EY685157

Overview
NameEY685157
Unique NameEY685157
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length940
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY685157 vs. ExPASy Swiss-Prot
Match: AMY3_WHEAT (Alpha-amylase AMY3 OS=Triticum aestivum GN=AMY1.1 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.829e-15
Identity = 40/72 (55.56%), Postives = 52/72 (72.22%), Query Frame = 2
Query:  188 EILFQGFNWESCKHD--WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKAL 397
            +ILFQGFNWES K    W++ ++ KV +I+ +G T VWLPP + S +PEGYLP  LY+LNS YGS   LK+L
Sbjct:   26 QILFQGFNWESWKTQGGWYKFMQGKVEEIASTGATHVWLPPPSQSVSPEGYLPGQLYNLNSKYGSGADLKSL 97          
BLAST of EY685157 vs. ExPASy Swiss-Prot
Match: AMYA_VIGMU (Alpha-amylase OS=Vigna mungo GN=AMY1.1 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.389e-15
Identity = 38/71 (53.52%), Postives = 53/71 (74.65%), Query Frame = 2
Query:  191 ILFQGFNWESCKHD-WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSS-YGSEHLLKAL 397
            +LFQGFNWES K   W+ +L+  +PD++ +G T VWLPP + S +PEGYLP  LY L++S YGS++ LK+L
Sbjct:   25 LLFQGFNWESSKKGGWYNSLKNSIPDLANAGITHVWLPPPSQSVSPEGYLPGRLYDLDASKYGSKNELKSL 95          
BLAST of EY685157 vs. ExPASy Swiss-Prot
Match: AMY3_HORVU (Alpha-amylase type B isozyme (Fragment) OS=Hordeum vulgare GN=AMY1.3 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.951e-15
Identity = 43/84 (51.19%), Postives = 59/84 (70.24%), Query Frame = 2
Query:  161 LGAVIRNGREILFQGFNWESCKHD--WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSS-YGSEHLLKALGG 403
            L A + +G ++LFQGFNWES KH+  W+  L  KV DI+ +G T VWLPPA+ S A +GY+P  LY L++S YG++  LK+L G
Sbjct:   17 LSASLASG-QVLFQGFNWESWKHNGGWYNFLMGKVDDIAAAGITHVWLPPASQSVAEQGYMPGRLYDLDASKYGNKAQLKSLIG 99          
BLAST of EY685157 vs. ExPASy Swiss-Prot
Match: AMY3D_ORYSJ (Alpha-amylase isozyme 3D OS=Oryza sativa subsp. japonica GN=AMY1.3 PE=2 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 6.951e-15
Identity = 39/73 (53.42%), Postives = 53/73 (72.60%), Query Frame = 2
Query:  188 EILFQGFNWESCKHD--WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSS-YGSEHLLKAL 397
            ++LFQGFNWES K    W+  L+ +V DI+K+G T VWLPP +HS AP+GY+P  LY L++S YG+   LK+L
Sbjct:   26 QVLFQGFNWESWKQQGGWYNMLKGQVDDIAKAGVTHVWLPPPSHSVAPQGYMPGRLYDLDASKYGTAAELKSL 98          
BLAST of EY685157 vs. ExPASy Swiss-Prot
Match: AMY2_HORVU (Alpha-amylase type B isozyme OS=Hordeum vulgare GN=AMY1.2 PE=1 SV=3)

HSP 1 Score: 81.6481 bits (200), Expect = 6.951e-15
Identity = 43/84 (51.19%), Postives = 59/84 (70.24%), Query Frame = 2
Query:  161 LGAVIRNGREILFQGFNWESCKHD--WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSS-YGSEHLLKALGG 403
            L A + +G ++LFQGFNWES KH+  W+  L  KV DI+ +G T VWLPPA+ S A +GY+P  LY L++S YG++  LK+L G
Sbjct:   17 LSASLASG-QVLFQGFNWESWKHNGGWYNFLMGKVDDIAAAGITHVWLPPASQSVAEQGYMPGRLYDLDASKYGNKAQLKSLIG 99          
BLAST of EY685157 vs. ExPASy Swiss-Prot
Match: AMY3A_ORYSJ (Alpha-amylase isozyme 3A OS=Oryza sativa subsp. japonica GN=AMY1.2 PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 9.078e-15
Identity = 39/73 (53.42%), Postives = 53/73 (72.60%), Query Frame = 2
Query:  188 EILFQGFNWESCKHD--WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSS-YGSEHLLKAL 397
            +ILFQGFNW+S K    W+  L+ +V DI+ +G T VWLPP THS +P+GY+P  LY LN+S YG++  LK+L
Sbjct:   29 QILFQGFNWDSWKKQGGWYNMLKDQVGDIASAGVTHVWLPPPTHSVSPQGYMPGRLYDLNASKYGTKAELKSL 101          
BLAST of EY685157 vs. ExPASy Swiss-Prot
Match: AMY6_HORVU (Alpha-amylase type B isozyme OS=Hordeum vulgare GN=AMY1.6 PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.548e-14
Identity = 40/75 (53.33%), Postives = 54/75 (72.00%), Query Frame = 2
Query:  188 EILFQGFNWESCKHD--WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSS-YGSEHLLKALGG 403
            ++LFQGFNWES KH+  W+  L  KV DI+ +G T VWLPPA+ S A +GY+P  LY L++S YG++  LK+L G
Sbjct:   25 QVLFQGFNWESWKHNGGWYNFLMGKVDDIAAAGVTHVWLPPASQSVAEQGYMPGRLYDLDASKYGNKAQLKSLIG 99          
BLAST of EY685157 vs. ExPASy Swiss-Prot
Match: AMY3E_ORYSJ (Alpha-amylase isozyme 3E OS=Oryza sativa subsp. japonica GN=AMY1.4 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.505e-14
Identity = 37/73 (50.68%), Postives = 52/73 (71.23%), Query Frame = 2
Query:  188 EILFQGFNWESCKHD--WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSS-YGSEHLLKAL 397
            ++LFQGFNWES +    W+  L  KV +I+ +G T VWLPP +HS +P+GY+P  LY L++S YG+E  LK+L
Sbjct:   26 QVLFQGFNWESWRKQGGWYNFLHEKVEEIASTGATHVWLPPPSHSVSPQGYMPGRLYDLDASKYGTEAELKSL 98          
BLAST of EY685157 vs. ExPASy Swiss-Prot
Match: AMY1_HORVU (Alpha-amylase type A isozyme OS=Hordeum vulgare GN=AMY1.1 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.505e-14
Identity = 39/82 (47.56%), Postives = 55/82 (67.07%), Query Frame = 2
Query:  167 AVIRNGREILFQGFNWESCKHD--WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSS-YGSEHLLKALGG 403
            A + +G ++LFQGFNWES K    W+  +  KV DI+ +G T VWLPP +HS + EGY+P  LY +++S YG+   LK+L G
Sbjct:   19 AGLASGHQVLFQGFNWESWKQSGGWYNMMMGKVDDIAAAGVTHVWLPPPSHSVSNEGYMPGRLYDIDASKYGNAAELKSLIG 100          
BLAST of EY685157 vs. ExPASy Swiss-Prot
Match: AMY1_ORYSJ (Alpha-amylase OS=Oryza sativa subsp. japonica GN=AMY1.1 PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 5.884e-14
Identity = 41/84 (48.81%), Postives = 55/84 (65.48%), Query Frame = 2
Query:  188 EILFQGFNWESCKHD--WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSS-YGSEHLLKALGGGDETAHSQG 430
            ++LFQGFNWES K +  W+  L  KV DI+ +G T VWLPP +HS   +GY+P  LY L++S YG+E  LK+L    E  H +G
Sbjct:   32 QVLFQGFNWESWKENGGWYNFLMGKVDDIAAAGITHVWLPPPSHSVGEQGYMPGRLYDLDASKYGNEAQLKSL---IEAFHGKG 112          
The following BLAST results are available for this feature:
BLAST of EY685157 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
AMY3_WHEAT1.829e-1555.56Alpha-amylase AMY3 OS=Triticum aestivum GN=AMY1.1 ... [more]
AMYA_VIGMU2.389e-1553.52Alpha-amylase OS=Vigna mungo GN=AMY1.1 PE=2 SV=1[more]
AMY3_HORVU6.951e-1551.19Alpha-amylase type B isozyme (Fragment) OS=Hordeum... [more]
AMY3D_ORYSJ6.951e-1553.42Alpha-amylase isozyme 3D OS=Oryza sativa subsp. ja... [more]
AMY2_HORVU6.951e-1551.19Alpha-amylase type B isozyme OS=Hordeum vulgare GN... [more]
AMY3A_ORYSJ9.078e-1553.42Alpha-amylase isozyme 3A OS=Oryza sativa subsp. ja... [more]
AMY6_HORVU1.548e-1453.33Alpha-amylase type B isozyme OS=Hordeum vulgare GN... [more]
AMY3E_ORYSJ4.505e-1450.68Alpha-amylase isozyme 3E OS=Oryza sativa subsp. ja... [more]
AMY1_HORVU4.505e-1447.56Alpha-amylase type A isozyme OS=Hordeum vulgare GN... [more]
AMY1_ORYSJ5.884e-1448.81Alpha-amylase OS=Oryza sativa subsp. japonica GN=A... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-010-E03-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685157 ID=EY685157; Name=EY685157; organism=Citrus sinensis; type=EST; length=940bp
ATCGGCTAACGTATTAGCGCTAACCTACGCTGCGATCCCAACTTACTTTT
TTGATTATCTCGGTGCTTTATTTCCTGCGATCCAGCGTCAGACGGCTACC
CCTTGAGTTGATATGGATTACACGAGCAAGGGTTTTGATGAAACTAACCA
GCAAACTGATCTTGGTGCGGTTATACGCAATGGACGAGAAATTCTGTTTC
AGGGTTTCAATTGGGAGTCTTGCAAACATGATTGGTGGAGAAATTTAGAA
AGGAAAGTTCCCGACATTTCAAAATCTGGGTTCACATCAGTGTGGTTGCC
TCCTGCAACTCATTCCTTTGCACCTGAAGGTTACCTACCACAGAACCTTT
ATTCCCTTAATTCTTCATATGGCTCTGAACACCTGCTAAAAGCTTTGGGG
GGGGGAGATGAAACAGCACATAGTCAGGGCAATGGCTGACATAAATATCC
CATCATCGTGATGGCACTACCCCAGGGCATGGAGGAAAGGACCATCGATA
TCAAGGGTACACCGAAATACTGGGGGGAACCTGCCCATACATACTGAACC
GGAGGGCACGGCAGAGGCCAAAATGACGCAAGACTGCAAGGACACGAGAG
CTCATAGCGACACCCGGCGAACCCTGCAAACCGAAGAATACGCGAACGCC
AACCCGCGTCTTCACACTAACTGTGACACCCAAACAACTACACACATCGT
TCTAACACAACTCACGAGCACAACCTGCACCGCGGCAAGCGGGTCGAAAG
GCCGGCACACGCACGCGGCCGAAGCGGCACCAACGGCCGCCCACGCAGCC
GGGTCGCCGACGGAGCAAGCCAGGGGAGCACGCGACGGCACACCCGCAGG
CAAAACCGCATAACAATCGACACCTATGGCGACGCACACCGCGCCTCAGA
ACCACCCCGCCATGGCGGGGCCCCCAACACCACGCACTAC
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