPAGHYPLYPIL 542
            LGNRTGQPY  QTN+++ GKGDREQR+ LWFDP   Y  Y +L
Sbjct:  112 LGNRTGQPYILQTNVFSGGKGDREQRIYLWFDPTKDYHSYSVL 154          

HSP 3 Score: 25.7942 bits (55), Expect = 1.885e-30
Identity = 8/12 (66.67%), Postives = 12/12 (100.00%), Query Frame = 1
Query:  544 WNIHIIAFYVDD 579
            WN+++IAF+VDD
Sbjct:  155 WNLYMIAFFVDD 166          
BLAST of EY685215 vs. ExPASy Swiss-Prot
Match: XTH_TOBAC (Probable xyloglucan endotransglucosylase/hydrolase protein OS=Nicotiana tabacum GN=XTH PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.092e-30
Identity = 42/79 (53.16%), Postives = 53/79 (67.09%), Query Frame = 2
Query:  194 WADAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDVGGPGKPNG 430
            WA  H++ + GG  + LVLD++SG GF SK+ YLFG  SMK+KLV GDSAG VTAFY++SN     DE+D    G   G
Sbjct:   40 WASHHIKYLSGGSTVDLVLDRSSGAGFQSKKSYLFGHFSMKLKLVGGDSAGVVTAFYLSSNNAE-HDEIDFEFLGNRTG 117          

HSP 2 Score: 66.6254 bits (161), Expect = 2.092e-30
Identity = 28/43 (65.12%), Postives = 32/43 (74.42%), Query Frame = 3
Query:  414 LGNRTGQPYTAQTNIYANGKGDREQRVNLWFDPAGHYPLYPIL 542
            LGNRTGQPY  QTN++  GKGDREQR+ LWFDP   Y  Y +L
Sbjct:  112 LGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKGYHSYSVL 154          
BLAST of EY685215 vs. ExPASy Swiss-Prot
Match: XTH_SOYBN (Probable xyloglucan endotransglucosylase/hydrolase (Fragment) OS=Glycine max GN=XTH PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.625e-29
Identity = 42/79 (53.16%), Postives = 50/79 (63.29%), Query Frame = 2
Query:  194 WADAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDVGGPGKPNG 430
            WA  H++   GG  IQL LD+ +G GF SK  YLFG  SM IK+VPGDSAGTVTAFY++S      DE+D    G   G
Sbjct:   41 WAFDHIKYFNGGSDIQLHLDKYTGTGFQSKGSYLFGHFSMYIKMVPGDSAGTVTAFYLSSQNAE-HDEIDFEFLGNRTG 118          

HSP 2 Score: 67.781 bits (164), Expect = 5.625e-29
Identity = 29/43 (67.44%), Postives = 32/43 (74.42%), Query Frame = 3
Query:  414 LGNRTGQPYTAQTNIYANGKGDREQRVNLWFDPAGHYPLYPIL 542
            LGNRTGQPY  QTN++  GKGDREQR+ LWFDP   Y  Y IL
Sbjct:  113 LGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKEYHRYSIL 155          

HSP 3 Score: 21.1718 bits (43), Expect = 5.625e-29
Identity = 6/12 (50.00%), Postives = 10/12 (83.33%), Query Frame = 1
Query:  544 WNIHIIAFYVDD 579
            WN++ I F+VD+
Sbjct:  156 WNLYQIVFFVDE 167          
BLAST of EY685215 vs. ExPASy Swiss-Prot
Match: XTH1_SOLLC (Probable xyloglucan endotransglucosylase/hydrolase 1 OS=Solanum lycopersicum GN=XTH1 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.303e-29
Identity = 40/79 (50.63%), Postives = 52/79 (65.82%), Query Frame = 2
Query:  194 WADAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDVGGPGKPNG 430
            WA  H++ + GG    L+LD++SG GF SK+ YLFG  SMK++LV GDSAG VTAFY++SN     DE+D    G   G
Sbjct:   41 WASHHIKFLNGGTTTDLILDRSSGAGFQSKKSYLFGHFSMKMRLVGGDSAGVVTAFYLSSNNAE-HDEIDFEFLGNRTG 118          

HSP 2 Score: 64.6994 bits (156), Expect = 7.303e-29
Identity = 27/43 (62.79%), Postives = 32/43 (74.42%), Query Frame = 3
Query:  414 LGNRTGQPYTAQTNIYANGKGDREQRVNLWFDPAGHYPLYPIL 542
            LGNRTGQPY  QTN++  GKG+REQR+ LWFDP   Y  Y +L
Sbjct:  113 LGNRTGQPYILQTNVFTGGKGNREQRIYLWFDPTKGYHSYSVL 155          

HSP 3 Score: 21.1718 bits (43), Expect = 7.303e-29
Identity = 6/12 (50.00%), Postives = 9/12 (75.00%), Query Frame = 1
Query:  544 WNIHIIAFYVDD 579
            WN ++I  +VDD
Sbjct:  156 WNTYLIVIFVDD 167          
BLAST of EY685215 vs. ExPASy Swiss-Prot
Match: XTH5_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 5 OS=Arabidopsis thaliana GN=XTH5 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.231e-28
Identity = 40/79 (50.63%), Postives = 50/79 (63.29%), Query Frame = 2
Query:  194 WADAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDVGGPGKPNG 430
            WA  H++ + GG  + LVLD+ +G GF SK  YLFG  SM IK+V GDSAGTVTAFY++S      DE+D    G   G
Sbjct:   40 WAFDHIKYLNGGSEVHLVLDKYTGTGFQSKGSYLFGHFSMHIKMVAGDSAGTVTAFYLSSQNSE-HDEIDFEFLGNRTG 117          

HSP 2 Score: 66.2402 bits (160), Expect = 1.231e-28
Identity = 27/43 (62.79%), Postives = 33/43 (76.74%), Query Frame = 3
Query:  414 LGNRTGQPYTAQTNIYANGKGDREQRVNLWFDPAGHYPLYPIL 542
            LGNRTGQPY  QTN++  G G+REQR+NLWFDP+  Y  Y +L
Sbjct:  112 LGNRTGQPYILQTNVFTGGAGNREQRINLWFDPSKDYHSYSVL 154          

HSP 3 Score: 22.3274 bits (46), Expect = 1.231e-28
Identity = 7/12 (58.33%), Postives = 10/12 (83.33%), Query Frame = 1
Query:  544 WNIHIIAFYVDD 579
            WN++ I F+VDD
Sbjct:  155 WNMYQIVFFVDD 166          
BLAST of EY685215 vs. ExPASy Swiss-Prot
Match: XTHB_PHAAN (Probable xyloglucan endotransglucosylase/hydrolase protein B OS=Phaseolus angularis GN=XTHB PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.599e-27
Identity = 40/79 (50.63%), Postives = 49/79 (62.03%), Query Frame = 2
Query:  194 WADAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDVGGPGKPNG 430
            WA  H++   GG  IQL LD+ +G GF +K  YLFG  SM IK+VPGDSAGTVTAF ++S      DE+D    G   G
Sbjct:   40 WAFDHIKYFNGGSEIQLHLDKYTGTGFQTKGSYLFGHFSMNIKMVPGDSAGTVTAFCLSSQNAE-HDEIDFEFLGNRTG 117          

HSP 2 Score: 66.6254 bits (161), Expect = 2.599e-27
Identity = 28/43 (65.12%), Postives = 32/43 (74.42%), Query Frame = 3
Query:  414 LGNRTGQPYTAQTNIYANGKGDREQRVNLWFDPAGHYPLYPIL 542
            LGNRTGQPY  QTN++  GKGDREQR+ LWFDP   Y  Y +L
Sbjct:  112 LGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKAYHRYSVL 154          
BLAST of EY685215 vs. ExPASy Swiss-Prot
Match: XTH_BRAOB (Xyloglucan endotransglucosylase/hydrolase OS=Brassica oleracea var. botrytis GN=XET16A PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.820e-27
Identity = 41/79 (51.90%), Postives = 51/79 (64.56%), Query Frame = 2
Query:  194 WADAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDVGGPGKPNG 430
            WA  H +Q+ GG  +QL+LD+ +G GF SK  YLFG  SM IKL  GD+AG VTAFY+ S+T N  DE+D    G   G
Sbjct:   42 WAFDHQKQLNGGSELQLILDKYTGTGFQSKGSYLFGHFSMHIKLPAGDTAGVVTAFYL-SSTNNEHDEIDFEFLGNRTG 119          

HSP 2 Score: 62.3882 bits (150), Expect = 2.820e-27
Identity = 26/43 (60.47%), Postives = 32/43 (74.42%), Query Frame = 3
Query:  414 LGNRTGQPYTAQTNIYANGKGDREQRVNLWFDPAGHYPLYPIL 542
            LGNRTGQP   QTN++  GKG+REQR+ LWFDP+  Y  Y +L
Sbjct:  114 LGNRTGQPVILQTNVFTGGKGNREQRIYLWFDPSKAYHTYSVL 156          

HSP 3 Score: 20.7866 bits (42), Expect = 2.820e-27
Identity = 6/12 (50.00%), Postives = 10/12 (83.33%), Query Frame = 1
Query:  544 WNIHIIAFYVDD 579
            WN++ I F+VD+
Sbjct:  157 WNLYQIVFFVDN 168          
The following BLAST results are available for this feature:
BLAST of EY685215 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
XTH6_ARATH3.837e-4655.93Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH7_ARATH1.301e-4374.68Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTHA_PHAAN1.885e-3055.70Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH_WHEAT1.885e-3050.63Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH_TOBAC2.092e-3053.16Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH_SOYBN5.625e-2953.16Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH1_SOLLC7.303e-2950.63Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH5_ARATH1.231e-2850.63Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTHB_PHAAN2.599e-2750.63Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH_BRAOB2.820e-2751.90Xyloglucan endotransglucosylase/hydrolase OS=Brass... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C2-003-011-B12-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685215 ID=EY685215; Name=EY685215; organism=Citrus sinensis; type=EST; length=916bp
CACGCGTCCGCCACAACATATAATTAAAGCCCTTTAAAACCCCCCAACAG
ATAATATTTTATTGTACGGCCCCTTAAAGAGCCCTGCCTATCCTAAGAAA
TGCAATAGCATTATTTGTGTTGCTTTACTGTCTTGTATCCTGCTCCTGCG
TTTTAGGGCGACCGGCTACTTTTCTTGAGGATGTGGGGGGGGGTGGGCCG
ATGCCCATCTCAGGCAAATCGAGGGAGGGAGGGCCATCCAGCTAGTTCTA
GACCAAAATTCAGGATGTGGGTTTGCCTCCAAAAGGCAGTACTTGTTCGG
GCGTGTAAGCATGAAGATCAAGCTCGTTCCTGGAGACTCTGCTGGAACTG
TCACTGCATTTTATATGAATTCCAACACCGAAAATGTGAGAGACGAGCTT
GATGTGGGGGGGCCTGGGAAACCGAACGGGTCAGCCTTACACGGCCCAGA
CCAATATCTATGCAAATGGAAAAGGCGATAGAGAACAGAGAGTGAACCTC
TGGTTTGACCCTGCTGGCCATTATCCGCTTTACCCTATTCTCCTGGAACA
TTCACATAATTGCCTTCTATGTGGATGATGGGGCCCATTAGGATTTACCA
AAAACCGTGGCAAGGGCTCCCATTTCAATGAACCCACCCCAACAAGCGCG
TTTCAAGCGCTGACGCCAGGAGGATCACTAGGGCGAGCCGCGGGAGCATC
CGCGCAACTGCCCGCGAACCGCAGGCCTCTTCTACGCTTGCTTAGGCCAC
ACCGTGATACCGCGAGGGGCCCCACACGGCCCCCCGGGCCACCACGGGAC
CCGGCCGCCCCCACACGCGCCGGGCACACAGCGGCGGCGGGGCAACAGCC
CAGTCAGACGCCCACACCCACAACCCCCACAAAGGCCCACCCCCCGCACC
GCCCCCTCGCCGCCAC
back to top