EY710384

Overview
NameEY710384
Unique NameEY710384
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1016
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY710384_ssr11 microsatellite EY710384_ssr11:11..22. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY710384 vs. ExPASy Swiss-Prot
Match: DXR_ARATH (1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic OS=Arabidopsis thaliana GN=DXR PE=2 SV=2)

HSP 1 Score: 161.384 bits (407), Expect = 2.054e-44
Identity = 86/132 (65.15%), Postives = 105/132 (79.55%), Query Frame = 2
Query:   59 LMALNLQIPAEIKALSFLETTRSNHRLPKLSGGFPLKRKDNATATFGRIVQCSA-----QGPPPAWPGRAVTETFRKT*EGPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFEP 439
            +M LN   PAE KA+SFL+T+R N  +PKLSGGF L+R++     FG+ V+CS      Q PPPAWPGRAV E  R++ +GPKPIS++GSTGSIGTQTLDIVAE+ DKFRVVALAAGSN+TLLADQV+RF+P
Sbjct:    1 MMTLNSLSPAESKAISFLDTSRFNP-IPKLSGGFSLRRRNQGRG-FGKGVKCSVKVQQQQQPPPAWPGRAVPEAPRQSWDGPKPISIVGSTGSIGTQTLDIVAENPDKFRVVALAAGSNVTLLADQVRRFKP 130          

HSP 2 Score: 40.0466 bits (92), Expect = 2.054e-44
Identity = 25/59 (42.37%), Postives = 36/59 (61.02%), Query Frame = 3
Query:  447 IADNNESLLAEIKEALANVEYKPKILSWGKGVIEA*LTPIACDVRS*YIR*CRLKARVA 623
            +A  NESL+ E+KEALA+++YK +I+   +GVIE    P A  V +  +    LK  VA
Sbjct:  133 VAVRNESLINELKEALADLDYKLEIIPGEQGVIEVARHPEAVTVVTGIVGCAGLKPTVA 191          
BLAST of EY710384 vs. ExPASy Swiss-Prot
Match: DXR_MENPI (1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic OS=Mentha piperita GN=DXR PE=2 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 7.221e-37
Identity = 83/123 (67.48%), Postives = 95/123 (77.24%), Query Frame = 2
Query:   83 PAEIKALSFLETTRSNHRLP--KLSGGFPLKRKDNATATFGRIVQCSAQG--PPPAWPGRAVTETFRKT*EGPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFEP 439
            P EIK LSFL++++SN+ L   K  GGF  KRKD+   T  + V CSAQ   PPPAWPGRA  E  R T EGPKPISV+GSTGSIGTQTLDIVAE+ DKFR+VALAAGSN+TLLADQVK F+P
Sbjct:    3 PTEIKTLSFLDSSKSNYNLNPLKFQGGFAFKRKDSG-CTAAKRVHCSAQSQSPPPAWPGRAFPEPGRMTWEGPKPISVIGSTGSIGTQTLDIVAENPDKFRIVALAAGSNVTLLADQVKAFKP 124          
BLAST of EY710384 vs. ExPASy Swiss-Prot
Match: DXR_ORYSJ (1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic OS=Oryza sativa subsp. japonica GN=DXR PE=2 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 1.028e-36
Identity = 71/127 (55.91%), Postives = 89/127 (70.08%), Query Frame = 2
Query:   62 MALNL-QIPAEIKALSFLETTRSNHRLPKLSGGFPLKRKDNATATFGRIVQCSAQGPPPAWPGRAVTETFRKT*EGPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFEP 439
            MAL +   P ++ A+SFL++ R      +L    P + +D    +  R      Q PPPAWPGRAV E  R++ +GPKPIS++GSTGSIGTQTLDIVAE+ DKFRVVALAAGSN+TLLADQVK F+P
Sbjct:    1 MALKVVSFPGDLAAVSFLDSNRGG-AFNQLKVDLPFQTRDRRAVSLRRTCCSMQQAPPPAWPGRAVVEPGRRSWDGPKPISIVGSTGSIGTQTLDIVAENPDKFRVVALAAGSNVTLLADQVKTFKP 126          

HSP 2 Score: 40.817 bits (94), Expect = 1.028e-36
Identity = 25/59 (42.37%), Postives = 36/59 (61.02%), Query Frame = 3
Query:  447 IADNNESLLAEIKEALANVEYKPKILSWGKGVIEA*LTPIACDVRS*YIR*CRLKARVA 623
            +A  NESL+ E+KEALA+ ++KP+I+   +GVIE    P A  V +  +    LK  VA
Sbjct:  129 VAVRNESLVDELKEALADCDWKPEIIPGEQGVIEVARHPDAVTVVTGIVGCAGLKPTVA 187          
BLAST of EY710384 vs. ExPASy Swiss-Prot
Match: DXR_MICAN (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Microcystis aeruginosa (strain NIES-843) GN=dxr PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 5.041e-17
Identity = 34/52 (65.38%), Postives = 44/52 (84.62%), Query Frame = 2
Query:  290 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFEPHV 445
            K IS+LGSTGSIGTQTLDIV +H DKF+VV LA G+NI LL++Q+++F P +
Sbjct:    2 KKISILGSTGSIGTQTLDIVTDHPDKFQVVGLATGNNIQLLSEQIRQFRPQI 53          

HSP 2 Score: 33.8834 bits (76), Expect = 5.041e-17
Identity = 15/34 (44.12%), Postives = 25/34 (73.53%), Query Frame = 3
Query:  447 IADNNESLLAEIKEALANVEYKPKILSWGKGVIE 548
            +A NNES L ++K  +++++Y P IL+  +GVIE
Sbjct:   54 VAINNESQLEDLKSLISDLDYTPIILAGKEGVIE 87          
BLAST of EY710384 vs. ExPASy Swiss-Prot
Match: DXR_CYAP7 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Cyanothece sp. (strain PCC 7424) GN=dxr PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 5.954e-14
Identity = 35/52 (67.31%), Postives = 44/52 (84.62%), Query Frame = 2
Query:  290 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFEPHV 445
            K ISVLGSTGSIGTQTLDIVA++ D+F+VV LAAG+N+ LL+ QV +F P +
Sbjct:    2 KKISVLGSTGSIGTQTLDIVAQYPDQFQVVGLAAGNNVELLSAQVHQFRPEI 53          

HSP 2 Score: 26.5646 bits (57), Expect = 5.954e-14
Identity = 12/34 (35.29%), Postives = 22/34 (64.71%), Query Frame = 3
Query:  447 IADNNESLLAEIKEALANVEYKPKILSWGKGVIE 548
            +A  N   L  +KE+L++++Y P IL   +G++E
Sbjct:   54 VAICNLDHLEVLKESLSSLDYSPIILGGEQGIVE 87          
BLAST of EY710384 vs. ExPASy Swiss-Prot
Match: DXR_CYAP8 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Cyanothece sp. (strain PCC 8801) GN=dxr PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 8.140e-13
Identity = 31/52 (59.62%), Postives = 41/52 (78.85%), Query Frame = 2
Query:  290 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFEPHV 445
            K I++LGSTGSIGTQTLDIV ++ D+F+VV LA  +N  LLA Q+K+F P +
Sbjct:    2 KKITILGSTGSIGTQTLDIVQQYPDQFQVVGLATRNNGELLAQQIKQFRPEI 53          

HSP 2 Score: 29.6462 bits (65), Expect = 8.140e-13
Identity = 14/34 (41.18%), Postives = 23/34 (67.65%), Query Frame = 3
Query:  447 IADNNESLLAEIKEALANVEYKPKILSWGKGVIE 548
            +A   ES L  IK+A+A+++Y P +L+   GV+E
Sbjct:   54 VAICQESQLNTIKDAIASLDYSPILLTGEAGVVE 87          
BLAST of EY710384 vs. ExPASy Swiss-Prot
Match: DXR_NOSP7 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=dxr PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.006e-12
Identity = 30/52 (57.69%), Postives = 44/52 (84.62%), Query Frame = 2
Query:  290 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFEPHV 445
            K I+++GSTGSIGTQTLDIV ++ D+FR+V LAAG+N+ +LA Q+++F P +
Sbjct:    2 KAITLVGSTGSIGTQTLDIVTQYPDQFRIVGLAAGNNVEMLAAQIRQFRPKI 53          

HSP 2 Score: 23.8682 bits (50), Expect = 3.006e-12
Identity = 11/30 (36.67%), Postives = 20/30 (66.67%), Query Frame = 3
Query:  459 NESLLAEIKEALANVEYKPKILSWGKGVIE 548
            +E  L  +KEA+ +++ +P +L+   GVIE
Sbjct:   58 SEDKLPALKEAIIDLDPQPILLAGEAGVIE 87          
BLAST of EY710384 vs. ExPASy Swiss-Prot
Match: DXR_ANAVT (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=dxr PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.609e-12
Identity = 31/52 (59.62%), Postives = 46/52 (88.46%), Query Frame = 2
Query:  290 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFEPHV 445
            K I+++GSTGSIGTQTLDIV+++ D+FR+V LAAGSN+ +LA+Q+++F P +
Sbjct:    2 KSITLVGSTGSIGTQTLDIVSQYPDQFRIVGLAAGSNVEMLAEQIRQFRPQI 53          
BLAST of EY710384 vs. ExPASy Swiss-Prot
Match: DXR_ANASP (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Anabaena sp. (strain PCC 7120) GN=dxr PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.609e-12
Identity = 31/52 (59.62%), Postives = 46/52 (88.46%), Query Frame = 2
Query:  290 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFEPHV 445
            K I+++GSTGSIGTQTLDIV+++ D+FR+V LAAGSN+ +LA+Q+++F P +
Sbjct:    3 KSITLVGSTGSIGTQTLDIVSQYPDQFRIVGLAAGSNVEMLAEQIRQFRPQI 54          
BLAST of EY710384 vs. ExPASy Swiss-Prot
Match: DXR_SYNY3 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Synechocystis sp. (strain PCC 6803) GN=dxr PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.713e-12
Identity = 35/52 (67.31%), Postives = 39/52 (75.00%), Query Frame = 2
Query:  290 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFEPHV 445
            K IS+LGSTGSIGTQTLDIV  H D F+VV LAAG N+ LLA QV  F P +
Sbjct:    3 KRISILGSTGSIGTQTLDIVTHHPDAFQVVGLAAGGNVALLAQQVAEFRPEI 54          
The following BLAST results are available for this feature:
BLAST of EY710384 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
DXR_ARATH2.054e-4465.151-deoxy-D-xylulose 5-phosphate reductoisomerase, c... [more]
DXR_MENPI7.221e-3767.481-deoxy-D-xylulose 5-phosphate reductoisomerase, c... [more]
DXR_ORYSJ1.028e-3655.911-deoxy-D-xylulose 5-phosphate reductoisomerase, c... [more]
DXR_MICAN5.041e-1765.381-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CYAP75.954e-1467.311-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CYAP88.140e-1359.621-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_NOSP73.006e-1257.691-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_ANAVT3.609e-1259.621-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_ANASP3.609e-1259.621-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SYNY34.713e-1267.311-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-107-D02-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY710384 ID=EY710384; Name=EY710384; organism=Citrus sinensis; type=EST; length=1016bp
AACTTGTGTTGAGAGAGAGAGATAAAAAGAGGAGAAAAAAAAAAAGGTTG
TTAAAGCTTTGATGGCATTGAATTTGCAGATCCCAGCTGAAATCAAGGCT
CTCTCTTTCTTGGAGACAACCAGGTCAAATCATCGCCTCCCCAAGCTCTC
AGGTGGGTTTCCTTTGAAGAGGAAGGATAATGCAACGGCGACGTTTGGTA
GAATAGTTCAATGTTCTGCTCAGGGACCTCCTCCTGCATGGCCAGGCCGA
GCTGTTACAGAGACTTTTCGTAAGACTTGAGAAGGTCCAAAGCCAATCTC
AGTGCTTGGGTCAACTGGTTCTATTGGAACTCAGACGTTGGACATAGTTG
CGGAGCATGAAGATAAATTCAGAGTTGTGGCACTGGCAGCTGGATCAAAT
ATAACTCTTCTTGCTGATCAGGTGAAGAGATTCGAACCTCACGTACATTG
CTGATAACAATGAGTCATTACTTGCAGAAATCAAGGAGGCATTGGCTAAT
GTTGAATACAAGCCCAAGATTTTGAGCTGGGGAAAGGGAGTCATTGAAGC
TTAGCTGACACCCATAGCTTGCGACGTGAGGTCATAGTATATCCGTTGAT
GTCGATTGAAAGCAAGAGTTGCTAGAGAGTACTAAGATCAGAATGAATTA
GGCAGAAAAGAGAAATATATGACATGGGTATGTTGTCATATCTAGATTAC
AAGTAGATATAAATAAAACAGAAGACGAGAAATGCATCACCTGACGGAAG
GAGGTGTACGAGAGGAGATATCAAGTATATATACTGAAGGAGGATGATAG
AAACTGGAGAATAGAGCAACGTGGTACGAAGTAAAAGATAAGAATAAACG
ATAATAGAGGAATAGAGAAAACATACCTATACTAATGAAGGAAGAAAGAT
GATGAAAAACGATTAAATGAAATCAACTAGGGCGTGTATAGAAGAGCGGT
GATCTTATTATCGTGTGACAAGAAAATCTATACGTGGCAGACGGTTGACG
AAGAATCACGAGAACG
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