EY685197

Overview
NameEY685197
Unique NameEY685197
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY685197 vs. ExPASy Swiss-Prot
Match: TIF4B_ARATH (Protein TIFY 4B OS=Arabidopsis thaliana GN=TIFY4B PE=2 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 4.227e-51
Identity = 110/195 (56.41%), Postives = 134/195 (68.72%), Query Frame = 2 
Query:  137 VDGGVTSCRSILEKPLSQLTEEDITQLTREDCRKFLKEKGMRRPSWNKSQAIQQVISLKALLESSGDSGSGVLRRVLVSPPESMPPRVNVT--SNSADLVKEPTISVSGDQNSAYRRKYPRNC---------AVDADNK---TISNRNPCEANGSIGQMTIFYCGKVNVYEGVPTDKAQEIMHLAATPIDFSQNG 679
            +D GVT+ +SILEKPL  LTEEDI+QLTREDCRKFLKEKGMRRPSWNKSQAIQQV+SLKAL E   DSG+G+LR++LVS P + PPRV  T      +L     I +  D  + +RR  PR+            D D+    ++S R+P E N  +GQMTIFY GKVNVY+GVP +KA+ IMH AA PID  +NG
Sbjct:    1 MDVGVTTAKSILEKPLKLLTEEDISQLTREDCRKFLKEKGMRRPSWNKSQAIQQVLSLKALYEPGDDSGAGILRKILVSQPPN-PPRVTTTLIEPRNELEACGRIPLQEDDGACHRRDSPRSAEFSGSSGQFVADKDSHKTVSVSPRSPAETNAVVGQMTIFYSGKVNVYDGVPPEKARSIMHFAANPIDLPENG 194
[Close]
BLAST of EY685197 vs. ExPASy Swiss-Prot
Match: TIF4A_ARATH (Protein TIFY 4A OS=Arabidopsis thaliana GN=TIFY4A PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 8.813e-49
Identity = 105/194 (54.12%), Postives = 129/194 (66.49%), Query Frame = 2 
Query:  137 VDGGVTSCRSILEKPLSQLTEEDITQLTREDCRKFLKEKGMRRPSWNKSQAIQQVISLKALLESSGDSGSGVLRRVLVSPPESMPPRVNVT--SNSADLVKEPTISVSGDQNSAYRRKYPRNCAV-----------DADNKTISNRNPCEANGSIGQMTIFYCGKVNVYEGVPTDKAQEIMHLAATPIDFSQNG 679
            +D GV+  +SIL KPL  LTEEDI+QLTREDCRKFLK+KGMRRPSWNKSQAIQQV+SLKAL E   DSG+G+ R++LVS P + PPRV  T    S +L     +S   D  + +R   PR+              D    TIS R+P E +  +GQMTIFY GKVNVY+G+P +KA+ IMH AA PID  +NG
Sbjct:    1 MDVGVSPAKSILAKPLKLLTEEDISQLTREDCRKFLKDKGMRRPSWNKSQAIQQVLSLKALYEPGDDSGAGIFRKILVSQPVN-PPRVTTTLIEPSNELEACGRVSYPEDNGACHRMDSPRSAEFSGGSGHFVSEKDGHKTTISPRSPAETSELVGQMTIFYSGKVNVYDGIPPEKARSIMHFAANPIDLPENG 193
The following BLAST results are available for this feature:
BLAST of EY685197 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
TIF4B_ARATH4.227e-5156.41Protein TIFY 4B OS=Arabidopsis thaliana GN=TIFY4B ... [more]
TIF4A_ARATH8.813e-4954.12Protein TIFY 4A OS=Arabidopsis thaliana GN=TIFY4A ... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C2-003-011-A02-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685197 ID=EY685197; Name=EY685197; organism=Citrus sinensis; type=EST; length=887bp
CACACGCTCACTCACTCTTCTCTGCTTCGCTTTCACCCCTTTAAACTTCA
GTAATTGCCACCAAAACTGTCCAAATCACTGCCGCTGAGTGGCGTGCGTG
AGTTAACGGAGAAAATCTGGACGGAATCTGATGGACGTGGACGGTGGCGT
GACGTCGTGCCGGTCAATACTCGAGAAACCTCTCAGTCAGCTCACTGAAG
AGGACATTACGCAGCTCACACGCGAAGATTGCCGCAAATTTCTCAAGGAG
AAAGGAATGCGCAGGCCATCGTGGAACAAATCGCAGGCGATCCAGCAGGT
GATCTCTCTCAAAGCTTTGCTCGAGTCCAGCGGCGATTCCGGCTCAGGTG
TTTTACGCAGAGTACTCGTCTCGCCTCCGGAAAGTATGCCGCCGCGCGTG
AATGTGACTTCAAATTCAGCTGATTTAGTAAAGGAACCGACCATCTCAGT
TTCTGGAGACCAAAACAGTGCGTATAGGCGGAAGTACCCTCGCAACTGTG
CTGTTGATGCAGATAACAAGACCATCTCTAACAGAAATCCCTGTGAAGCA
AATGGGTCCATAGGGCAGATGACGATTTTCTATTGTGGCAAGGTGAACGT
GTACGAAGGAGTGCCAACTGATAAGGCACAGGAGATTATGCACCTTGCAG
CAACTCCAATTGATTTTTCCCAGAACGGTTCCATTTGGGGGAATTACGGG
ATATAGGGCCATTCCATGCCCTTTACAAGTGACAAGCAACAGACATGTGT
CTCTCCCTCTTCCCCCTGCTGCCATGATCTCTCAGTTCCTTGCAACAGGG
AAAAATACAAATTATTCTTCGGGAGAATAGGGAAAAAGCGATTTAAAACT
CTTGGATCCGATGGGGATTGGTCAGGTTACCCCCAAA
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