EY685163

Overview
NameEY685163
Unique NameEY685163
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1005
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY685163_ssr791 microsatellite EY685163_ssr791:791..802. BLAST: Citrus ESTs to Prunus persica proteins V1
EY685163_ssr659 microsatellite EY685163_ssr659:659..673. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY685163 vs. ExPASy Swiss-Prot
Match: SOC1_ARATH (MADS-box protein SOC1 OS=Arabidopsis thaliana GN=SOC1 PE=1 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.710e-38
Identity = 80/132 (60.61%), Postives = 106/132 (80.30%), Query Frame = 1
Query:  121 MVRGKIQMKKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSSEMQKTLERYYRYTEERQIDRNGMERYMQQLKHEIANMIEKIQHIEVSHRKLLGQDLRSRTHEQHRHLDHQLE 516
            MVRGK QMK+IEN TSRQVTFSKRRNG+LKKA+ELSVLCDAEV++IIFS KG+LYEF+SS MQ T++RY R+T++R   +   E  MQ LK+E ANM++KI+ +E S RKLLG+ + + + E+ + ++ QLE
Sbjct:    1 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSPKGKLYEFASSNMQDTIDRYLRHTKDRVSTKPVSEENMQHLKYEAANMMKKIEQLEASKRKLLGEGIGTCSIEELQQIEQQLE 132          
BLAST of EY685163 vs. ExPASy Swiss-Prot
Match: MAD50_ORYSJ (MADS-box transcription factor 50 OS=Oryza sativa subsp. japonica GN=MADS50 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.832e-32
Identity = 73/135 (54.07%), Postives = 101/135 (74.81%), Query Frame = 1
Query:  121 MVRGKIQMKKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSSEMQKTLERYYRYTEERQIDRNGMERYMQQLKHEIANMIEKIQHIEVSHRKLLGQDLRSRTHEQHRHLDHQLEPPL 525
            MVRGK QMK+IEN TSRQVTFSKRRNG+LKKA+ELSVLCDAEVA+I+FS +G+LYEF+S+  QKT+ERY  YT+E  I    +++ ++Q+K +   + +K++ +E   RKLLG+ L   + E+   L+ +LE  L
Sbjct:    1 MVRGKTQMKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEFASASTQKTIERYRTYTKE-NIGNKTVQQDIEQVKADADGLAKKLEALETYKRKLLGEKLDECSIEELHSLEVKLERSL 134          
BLAST of EY685163 vs. ExPASy Swiss-Prot
Match: MAD56_ORYSJ (MADS-box transcription factor 56 OS=Oryza sativa subsp. japonica GN=MADS56 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 5.329e-32
Identity = 69/138 (50.00%), Postives = 107/138 (77.54%), Query Frame = 1
Query:  121 MVRGKIQMKKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSS-EMQKTLERYYRYTEERQIDRNGMERYMQQLKHEIANMIEKIQHIEVSHRKLLGQDLRSRTHEQHRHLDHQLEPPLQQ 531
            MVRG+ ++K+IEN TSRQVTFSKRRNG+LKKA+ELSVLCDAEVA+I+FS +GRLYEF+S+  +QKT++RY  YT++  ++   +++ +QQ+K +   + +K++ ++ S RK+LG++L   + E+ R L+ +LE  L +
Sbjct:    1 MVRGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEFASAPSLQKTIDRYKAYTKD-HVNNKTIQQDIQQVKDDTLGLAKKLEALDESRRKILGENLEGFSIEELRGLEMKLEKSLHK 137          
BLAST of EY685163 vs. ExPASy Swiss-Prot
Match: MAD56_ORYSI (MADS-box transcription factor 56 OS=Oryza sativa subsp. indica GN=MADS56 PE=2 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 6.960e-32
Identity = 69/136 (50.74%), Postives = 106/136 (77.94%), Query Frame = 1
Query:  121 MVRGKIQMKKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSS-EMQKTLERYYRYTEERQIDRNGMERYMQQLKHEIANMIEKIQHIEVSHRKLLGQDLRSRTHEQHRHLDHQLEPPL 525
            MVRG+ ++K+IEN TSRQVTFSKRRNG+LKKA+ELSVLCDAEVA+I+FS +GRLYEF+S+  +QKT++RY  YT++  ++   +++ +QQ+K +   + +K++ ++ S RK+LG++L   + E+ R L+ +LE  L
Sbjct:    1 MVRGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEFASAPSLQKTIDRYKAYTKD-HVNNKTIQQDIQQVKDDTLGLAKKLEALDESRRKILGENLEGCSIEELRGLEMKLEKSL 135          
BLAST of EY685163 vs. ExPASy Swiss-Prot
Match: AGL14_ARATH (Agamous-like MADS-box protein AGL14 OS=Arabidopsis thaliana GN=AGL14 PE=2 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 1.550e-31
Identity = 73/138 (52.90%), Postives = 102/138 (73.91%), Query Frame = 1
Query:  121 MVRGKIQMKKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEF-SSSEMQKTLERYYRYTEERQIDRNGMERYMQQLKHEIANMIEKIQHIEVSHRKLLGQDLRSRTHEQHRHLDHQLEPPLQQ 531
            MVRGK +MK+IEN TSRQVTFSKRRNG+LKKA+ELSVLCDAEVA+IIFS +G+LYEF SSS + KT+ERY +  ++   +    +   QQ K E   +  KI+H+E+S RK++G+ L + + E+ + L++QL+  L +
Sbjct:    1 MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSSSSIPKTVERYQKRIQDLGSNHKRNDN-SQQSKDETYGLARKIEHLEISTRKMMGEGLDASSIEELQQLENQLDRSLMK 137          
BLAST of EY685163 vs. ExPASy Swiss-Prot
Match: AGL19_ARATH (Agamous-like MADS-box protein AGL19 OS=Arabidopsis thaliana GN=AGL19 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.645e-31
Identity = 73/138 (52.90%), Postives = 101/138 (73.19%), Query Frame = 1
Query:  121 MVRGKIQMKKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSSEMQKTLERYYRYTEERQIDRNGMER-YMQQLKHEIANMIEKIQHIEVSHRKLLGQDLRSRTHEQHRHLDHQLEPPLQQ 531
            MVRGK +MK+IEN TSRQVTFSKRRNG+LKKA+ELSVLCDAEVA++IFS + +LYEFSSS +  T+ERY R  +E  I  N       QQ + E + + +KI+ +E+S RKLLG+ + + + E+ + L++QL+  L +
Sbjct:    1 MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALVIFSPRSKLYEFSSSSIAATIERYQRRIKE--IGNNHKRNDNSQQARDETSGLTKKIEQLEISKRKLLGEGIDACSIEELQQLENQLDRSLSR 136          
BLAST of EY685163 vs. ExPASy Swiss-Prot
Match: MADS6_ORYSJ (MADS-box transcription factor 6 OS=Oryza sativa subsp. japonica GN=MADS6 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 4.222e-29
Identity = 68/137 (49.64%), Postives = 94/137 (68.61%), Query Frame = 1
Query:  121 MVRGKIQMKKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSSEMQKTLERYYRYTEERQIDRNGMERYMQQLKHEIANMIEKIQHIEVSHRKLLGQDLRSRTHEQHRHLDHQLEPPLQQ 531
            M RG++++K+IEN  +RQVTFSKRRNG+LKKAYELSVLCDAEVA+IIFS +G+LYEF S+ + KTLERY       Q   N +    Q   HE++ +  K + ++ + R LLG+DL   + ++ + L+ QLE  L Q
Sbjct:    1 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGITKTLERYQHCCYNAQDSNNALSE-TQSWYHEMSKLKAKFEALQRTQRHLLGEDLGPLSVKELQQLEKQLECALSQ 136          
BLAST of EY685163 vs. ExPASy Swiss-Prot
Match: CMB1_DIACA (MADS-box protein CMB1 OS=Dianthus caryophyllus GN=CMB1 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 7.202e-29
Identity = 71/142 (50.00%), Postives = 98/142 (69.01%), Query Frame = 1
Query:  121 MVRGKIQMKKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEF-SSSEMQKTLERYYRYT----EERQIDRNGMERYMQQLKHEIANMIEKIQHIEVSHRKLLGQDLRSRTHEQHRHLDHQLEPPLQQ 531
            M RG++++K+IEN  +RQVTF+KRRNG+LKKAYELSVLCDAEVA+I+FS +G+LYEF S+S M KTLERY R +    E  Q  +     Y + LK     +  K+  ++ SHR LLG+DL   + ++   L+HQL+  L+Q
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCSTSCMNKTLERYQRCSYGSLETSQPSKETESSYQEYLK-----LKAKVDVLQRSHRNLLGEDLGELSTKELEQLEHQLDKSLRQ 137          
BLAST of EY685163 vs. ExPASy Swiss-Prot
Match: MAD15_ORYSJ (MADS-box transcription factor 15 OS=Oryza sativa subsp. japonica GN=MADS15 PE=1 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 2.737e-28
Identity = 67/137 (48.91%), Postives = 93/137 (67.88%), Query Frame = 1
Query:  121 MVRGKIQMKKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSS-SEMQKTLERYYRYTEERQIDRNGMERYMQQLKHEIANMIEKIQHIEVSHRKLLGQDLRSRTHEQHRHLDHQLEPPLQ 528
            M RGK+Q+K+IEN  +RQVTFSKRRNG+LKKA+E+SVLCDAEVA I+FS KG+LYE+++ S M K LERY RY+   +   +          HE   +  KI+ I+  H+ L+G+DL S   ++ + L+ QLE  L+
Sbjct:    1 MGRGKVQLKRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAAIVFSPKGKLYEYATDSRMDKILERYERYSYAEKALISAESESEGNWCHEYRKLKAKIETIQKCHKHLMGEDLESLNLKELQQLEQQLESSLK 137          
BLAST of EY685163 vs. ExPASy Swiss-Prot
Match: MAD18_ORYSJ (MADS-box transcription factor 18 OS=Oryza sativa subsp. japonica GN=MADS18 PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 4.668e-28
Identity = 80/223 (35.87%), Postives = 122/223 (54.71%), Query Frame = 1
Query:  121 MVRGKIQMKKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSS-SEMQKTLERYYRYTEERQIDRNGMERYMQQLKHEIANMIEKIQHIEVSHRKLLGQDLRSRTHEQHRHLDHQLEPPLQQTSPTIGPDCCYKHGAHLQKGRKD-RSQTRTHPMICSRENAKXXXXXXXXXXXDSYAAVTRLDASPLTTRQSTDPTPTIASLNANP 783
            M RG +Q+++IEN  +RQVTFSKRRNG+LKKA+E+SVLCDA+VA+I+FS KG+LYEFSS S M+  LERY RY+ + +          +    E   +  K+  ++ S R+LLG+ L + T ++ + L+HQLE  L+           ++  + LQK  K  ++Q      +   E  K            + A  +    +P+T   + DP PT  +  + P
Sbjct:    1 MGRGPVQLRRIENKINRQVTFSKRRNGLLKKAHEISVLCDADVALIVFSTKGKLYEFSSHSSMEGILERYQRYSFDERAVLEPNTEDQENWGDEYGILKSKLDALQKSQRQLLGEQLDTLTIKELQQLEHQLEYSLKHIRSKKN-QLLFESISELQKKEKSLKNQNNVLQKLMETEKEKNNAIINTNREEQNGATPSTSSPTPVT---APDPIPTTNNSQSQP 219          
The following BLAST results are available for this feature:
BLAST of EY685163 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
SOC1_ARATH1.710e-3860.61MADS-box protein SOC1 OS=Arabidopsis thaliana GN=S... [more]
MAD50_ORYSJ1.832e-3254.07MADS-box transcription factor 50 OS=Oryza sativa s... [more]
MAD56_ORYSJ5.329e-3250.00MADS-box transcription factor 56 OS=Oryza sativa s... [more]
MAD56_ORYSI6.960e-3250.74MADS-box transcription factor 56 OS=Oryza sativa s... [more]
AGL14_ARATH1.550e-3152.90Agamous-like MADS-box protein AGL14 OS=Arabidopsis... [more]
AGL19_ARATH2.645e-3152.90Agamous-like MADS-box protein AGL19 OS=Arabidopsis... [more]
MADS6_ORYSJ4.222e-2949.64MADS-box transcription factor 6 OS=Oryza sativa su... [more]
CMB1_DIACA7.202e-2950.00MADS-box protein CMB1 OS=Dianthus caryophyllus GN=... [more]
MAD15_ORYSJ2.737e-2848.91MADS-box transcription factor 15 OS=Oryza sativa s... [more]
MAD18_ORYSJ4.668e-2835.87MADS-box transcription factor 18 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-010-E09-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685163 ID=EY685163; Name=EY685163; organism=Citrus sinensis; type=EST; length=1005bp
CTTTCTTCTTGCCTCTCCATTTTTGTAGAATTTTCTGTTTGGTTTCTGGG
TTGAAATTTTTTTATCTAGAAAAATTTCTGCACGAAAATCTGTTGTCCGG
GTACTTCCCAAATACTGGCCATGGTGAGGGGAAAAATTCAGATGAAGAAA
ATAGAGAATGATACAAGCCGGCAAGTGACATTTTCAAAGCGTCGAAATGG
GATGTTGAAGAAGGCTTACGAGCTTTCGGTTCTTTGCGATGCTGAAGTTG
CTGTTATTATCTTCTCACAGAAAGGAAGGCTCTATGAGTTTTCAAGTTCT
GAAATGCAAAAGACGTTAGAACGATACTATAGATACACAGAAGAAAGGCA
AATTGACAGGAATGGAATGGAGCGATACATGCAGCAATTGAAGCATGAGA
TAGCGAATATGATTGAGAAGATCCAGCATATTGAAGTTTCTCACCGGAAG
CTTTTAGGACAGGACCTGCGTTCCCGTACCCACGAGCAACACCGCCACCT
CGACCACCAGCTCGAACCACCCTTGCAGCAGACATCCCCCACCATCGGAC
CCGACTGCTGTTACAAACATGGTGCGCATTTACAAAAAGGGAGGAAAGAC
CGCAGCCAAACACGAACACACCCCATGATCTGCAGTCGAGAAAACGCCAA
ATAGCCCACACCCCACCCCACCCGCACGCACCCCGACTCCTACGCGGCGG
TAACACGGCTTGACGCCTCGCCCCTGACTACACGCCAGTCCACTGATCCC
ACCCCGACAATCGCCTCCCTCAATGCCAACCCCTCCTGAGCACCCACCCA
CCTCCCATCGCATCCCTATTTATCCGCGCGTACCCTCCGCCCAGCACCCC
ACCTCCATACCCTACCCGAGCAAAACCGACCCCCAACCACGCGACGTCCT
GCCGCTAACATTGCCGGACGAAACAACCCCTCCCCCACGACGCGCTACGA
ACCGCCCGAACACACGCCCACCCACCCCGACTACGACACCCGCCGCGCGC
CTGCA
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