EY685166

Overview
NameEY685166
Unique NameEY685166
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length907
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY685166_ssr426 microsatellite EY685166_ssr426:426..435. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY685166 vs. ExPASy Swiss-Prot
Match: MDN1_DICDI (Midasin OS=Dictyostelium discoideum GN=mdn1 PE=3 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.927e-14
Identity = 36/103 (34.95%), Postives = 63/103 (61.17%), Query Frame = 2
Query:   98 SGQNPLQQLVLIIGDG-RFHEKENLKRWVRDLLSKKRMVAFLLVDSP--EESIVDLKELSFEGKEIKVSKYLDSFPFPYYIVLRNIEALPTTLADLLRHWFEV 397
            S   P  QLV I+ DG    + E  K+++R+   K   + F+++D+P    SI+D + +SF   +I+ + Y+  FPF YY++LR++  +P+ L+D LR WF++
Sbjct: 5793 SSGEPAMQLVFIVSDGWSLRDPETTKKYLREASIKNVFIVFIVIDNPVNNNSILDFESISFNNGKIQRTNYMSEFPFMYYVILRSLNNIPSILSDTLRQWFDL 5895          
BLAST of EY685166 vs. ExPASy Swiss-Prot
Match: MDN1_GIALA (Midasin OS=Giardia lamblia GN=MDN1 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.565e-14
Identity = 40/107 (37.38%), Postives = 65/107 (60.75%), Query Frame = 2
Query:   89 RLPSGQNPLQQLVLIIGDGRFHEKENLKRWVRDLLSKKRMVAFLLVDSPEESIVDLKELSF----EGKEIK-VSKYLDSFPFPYYIVLRNIEALPTTLADLLRHWFE 394
            R   G +   QL+L+I DGR  EK  + R +R  + + ++   +++D+ ++SI+D+K +SF     GK ++  S YLD FPF  Y +LR+IE LP TL  +++ W E
Sbjct: 4721 RFFKGSDSALQLLLMISDGRLKEKGGVAREIRKCMGRGQLPVLIVLDTDKKSIMDIKSVSFITDSSGKRVRQTSMYLDDFPFQCYALLRHIEDLPETLVAVIKRWIE 4827          
BLAST of EY685166 vs. ExPASy Swiss-Prot
Match: MDN1_HUMAN (Midasin OS=Homo sapiens GN=MDN1 PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 4.747e-13
Identity = 40/100 (40.00%), Postives = 64/100 (64.00%), Query Frame = 2
Query:  119 QLVLIIGDGR---FHEKENLKRWVRDLLSKKRMVAFLLVDSPE--ESIVDLKELSFEG--KEIKVSKYLDSFPFPYYIVLRNIEALPTTLADLLRHWFEV 397
            QL+L++ DGR      KE +   V+   +    V F+++D+P   +SI+D+K   F+G  +  ++  Y++ FPFPYYI+LR++ ALP TL+D LR WFE+
Sbjct: 5490 QLLLVVSDGRGLFLEGKERVLAAVQAARNANIFVIFVVLDNPSSRDSILDIKVPIFKGPGEMPEIRSYMEEFPFPYYIILRDVNALPETLSDALRQWFEL 5589          
BLAST of EY685166 vs. ExPASy Swiss-Prot
Match: MDN1_SCHPO (Midasin OS=Schizosaccharomyces pombe GN=mdn1 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.200e-13
Identity = 36/103 (34.95%), Postives = 66/103 (64.08%), Query Frame = 2
Query:  113 LQQLVLIIGDGRFHEKENLKRWVRDLLSKKRMVAFLLVDS----PEESIVDLKELSFEGKE-----IKVSKYLDSFPFPYYIVLRNIEALPTTLADLLRHWFE 394
            ++QL +II DG   + +++++ +R    +K M+ F+++D+     + SI+D+K++ ++ KE     +K+  Y+D F F YY+V+RNIE LP  L+  LR WF+
Sbjct: 4610 IRQLEIIISDGICEDHDSIRKLLRRAQEEKVMIVFVILDNVNTQKKSSILDIKKVYYDTKEDGTMDLKIQPYIDEFAFDYYLVVRNIEELPQLLSSALRQWFQ 4712          
BLAST of EY685166 vs. ExPASy Swiss-Prot
Match: MDN1_YEAST (Midasin OS=Saccharomyces cerevisiae GN=MDN1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.579e-11
Identity = 34/102 (33.33%), Postives = 63/102 (61.76%), Query Frame = 2
Query:  107 NPLQQLVLIIGDGRFHEKENLKRWVRDLLSKKRMVAFLLVD--SPEESIVDLKELSF-----EGKEIKVSKYLDSFPFPYYIVLRNIEALPTTLADLLRHWF 391
            N   QL ++I DG   + E +++ VR     K M+ F+++D  +  ESI+D+ ++++        ++K++KYLD+FPF +Y+V+ +I  LP  L+ +LR +F
Sbjct: 4803 NDQWQLEIVISDGICEDHETIQKLVRRARENKIMLVFVIIDGITSNESILDMSQVNYIPDQYGNPQLKITKYLDTFPFEFYVVVHDISELPEMLSLILRQYF 4904          
The following BLAST results are available for this feature:
BLAST of EY685166 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
MDN1_DICDI1.927e-1434.95Midasin OS=Dictyostelium discoideum GN=mdn1 PE=3 S... [more]
MDN1_GIALA9.565e-1437.38Midasin OS=Giardia lamblia GN=MDN1 PE=3 SV=1[more]
MDN1_HUMAN4.747e-1340.00Midasin OS=Homo sapiens GN=MDN1 PE=1 SV=2[more]
MDN1_SCHPO6.200e-1334.95Midasin OS=Schizosaccharomyces pombe GN=mdn1 PE=1 ... [more]
MDN1_YEAST7.579e-1133.33Midasin OS=Saccharomyces cerevisiae GN=MDN1 PE=1 S... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C2-003-010-F01-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685166 ID=EY685166; Name=EY685166; organism=Citrus sinensis; type=EST; length=907bp
CGAGCAAGAGAATACCATTGCCGACGAACCAGTTTTGGATCTGTTGATGT
TCTTGAACAACATGCTGGATACTGCAGTTGCAAAAGCACGGTTGCCTTCA
GGACAAAACCCACTACAGCAGCTTGTTTTAATAATCGGCGATGGCCGATT
CCACGAGAAGGAGAACTTGAAGCGCTGGGTTAGGGATCTCTTAAGTAAGA
AGCGAATGGTGGCATTTTTGCTCGTGGATAGCCCAGAAGAATCAATTGTT
GACCTCAAGGAATTATCATTTGAGGGTAAGGAGATCAAGGTCTCAAAGTA
TCTAGATTCTTTCCCTTTCCCGTATTACATTGTATTGAGGAACATTGAAG
CACTTCCTACGACGCTCGCTGATTTATTGAGACACTGGTTTGAGGTGGAG
GGGGGGAGGACCGGAGAATAACAGTTCTCTCTCTCACTTTTTTTTTTTCT
ATCTCCGCTTTTGGGCCTATACGACAAACCAAACAACCCACGTAACCCCA
CCGANCGGCGCAACCGAGCCCGGGAGCCGAACCGCACAAAAGCAACCAAA
ACGACACAGCCCACAGATGCCACAGCCGCGGGACACCAAGAACCCCGCGA
CTCAACGCGCGGCCCAGGTGAGGCATGCGGCCCCCGAGGGCAACCCCACC
ACACCACCGCAACACCGCGGCGATCACCGACTCAACGCGCATGGACAACA
AACCAAGCGGACACACAGACGCGAACGACAGAAAGGAAAGCGGGACCCAG
AACGCACAACGGGCAGCACGGGCGCGCAAGCCCCCGCACAGATCACAGGC
GAACAGCCGCAAAACAGGCGAGAAGAGGAAAGAGACAACGGGGAAGGAGG
CCGCACCCAACCACAAGGACACGCCCCGTCGATGCCCCCACTCGAAACCA
AAGAATA
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