EY685063

Overview
NameEY685063
Unique NameEY685063
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1042
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8824 contig Csv1_Contig8824:1..1042. BLAST: Citrus Unigene V1 Contigs to SwissProt
Homology
BLAST of EY685063 vs. ExPASy Swiss-Prot
Match: YVOA_BACSU (HTH-type transcriptional repressor yvoA OS=Bacillus subtilis GN=yvoA PE=4 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.601e-13
Identity = 40/103 (38.83%), Postives = 66/103 (64.08%), Query Frame = 2
Query:  386 DKQST-PLYLQLARNLEAAIHAGQWKSEQALPSERALSEQLSISRVTARKALEVLFEQGLIRRSQGSGTFIT-PRLEQPLSRLSGFSEMLRLKGFVPTAQWLE 688
            +KQS  P+Y Q+   L+  I  G+ + +  LPSER  +EQ  ISR+T R+AL  L  +GL+ R +G GTF++ P++EQ L  L+ F+E ++ +G  P ++ ++
Sbjct:    4 NKQSPIPIYYQIMEQLKTQIKNGELQPDMPLPSEREYAEQFGISRMTVRQALSNLVNEGLLYRLKGRGTFVSKPKMEQALQGLTSFTEDMKSRGMTPGSRLID 106          
BLAST of EY685063 vs. ExPASy Swiss-Prot
Match: YEGW_SHIFL (Uncharacterized HTH-type transcriptional regulator yegW OS=Shigella flexneri GN=yegW PE=4 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.601e-13
Identity = 37/101 (36.63%), Postives = 60/101 (59.41%), Query Frame = 2
Query:  395 STPLYLQLARNLEAAIHAGQWKSEQALPSERALSEQLSISRVTARKALEVLFEQGLIRRSQGSGTFITPRLEQPLSRLSGFSEMLRLKGFVPTAQWLERDI 697
            +TPLY++ A  ++ A+ +G  +    LP ER LS+   +SR+T RKA++ L E+G++ RS+G GT I    E  L    GFS+ + L+G  P   W+ + +
Sbjct:   21 NTPLYIKFAETVKNAVRSGVLEHGNILPGERDLSQLTGVSRITVRKAMQALEEEGVVTRSRGYGTQINNIFEYSLKEARGFSQQVVLRGKKPDTLWVNKRV 121          
BLAST of EY685063 vs. ExPASy Swiss-Prot
Match: YEGW_ECOLI (Uncharacterized HTH-type transcriptional regulator yegW OS=Escherichia coli (strain K12) GN=yegW PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.601e-13
Identity = 37/101 (36.63%), Postives = 60/101 (59.41%), Query Frame = 2
Query:  395 STPLYLQLARNLEAAIHAGQWKSEQALPSERALSEQLSISRVTARKALEVLFEQGLIRRSQGSGTFITPRLEQPLSRLSGFSEMLRLKGFVPTAQWLERDI 697
            +TPLY++ A  ++ A+ +G  +    LP ER LS+   +SR+T RKA++ L E+G++ RS+G GT I    E  L    GFS+ + L+G  P   W+ + +
Sbjct:   21 NTPLYIKFAETVKNAVRSGVLEHGNILPGERDLSQLTGVSRITVRKAMQALEEEGVVTRSRGYGTQINNIFEYSLKEARGFSQQVVLRGKKPDTLWVNKRV 121          
BLAST of EY685063 vs. ExPASy Swiss-Prot
Match: YEGW_ECOL6 (Uncharacterized HTH-type transcriptional regulator yegW OS=Escherichia coli O6 GN=yegW PE=4 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.601e-13
Identity = 37/101 (36.63%), Postives = 60/101 (59.41%), Query Frame = 2
Query:  395 STPLYLQLARNLEAAIHAGQWKSEQALPSERALSEQLSISRVTARKALEVLFEQGLIRRSQGSGTFITPRLEQPLSRLSGFSEMLRLKGFVPTAQWLERDI 697
            +TPLY++ A  ++ A+ +G  +    LP ER LS+   +SR+T RKA++ L E+G++ RS+G GT I    E  L    GFS+ + L+G  P   W+ + +
Sbjct:   21 NTPLYIKFAETVKNAVRSGVLEHGNILPGERDLSQLTGVSRITVRKAMQALEEEGVVTRSRGYGTQINNIFEYSLKEARGFSQQVVLRGKKPDTLWVNKRV 121          
BLAST of EY685063 vs. ExPASy Swiss-Prot
Match: YEGW_ECO57 (Uncharacterized HTH-type transcriptional regulator yegW OS=Escherichia coli O157:H7 GN=yegW PE=4 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.601e-13
Identity = 37/101 (36.63%), Postives = 60/101 (59.41%), Query Frame = 2
Query:  395 STPLYLQLARNLEAAIHAGQWKSEQALPSERALSEQLSISRVTARKALEVLFEQGLIRRSQGSGTFITPRLEQPLSRLSGFSEMLRLKGFVPTAQWLERDI 697
            +TPLY++ A  ++ A+ +G  +    LP ER LS+   +SR+T RKA++ L E+G++ RS+G GT I    E  L    GFS+ + L+G  P   W+ + +
Sbjct:   21 NTPLYIKFAETVKNAVRSGVLEHGNILPGERDLSQLTGVSRITVRKAMQALEEEGVVTRSRGYGTQINNIFEYSLKEARGFSQQVVLRGKKPDTLWVNKRV 121          
BLAST of EY685063 vs. ExPASy Swiss-Prot
Match: YURK_BACSU (Uncharacterized HTH-type transcriptional regulator yurK OS=Bacillus subtilis GN=yurK PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 5.795e-13
Identity = 41/105 (39.05%), Postives = 62/105 (59.05%), Query Frame = 2
Query:  395 STPLYLQLARNLEAAIHAGQWKSEQALPSERALSEQLSISRVTARKALEVLFEQGLIRRSQGSGTFI-TPRLEQPLSRLSGFSEMLRLKGFVPTAQWLERDITPA 706
            STPLY+QL + +   I  G +     LP+E  L  + ++SR+T RKA+  L E+G + R QG GTF+ +P+L++ L  ++G+SE +   G  P    L  DI PA
Sbjct:    7 STPLYIQLKQIITDDIKKGVYSPTAKLPTENELCTKYNVSRITVRKAILDLVEEGYLIRQQGKGTFVKSPKLKRELIAVNGYSEFMESTGKKPKHHVLSHDIIPA 111          
The following BLAST results are available for this feature:
BLAST of EY685063 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
YVOA_BACSU2.601e-1338.83HTH-type transcriptional repressor yvoA OS=Bacillu... [more]
YEGW_SHIFL2.601e-1336.63Uncharacterized HTH-type transcriptional regulator... [more]
YEGW_ECOLI2.601e-1336.63Uncharacterized HTH-type transcriptional regulator... [more]
YEGW_ECOL62.601e-1336.63Uncharacterized HTH-type transcriptional regulator... [more]
YEGW_ECO572.601e-1336.63Uncharacterized HTH-type transcriptional regulator... [more]
YURK_BACSU5.795e-1339.05Uncharacterized HTH-type transcriptional regulator... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C2-003-008-C09-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685063 ID=EY685063; Name=EY685063; organism=Citrus sinensis; type=EST; length=1042bp
TGCACCGCAGTACGGTCCGGATTCCCGGGTCGACATGCGCGAAGTCTGGA
ACCTGGTCAAGGACGGCACGATGATCGAGATTCGTCCGTAATTTTTCCGC
CGCTCGTAAAATAATTCAAAAAAAATTCCTGCCCCGCGCAGCGCTTGCCG
GTGAATACCAGTTCACCCCGGCAAGCTGCGCGCTTCTGCCCGATAGAAAG
ACCTCTCTAATACCACTTGAATTGGCGCACTATTAAGGCGCCCGTAAACA
CTTGCCTGCACCGTTTTCGCTGCATTGACATGGTATTTAAGTGGTATTAG
CTTGCGATCACTACCGGGCGACAACACTCCAATAACCGCATCGGAAACCG
ACACGATGAACCCCATCCTGGCCCTGCGCCCCGACGATAAACAATCGACG
CCGCTGTACCTGCAACTGGCCCGTAACCTTGAAGCCGCGATTCATGCCGG
CCAATGGAAATCCGAGCAGGCATTGCCGTCGGAACGCGCCCTCAGCGAGC
AACTGAGCATTTCCCGAGTGACCGCCCGCAAGGCGCTGGAAGTGCTGTTC
GAGCAAGGCCTGATCCGTCGCAGCCAAGGCTCCGGAACCTTCATCACTCC
GCGCCTGGAACAGCCGCTGTCGCGCCTCTCGGGCTTCAGCGAAATGCTCC
GGCTCAAGGGGTTTGTACCGACGGCCCAATGGCTCGAGCGCGACATCACC
CCCGCCGAACCCATGAAAACTTGATCCGCCTGGGCCTTGCGCCGAGTGAA
AAGGTCGCGCGCCTCAAGCGTTTGCGTAAAGGCCAAGACACCTGGAGGGC
ATTGGAAAGGAACGCACGGCCCGCCTCCGGCCTCCCCCAACCACAAGGGC
GTCGGAAAATTTCTTGGAACAATAGAGGGGAAAGACTAGGAAAAGGCATT
CGGGGGGGCCGAGGAAATAACTTAACGAGCATACCGCCCGTGTCGGAAAT
CTTCGAGGCCATGGGAGGGACGCTAGCACCCGGAGACGGAGCTAACGACA
GATATACAGGAGGGAGGTGAAATGAAAACGCTCAGCACAAAA
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