EY685214

Overview
NameEY685214
Unique NameEY685214
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length451
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2111 contig Csv1_Contig2111:477..918. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY685214 vs. ExPASy Swiss-Prot
Match: UBC10_ARATH (Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis thaliana GN=UBC10 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 2.300e-22
Identity = 47/50 (94.00%), Postives = 50/50 (100.00%), Query Frame = 3
Query:   12 VSKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAMG 161
            +SKVLLSICSLLTDPNPDDPLVPEIAHMYKTD+NKYE+TARSWTQKYAMG
Sbjct:   99 ISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKNKYESTARSWTQKYAMG 148          
BLAST of EY685214 vs. ExPASy Swiss-Prot
Match: UBC4_SOLLC (Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 3.003e-22
Identity = 48/50 (96.00%), Postives = 49/50 (98.00%), Query Frame = 3
Query:   12 VSKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAMG 161
            +SKVLLSICSLLTDPNPDDPLVPEIAHMYKTDR KYETTARSWTQKYAMG
Sbjct:   99 ISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG 148          
BLAST of EY685214 vs. ExPASy Swiss-Prot
Match: UBC11_ARATH (Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis thaliana GN=UBC11 PE=2 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 3.923e-22
Identity = 47/50 (94.00%), Postives = 50/50 (100.00%), Query Frame = 3
Query:   12 VSKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAMG 161
            +SKVLLSICSLLTDPNPDDPLVPEIAHMYKTDR+KYE+TARSWTQKYAMG
Sbjct:   99 ISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYESTARSWTQKYAMG 148          
BLAST of EY685214 vs. ExPASy Swiss-Prot
Match: UBC9_ARATH (SUMO-conjugating enzyme UBC9 OS=Arabidopsis thaliana GN=UBC9 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 5.123e-22
Identity = 46/50 (92.00%), Postives = 50/50 (100.00%), Query Frame = 3
Query:   12 VSKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAMG 161
            +SKVLLSICSLLTDPNPDDPLVPEIAHMYKTD+NKYE+TAR+WTQKYAMG
Sbjct:   99 ISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKNKYESTARTWTQKYAMG 148          
BLAST of EY685214 vs. ExPASy Swiss-Prot
Match: UBC28_ARATH (Ubiquitin carrier protein E2 28 OS=Arabidopsis thaliana GN=UBC28 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 8.739e-22
Identity = 47/50 (94.00%), Postives = 49/50 (98.00%), Query Frame = 3
Query:   12 VSKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAMG 161
            +SKVLLSICSLLTDPNPDDPLVPEIAHMYKTDR KYE+TARSWTQKYAMG
Sbjct:   99 ISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYESTARSWTQKYAMG 148          
BLAST of EY685214 vs. ExPASy Swiss-Prot
Match: UBC8_ARATH (Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis thaliana GN=UBC8 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.543e-21
Identity = 46/50 (92.00%), Postives = 48/50 (96.00%), Query Frame = 3
Query:   12 VSKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAMG 161
            +SKVLLSICSLLTDPNPDDPLVPEIAHMYKTDR KYE TAR+WTQKYAMG
Sbjct:   99 ISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEATARNWTQKYAMG 148          
BLAST of EY685214 vs. ExPASy Swiss-Prot
Match: UBC30_ARATH (Ubiquitin carrier protein E2 30 OS=Arabidopsis thaliana GN=UBC30 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 7.398e-21
Identity = 46/50 (92.00%), Postives = 49/50 (98.00%), Query Frame = 3
Query:   12 VSKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAMG 161
            VSKVLLSICSLLTDPNPDDPLVPEIAH+YKTDR KYE+TA+SWTQKYAMG
Sbjct:   99 VSKVLLSICSLLTDPNPDDPLVPEIAHIYKTDRVKYESTAQSWTQKYAMG 148          
BLAST of EY685214 vs. ExPASy Swiss-Prot
Match: UBC29_ARATH (Ubiquitin carrier protein E2 29 OS=Arabidopsis thaliana GN=UBC29 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.380e-19
Identity = 42/49 (85.71%), Postives = 46/49 (93.88%), Query Frame = 3
Query:   12 VSKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAM 158
            +SKVLLSICSLLTDPNPDDPLVPEIAH+YKTD+ KYE  ARSWTQKYA+
Sbjct:   99 ISKVLLSICSLLTDPNPDDPLVPEIAHIYKTDKTKYEAMARSWTQKYAL 147          
BLAST of EY685214 vs. ExPASy Swiss-Prot
Match: UBC12_ARATH (Probable ubiquitin-conjugating enzyme E2 12 OS=Arabidopsis thaliana GN=UBC12 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 5.302e-19
Identity = 41/49 (83.67%), Postives = 47/49 (95.92%), Query Frame = 3
Query:   15 SKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAMG 161
            SKVLLSICSLLTDPNP+DPLVPEIAH+YK D++KYE+TA+ WTQKYAMG
Sbjct:  101 SKVLLSICSLLTDPNPNDPLVPEIAHLYKVDKSKYESTAQKWTQKYAMG 149          
BLAST of EY685214 vs. ExPASy Swiss-Prot
Match: UBC4_SCHPO (Ubiquitin-conjugating enzyme E2 4 OS=Schizosaccharomyces pombe GN=ubc4 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.543e-18
Identity = 40/49 (81.63%), Postives = 47/49 (95.92%), Query Frame = 3
Query:   12 VSKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAM 158
            +SKVLLSICSLLTDPNPDDPLVPEIAH+YKTDR++YE +AR WT+KYA+
Sbjct:   99 ISKVLLSICSLLTDPNPDDPLVPEIAHVYKTDRSRYELSAREWTRKYAI 147          
The following BLAST results are available for this feature:
BLAST of EY685214 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
UBC10_ARATH2.300e-2294.00Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis ... [more]
UBC4_SOLLC3.003e-2296.00Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum ... [more]
UBC11_ARATH3.923e-2294.00Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis ... [more]
UBC9_ARATH5.123e-2292.00SUMO-conjugating enzyme UBC9 OS=Arabidopsis thalia... [more]
UBC28_ARATH8.739e-2294.00Ubiquitin carrier protein E2 28 OS=Arabidopsis tha... [more]
UBC8_ARATH2.543e-2192.00Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis t... [more]
UBC30_ARATH7.398e-2192.00Ubiquitin carrier protein E2 30 OS=Arabidopsis tha... [more]
UBC29_ARATH2.380e-1985.71Ubiquitin carrier protein E2 29 OS=Arabidopsis tha... [more]
UBC12_ARATH5.302e-1983.67Probable ubiquitin-conjugating enzyme E2 12 OS=Ara... [more]
UBC4_SCHPO1.543e-1881.63Ubiquitin-conjugating enzyme E2 4 OS=Schizosacchar... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-011-B11-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685214 ID=EY685214; Name=EY685214; organism=Citrus sinensis; type=EST; length=451bp
CGGACGCGTGGGTTTCCAAGGTGTTGCTATCAATCTGTTCATTATTGACG
GATCCAAATCCCGATGATCCGTTGGTACCAGAAATTGCTCACATGTACAA
GACCGACAGGAACAAGTACGAGACAACTGCAAGGAGCTGGACCCAGAAGT
ATGCCATGGGCTAAACCTGGGTTATGGTGTGTGAGGGGGTTCCTTTTCTT
TTTAATTCTGGTTTCGAGTTAATGTATGAATATTCTGTCTGTTCAATCCT
AAAAAGTGGACCATAAGAAAGGTCCACTACATCCCCCGAATTGGAAAGGA
GAAACGGGTTGCTTCTTAATTGTTGTATGGATAATGTCACTTTGGTCAAT
CAAATGTGTTCTGATAATGTCACTTGGTCAGCCAAATTTGTACGTCCATT
CTGAATGATAAAAATCTTTCTTTCTAGTTGCTCTTGAAAAAAAAAAAAAA
A
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