EY685162

Overview
NameEY685162
Unique NameEY685162
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length956
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY685162 vs. ExPASy Swiss-Prot
Match: CHIP_ARATH (E3 ubiquitin-protein ligase CHIP OS=Arabidopsis thaliana GN=CHIP PE=1 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 3.497e-54
Identity = 102/179 (56.98%), Postives = 132/179 (73.74%), Query Frame = 2
Query:   20 IQLDLYSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSXXXXXXXXXXXXHVLDISRKEGFLDEASSTHLKQMEALRQVFRKAAQHDTPAEVPDYLCCKITLDIFRDPVITPSGVTYDRAVILDHLDKVGKFDPITHLTMD 556
            IQL   SVK HY+LG  LLQ+ E+ +G+KEL++AL+LGR + P GY+VE+IW+EL++AKY+ WE  S+ RSWEL S              LD+SR E   DEA + H ++++AL +VF+KAA+ D P EVPDYLCC ITL+IFRDPVI+PSGVTY+RA IL+HL KVGKFDPIT   +D
Sbjct:   71 IQLVHNSVKAHYMLGLALLQKKEFTNGVKELQRALDLGRCSNPTGYMVEEIWEELSKAKYMEWELVSAMRSWELNSLKETCEAALNQQRALDMSRTEESSDEAYTAHTERLKALERVFKKAAEEDKPTEVPDYLCCNITLEIFRDPVISPSGVTYERAAILEHLKKVGKFDPITREKID 249          
BLAST of EY685162 vs. ExPASy Swiss-Prot
Match: STUB1_CHICK (STIP1 homology and U box-containing protein 1 OS=Gallus gallus GN=STUB1 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.813e-18
Identity = 62/195 (31.79%), Postives = 97/195 (49.74%), Query Frame = 2
Query:   20 IQLDLYSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKR---SWELQSXXXXXXXXXXXXHVLDI--SRKEGFLDEA---------SSTHLKQMEALRQVFRKAAQHDTPAEVPDYLCCKITLDIFRDPVITPSGVTYDRAVILDHLDKVGKFDPITH--LTMD 556
            ++LD  SVK H+ LGQ  ++   Y + I  L++A NL +  +      +DI   L  AK   W     KR     EL S             + +   +++E  +DE+          + H K +  + ++F +  +     ++PDYLC KI+ ++ R+P ITPSG+TYDR  I +HL +VG FDP+T   LT D
Sbjct:   97 LELDGQSVKAHFFLGQCQMEMENYDEAIANLQRAYNLAKEQRLN--FGDDIPSALRIAKKKRWNSIEEKRINQENELHSYLTRLIMAEKERELAECRKAQQEENVDESRGRVQLAGIEAKHDKYLADMDELFSQVDEKRKKRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQD 289          
BLAST of EY685162 vs. ExPASy Swiss-Prot
Match: STUB1_MOUSE (STIP1 homology and U box-containing protein 1 OS=Mus musculus GN=Stub1 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.367e-18
Identity = 60/187 (32.09%), Postives = 91/187 (48.66%), Query Frame = 2
Query:   20 IQLDLYSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKR---SWELQSXXXXXXXXXXXXHVLDISRK-EGFLDEA---------SSTHLKQMEALRQVFRKAAQHDTPAEVPDYLCCKITLDIFRDPVITPSGVTYDRAVILDHLDKVGKFDPIT 541
            ++LD  SVK H+ LGQ  L+   Y + I  L++A +L +  +      +DI   L  AK   W     +R     EL S             + +  R  EG  D+           + H K M  + ++F +  +     ++PDYLC KI+ ++ R+P ITPSG+TYDR  I +HL +VG FDP+T
Sbjct:   88 LELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLN--FGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKRKKRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVT 272          
BLAST of EY685162 vs. ExPASy Swiss-Prot
Match: STUB1_HUMAN (STIP1 homology and U box-containing protein 1 OS=Homo sapiens GN=STUB1 PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 3.092e-18
Identity = 60/187 (32.09%), Postives = 92/187 (49.20%), Query Frame = 2
Query:   20 IQLDLYSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKR---SWELQSXXXXXXXXXXXXHVLDISRK-EGFLDEA---------SSTHLKQMEALRQVFRKAAQHDTPAEVPDYLCCKITLDIFRDPVITPSGVTYDRAVILDHLDKVGKFDPIT 541
            ++LD  SVK H+ LGQ  L+   Y + I  L++A +L +  +      +DI   L  AK   W     +R     EL S             + +  R  EG  D++          + H K M  + ++F +  +     ++PDYLC KI+ ++ R+P ITPSG+TYDR  I +HL +VG FDP+T
Sbjct:   87 LELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLN--FGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLSRLIAAERERELEECQRNHEGDEDDSHVRAQQACIEAKHDKYMADMDELFSQVDEKRKKRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVT 271          
The following BLAST results are available for this feature:
BLAST of EY685162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
CHIP_ARATH3.497e-5456.98E3 ubiquitin-protein ligase CHIP OS=Arabidopsis th... [more]
STUB1_CHICK1.813e-1831.79STIP1 homology and U box-containing protein 1 OS=G... [more]
STUB1_MOUSE2.367e-1832.09STIP1 homology and U box-containing protein 1 OS=M... [more]
STUB1_HUMAN3.092e-1832.09STIP1 homology and U box-containing protein 1 OS=H... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C2-003-010-E08-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685162 ID=EY685162; Name=EY685162; organism=Citrus sinensis; type=EST; length=956bp
CCACGCGTCCGAGGAAAGAATTCAGTTGGACCTTTATTCTGTCAAGGGAC
ACTATTTGTTGGGACAAACGTTGCTACAGAGGAACGAGTATGCTGATGGA
ATCAAGGAACTGGAAAAAGCTTTGAATCTTGGGAGGGGTGCAAAGCCAAA
GGGTTATATTGTAGAGGATATTTGGCAGGAGCTGGCAAGAGCAAAATACC
TGTTGTGGGAGCAAGAATCTAGCAAGCGTTCATGGGAATTACAAAGCTTG
AAGGAAGCTTGTGAAGCAGCTCTTGAAGAAAAGCATGTTCTTGATATTTC
TAGAAAAGAAGGGTTTTTGGATGAAGCTAGTTCTACTCATTTGAAACAAA
TGGAGGCTTTGAGACAAGTATTCCGGAAAGCTGCCCAACATGACACGCCA
GCTGAGGTCCCGGATTACCTGTGTTGCAAAATAACTCTTGATATTTTTCG
AGATCCTGTCATTACTCCAAGTGGGGTTACTTATGACAGGGCAGTAATCC
TTGATCATCTTGATAAAGTGGGTAAGTTTGATCCAATCACACATCTAACC
ATGGACATATTTACAGCTCTCCACCAACCCTGGCACTAAGCGCATGACGC
TCTCACGCACACTCGGAGAGCTCCGCTAAGACCACAACGCACAACCATCC
AACGCTACCAGCCGACCCACGAACGTTAAGTAGGAACTCAATATTCCAAC
ACGACTTAATTCCCCACGATGGCACTTCCCACACCTCAAAGAAACACACC
CCTGCCACTCCCCGCCTTCCCCCACCGCCTCCCCCACCCACCCCTCCCCC
CACCCCCTCACCCGCCCCCCGGCGCCGTCACACACCCCACCACAAACACA
CGACCTCCAGAGCCGCACCCCCGCGCGCCTCGCCACCCATCCAACCGAAC
CTCCACCCACCTACCTCCATCGACCGATGTACCTCGCCCCCCCCTACCCA
CCCTCA
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