EY685068

Overview
NameEY685068
Unique NameEY685068
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length997
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY685068 vs. ExPASy Swiss-Prot
Match: XPO1_RAT (Exportin-1 OS=Rattus norvegicus GN=Xpo1 PE=2 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 2.343e-56
Identity = 104/207 (50.24%), Postives = 142/207 (68.60%), Query Frame = 1
Query:    7 VRKAEDQPQIGKQFVPPMMDPVLGDYARNVPDARESEVLSLFATIINKYKGAMIDDVPRIFEAIFQCTLEMITKNFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMDSIIWAFRHTERNIAETGLNLLLEMLKNFQASEFCNQ-FYRTYFVTIEQEIFAVLTDTFHKPGFKLHVLVLQHLFCLDESGLLTEPLRDAGPIS 624
            V ++ D   + + FVPP++D VL DY RNVP ARE EVLS  A I+NK  G +  ++P+IF+A+F+CTL MI K+FE+YPEHR  FF LL+A+ +HCFPA + +   Q KLV+DSIIWAF+HT RN+A+TGL +L  +L+N    E   Q FY+TYF  I Q IF+V+TDT H  G  +H  +L ++F L E G ++ PL    P+S
Sbjct:  763 VSRSNDPQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPAQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHASILAYMFNLVEEGKISTPLNPGSPVS 969          
BLAST of EY685068 vs. ExPASy Swiss-Prot
Match: XPO1_MOUSE (Exportin-1 OS=Mus musculus GN=Xpo1 PE=1 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 5.219e-56
Identity = 103/207 (49.76%), Postives = 142/207 (68.60%), Query Frame = 1
Query:    7 VRKAEDQPQIGKQFVPPMMDPVLGDYARNVPDARESEVLSLFATIINKYKGAMIDDVPRIFEAIFQCTLEMITKNFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMDSIIWAFRHTERNIAETGLNLLLEMLKNFQASEFCNQ-FYRTYFVTIEQEIFAVLTDTFHKPGFKLHVLVLQHLFCLDESGLLTEPLRDAGPIS 624
            V ++ D   + + FVPP++D VL DY RNVP ARE EVLS  A I+NK  G +  ++P+IF+A+F+CTL MI K+FE+YPEHR  FF LL+A+ +HCFPA + +   Q KLV+DSIIWAF+HT RN+A+TGL +L  +L+N    E   Q FY+TYF  I Q IF+V+TDT H  G  +H  +L ++F L E G ++ PL    P++
Sbjct:  763 VSRSNDPQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPAQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHASILAYMFNLVEEGKISTPLNPGNPVN 969          
BLAST of EY685068 vs. ExPASy Swiss-Prot
Match: XPO1_HUMAN (Exportin-1 OS=Homo sapiens GN=XPO1 PE=1 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 3.383e-55
Identity = 103/210 (49.05%), Postives = 142/210 (67.62%), Query Frame = 1
Query:    7 VRKAEDQPQIGKQFVPPMMDPVLGDYARNVPDARESEVLSLFATIINKYKGAMIDDVPRIFEAIFQCTLEMITKNFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMDSIIWAFRHTERNIAETGLNLLLEMLKNFQASEFCNQ-FYRTYFVTIEQEIFAVLTDTFHKPGFKLHVLVLQHLFCLDESGLLTEPLRDAGPISLSI 633
            V ++ D   + + FVPP++D VL DY RNVP ARE EVLS  A I+NK  G +  ++P+IF+A+F+CTL MI K+FE+YPEHR  FF LL+A+ +HCFPA + +   Q KLV+DSIIWAF+HT RN+A+TGL +L  +L+N    E   Q FY+TYF  I Q IF+V+TDT H  G  +H  +L ++F L E G ++  L    P++  I
Sbjct:  763 VSRSNDPQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHASILAYMFNLVEEGKISTSLNPGNPVNNQI 972          
BLAST of EY685068 vs. ExPASy Swiss-Prot
Match: XPO1_SCHPO (Exportin-1 OS=Schizosaccharomyces pombe GN=xpo1 PE=1 SV=3)

HSP 1 Score: 209.534 bits (532), Expect = 2.424e-53
Identity = 103/232 (44.40%), Postives = 152/232 (65.52%), Query Frame = 1
Query:    7 VRKAEDQPQIGKQFVPPMMDPVLGDYARNVPDARESEVLSLFATIINKYKGAMIDDVPRIFEAIFQCTLEMITKNFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMDSIIWAFRHTERNIAETGLNLLLEMLKNF--QASEFCNQFYRTYFVTIEQEIFAVLTDTFHKPGFKLHVLVLQHLFCLDESGLLTEPLRDAGPISLSISKKCNEGSRMQTKDLWVLSFP 696
            + +AED   +G   +P + + VL DY +NVPDAR++EVL+L  TI+N+    + D +P + +A+F CTLEMI+K+F +YPEHR  FF LLRAI  +CFPAL+ + + Q KLV++SI+W+F+H  R+I ETGLN+LLE++ N      +  N F++TY++++ Q+I  VLTD+ HK GFKL  L+L  LF L ES  +T PL D       ++ +     R    +L V +FP
Sbjct:  764 ISRAEDLELVGNTLIPALFEAVLLDYLQNVPDARDAEVLNLITTIVNQLSELLTDKIPLVLDAVFGCTLEMISKDFSEYPEHRAAFFQLLRAINLNCFPALLNIPAPQFKLVINSIVWSFKHVSRDIQETGLNILLELINNMASMGPDVSNAFFQTYYISLLQDILYVLTDSDHKSGFKLQSLILARLFYLVESNQITVPLYDPSQFPQEMNNQL--FLRQYIMNLLVTAFP 993          
BLAST of EY685068 vs. ExPASy Swiss-Prot
Match: XPO1_DROME (Exportin-1 OS=Drosophila melanogaster GN=emb PE=1 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 2.124e-49
Identity = 95/207 (45.89%), Postives = 139/207 (67.15%), Query Frame = 1
Query:    7 VRKAEDQPQIGKQFVPPMMDPVLGDYAR-NVPDARESEVLSLFATIINKYKGAMIDDVPRIFEAIFQCTLEMITKNFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMDSIIWAFRHTERNIAETGLNLLLEMLKNF-QASEFCNQFYRTYFVTIEQEIFAVLTDTFHKPGFKLHVLVLQHLFCLDESGLLTEPLRDAGPI 621
            V ++ D   +   F+PP++D +L DY R  VP ARE +VLS  A I++K +  + ++VP+IF+A+F+CTL+MI KNFED+P+HRL F+ LL+A+  HCF A + +   Q KLV DS++WAF+HT RN+A+ GLN+L +ML+N  Q       FY+TYF  I  +IF+V+TDT H  G   H ++L ++F L E+  +T  L   GPI
Sbjct:  755 VSRSNDNQLVMDNFIPPLLDAILLDYQRCKVPSAREPKVLSAMAIIVHKLRQHITNEVPKIFDAVFECTLDMINKNFEDFPQHRLSFYELLQAVNAHCFKAFLNIPPAQFKLVFDSVVWAFKHTMRNVADMGLNILFKMLQNLDQHPGAAQSFYQTYFTDILMQIFSVVTDTSHTAGLPNHAIILAYMFSLVENRKITVNL---GPI 958          
BLAST of EY685068 vs. ExPASy Swiss-Prot
Match: XPO1_DICDI (Exportin-1 OS=Dictyostelium discoideum GN=xpo1 PE=3 SV=2)

HSP 1 Score: 195.667 bits (496), Expect = 3.623e-49
Identity = 93/202 (46.04%), Postives = 140/202 (69.31%), Query Frame = 1
Query:    7 VRKAEDQPQIGKQFVPPMMDPVLGDYARNVPDARESEVLSLFATIINKYKGAMIDDVPRIFEAIFQCTLEMITKNFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMDSIIWAFRHTERNIAETGLNLLLEMLKNF-QASEFCNQFYRTYFVTIEQEIFAVLTDTFHKPGFKLHVLVLQHLFCLDESGLLTEPLRD 609
            + K+ D+  I   F+ P+++ VLGDY  N+P+ R+ EVLSL   II   K  +  +VP+I EA+F+ TL MITKNFEDYP HR+ FF+L+RAI ++ F     L  QQ KL++D ++WAF+HTERNI+ETGL++L E+++N  + S+  N F++TY V++  +I  +LTD+FHK GF L   +L+ +F + E+G++  PL D
Sbjct:  749 IEKSSDKQVIYSNFLQPLLEAVLGDYRTNIPETRDPEVLSLMTAIITSLKQLVHPEVPKILEAVFETTLSMITKNFEDYPYHRINFFNLIRAINSNAFTVFHNLHPQQFKLLIDCVVWAFKHTERNISETGLHILKELIENVSKNSDVANVFFKTYLVSLLNDILYILTDSFHKSGFALECDILRMMFQVVENGVVKIPLFD 950          
BLAST of EY685068 vs. ExPASy Swiss-Prot
Match: XPO1_YEAST (Exportin-1 OS=Saccharomyces cerevisiae GN=CRM1 PE=1 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 3.181e-37
Identity = 77/202 (38.12%), Postives = 118/202 (58.42%), Query Frame = 1
Query:    7 VRKAEDQPQIGKQFVPPMMDPVLGDYARNVPDARESEVLSLFATIINKYKGAMIDDVPRIFEAIFQCTLEMITKNFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMDSIIWAFRHTERNIAETGLNLLLEMLKNFQAS---EFCNQFYRTYFVTIEQEIFAVLTDTFHKPGFKLHVLVLQHLFCLDESGLLTEPL 603
            + KA +   + K  V P+++ VL DY  NVPDAR++EVL+   T++ K    +   V  I +++F+CTL+MI K+F +YPEHR++F+ LL+ I    F A + L     KL +D+I WAF+H  R++   GL + L+++KN +      F N+F++ YF     E F VLTD+ HK GF    L+L  L  L     ++ PL
Sbjct:  774 ISKARNLDDVVKVLVEPLLNAVLEDYMNNVPDARDAEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFKHNNRDVEVNGLQIALDLVKNIERMGNVPFANEFHKNYFFIFVSETFFVLTDSDHKSGFSKQALLLMKLISLVYDNKISVPL 975          
The following BLAST results are available for this feature:
BLAST of EY685068 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
XPO1_RAT2.343e-5650.24Exportin-1 OS=Rattus norvegicus GN=Xpo1 PE=2 SV=1[more]
XPO1_MOUSE5.219e-5649.76Exportin-1 OS=Mus musculus GN=Xpo1 PE=1 SV=1[more]
XPO1_HUMAN3.383e-5549.05Exportin-1 OS=Homo sapiens GN=XPO1 PE=1 SV=1[more]
XPO1_SCHPO2.424e-5344.40Exportin-1 OS=Schizosaccharomyces pombe GN=xpo1 PE... [more]
XPO1_DROME2.124e-4945.89Exportin-1 OS=Drosophila melanogaster GN=emb PE=1 ... [more]
XPO1_DICDI3.623e-4946.04Exportin-1 OS=Dictyostelium discoideum GN=xpo1 PE=... [more]
XPO1_YEAST3.181e-3738.12Exportin-1 OS=Saccharomyces cerevisiae GN=CRM1 PE=... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C2-003-008-D03-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685068 ID=EY685068; Name=EY685068; organism=Citrus sinensis; type=EST; length=997bp
CCACGCGTCCGCAAGGCTGAAGATCAGCCGCAGATAGGAAAACAGTTTGT
CCCCCCAATGATGGATCCTGTCCTTGGTGACTATGCTAGGAATGTGCCTG
ATGCTAGAGAGTCAGAAGTTCTTTCACTTTTTGCCACAATCATAAACAAG
TATAAGGGTGCAATGATAGATGATGTGCCTCGCATATTTGAAGCCATTTT
CCAATGCACACTGGAGATGATAACCAAAAATTTTGAAGATTACCCAGAGC
ATCGTCTCAAATTCTTTTCTTTGCTTCGTGCCATTGCTACTCATTGTTTT
CCTGCTCTGATTCGGTTGTCAAGTCAGCAATTAAAACTAGTCATGGATTC
AATCATATGGGCCTTTCGGCATACAGAAAGGAATATTGCGGAAACTGGGC
TAAATCTTTTATTGGAGATGTTGAAAAACTTTCAGGCGTCTGAGTTCTGT
AACCAATTCTACCGGACATACTTTGTGACAATTGAGCAAGAAATATTTGC
CGTATTGACTGACACATTTCATAAACCTGGGTTCAAGTTGCACGTCCTAG
TTCTGCAGCACCTGTTTTGCCTGGATGAGAGTGGTTTATTAACAGAGCCT
TTGCGGGACGCTGGCCCAATTTCCTTATCCATATCCAAAAAATGCAATGA
AGGTTCGCGAATGCAAACAAAAGACTTATGGGTACTTTCTTTCCCCACAT
GACCGGGAGCCGAAGGTAAATCGATTTGAATACTGGGATTATGGGAATCC
GAACACGACAACCTGCGGCCGGCCAGCCCCCGGCCGCATTGGTCCCCCCA
CATCAAACAAGTGTCCAATCACCGAGATCATAACGCCAATGGCCACACGA
ACGCTGGCCTCACACGACGCAGGAACGGCCAGAGACAAAAAGTGGCAGCC
ACGACGCGGTTGCGTCCCCAATAACCAACACGAAATACACAGGGGCACGG
AAGGAGAAAGACGTACGCTCACAACAAACGCCAAAAACTGACTGAAA
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