EY685174

Overview
NameEY685174
Unique NameEY685174
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length927
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY685174 vs. ExPASy Swiss-Prot
Match: DCDA2_ARATH (Diaminopimelate decarboxylase 2, chloroplastic OS=Arabidopsis thaliana GN=LYSA2 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 7.437e-38
Identity = 79/127 (62.20%), Postives = 95/127 (74.80%), Query Frame = 2
Query:   74 LTQNPFPKIPISPLKTTLNFQRTLKPFTLKAVLSQNPAKSQTH--TAPVEHCFSKKADGFLYCEDVKVQDVMETVEKRPFYLYSKPQITRNVVAYKQALEGLNSIIGYAIRANNNYKILEHLRKLGC 448
            L Q    +IP   LK+TL   + LK  ++KA +SQN  K+ T    +  +HCF K +DGFLYCE  KVQD+METVEKRPFYLYSKPQITRN+ AYK+ALEG+ S+IGYAI+ANNN KILEHLR LGC
Sbjct:   23 LNQTSLSRIPFLSLKSTL---KPLKRLSVKAAVSQNSTKTLTKESASSFDHCFKKSSDGFLYCEGTKVQDIMETVEKRPFYLYSKPQITRNLEAYKEALEGVRSVIGYAIKANNNLKILEHLRSLGC 146          
BLAST of EY685174 vs. ExPASy Swiss-Prot
Match: DCDA1_ARATH (Diaminopimelate decarboxylase 1, chloroplastic OS=Arabidopsis thaliana GN=LYSA1 PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 9.091e-36
Identity = 81/144 (56.25%), Postives = 106/144 (73.61%), Query Frame = 2
Query:   32 ASQLCSNSASLSEALTQNPFPK----IPISPLKTTLNFQRTLKPFTLKA-VLSQNPAKSQTHTAPVEHCFSKKADGFLYCEDVKVQDVMETVEKRPFYLYSKPQITRNVVAYKQALEGLNSIIGYAIRANNNYKILEHLRKLGC 448
            A+Q  S  +SL+    +N   +    IP+  LK+TL   + LK  ++KA V+SQN +K+ T     +HCF K +DGFLYCE  KV+D+ME+VE+RPFYLYSKPQITRN+ AYK+ALEG++S+IGYAI+ANNN KILEHLR LGC
Sbjct:    4 ATQFLSQPSSLNPHQLKNQTSQRSRSIPVLSLKSTL---KPLKRLSVKAAVVSQNSSKTVTK---FDHCFKKSSDGFLYCEGTKVEDIMESVERRPFYLYSKPQITRNLEAYKEALEGVSSVIGYAIKANNNLKILEHLRSLGC 141          
BLAST of EY685174 vs. ExPASy Swiss-Prot
Match: DCDA_ORYSJ (Probable diaminopimelate decarboxylase, chloroplastic OS=Oryza sativa subsp. japonica GN=LYSA PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.680e-24
Identity = 62/140 (44.29%), Postives = 84/140 (60.00%), Query Frame = 2
Query:   53 SASLSEALTQNPFPKIP-ISPLKTTLNFQRTLKPFTLKAVLSQ-------NPAKSQTHTAPVEHCFSKKADGFLYCEDVKVQDVMETVEKRPFYLYSKPQITRNVVAYKQALEGLNSIIGYAIRANNNYKILEHLRKLGC 448
            S +L  AL  NP      +SP   +L  +  L   +++A LS         PA +       + CF + ADG LYCE V+V+D M   E+ PFYLYSKPQ+ RN  AY+ ALEGL SI+GYA++ANNN ++L+ LR+LGC
Sbjct:    8 SRALLPALNPNPSSHSNRVSPSAVSLRCRHGLTA-SVRASLSTAAPSPPPRPAAAAADGRAPKRCFRRGADGHLYCEGVRVEDAMGAAERTPFYLYSKPQVVRNFTAYRDALEGLRSIVGYAVKANNNLRVLQLLRELGC 146          
The following BLAST results are available for this feature:
BLAST of EY685174 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
DCDA2_ARATH7.437e-3862.20Diaminopimelate decarboxylase 2, chloroplastic OS=... [more]
DCDA1_ARATH9.091e-3656.25Diaminopimelate decarboxylase 1, chloroplastic OS=... [more]
DCDA_ORYSJ4.680e-2444.29Probable diaminopimelate decarboxylase, chloroplas... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C2-003-010-F11-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685174 ID=EY685174; Name=EY685174; organism=Citrus sinensis; type=EST; length=927bp
CTGCATCTTCCGCAAGTGGTCAGGAAAGGGCGCCAGTCAGCTTTGCTCTA
ACTCAGCCTCTCTTTCGGAAGCCCTAACCCAGAACCCATTTCCGAAAATC
CCCATTTCACCCCTCAAAACCACCTTAAACTTCCAAAGAACCCTAAAACC
CTTCACTCTCAAAGCAGTCCTCTCCCAAAACCCCGCGAAATCCCAGACAC
ACACAGCCCCAGTCGAGCACTGCTTCAGCAAGAAAGCTGACGGCTTTCTC
TACTGTGAAGATGTTAAAGTTCAGGATGTCATGGAGACAGTTGAAAAAAG
ACCTTTTTATTTGTACAGTAAGCCGCAGATCACTAGAAATGTGGTGGCTT
ATAAACAAGCCCTTGAGGGGCTGAATTCTATCATTGGTTATGCCATTAGG
GCTAATAATAACTACAAGATTTTGGAACATTTGAGAAAATTGGGTTGTGG
AGCTGCTCTTGGTAGGGGCACAGAGCTGAGGCTTGCTCTGGGAGCTGGAG
GCGGGGCGACAACAGTGAAGAGCGTGGCAAGGGCGACGGCCGGAGCGTCT
ACCCCAGGAAACGCCAAGGCGAGGCGGGGAGGACGTGGGACCGGAGCTGG
GACAGGACAAGGAGGGGAACAAAAAAGAAAGACAGCGAGCAACGGAGGGG
ACAGTGCGAAGAGAGCCGAGAGAGGGGGGTAGGGCTAGGCAGCGGAGCCC
AGGAGAAGGCGGACAACAGAGGGCGGCGGCCGCGGGCGCGGGCGCAGCCG
AGCCGCCGGGAGACGCCGAGAGGCGGGGAGACCAAGCAGACCACCCCAGA
AGGAGTTCCCCACAGACAGGGGCCCCGAGCGCATGCGCAACACCGCGGCA
AGGCAAACAGGCGAAGGCACGGCCAGCCGCAGGCGAGGGGGAAGCGCGGG
CACATAAGGGGAGAGAAGCGAGAGGAG
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