EY685053

Overview
NameEY685053
Unique NameEY685053
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length996
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY685053 vs. ExPASy Swiss-Prot
Match: VPS4B_MOUSE (Vacuolar protein sorting-associated protein 4B OS=Mus musculus GN=Vps4b PE=1 SV=2)

HSP 1 Score: 210.69 bits (535), Expect = 1.083e-53
Identity = 106/157 (67.52%), Postives = 127/157 (80.89%), Query Frame = 3
Query:   12 KWMGESAHLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHSLTESDFESLARKTEGFSGSDISDCVKDALFEPVRKTQDAMLF 482
            KW+GES  LV +LFQ+ARE+ PSIIFIDEIDSLCG R E NESEA+RRIKTE LVQMQGVG ++  +LVL ATN P+ LD AIRRRF+KRIYIPLP+  AR  MF++HLG T +SLTE+DF+ L RKT+G+SG+DIS  V+DAL +PVRK Q A  F
Sbjct:  207 KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSE-NESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRKVQSATHF 362          
BLAST of EY685053 vs. ExPASy Swiss-Prot
Match: VPS4B_BOVIN (Vacuolar protein sorting-associated protein 4B OS=Bos taurus GN=VPS4B PE=2 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 1.083e-53
Identity = 107/157 (68.15%), Postives = 126/157 (80.25%), Query Frame = 3
Query:   12 KWMGESAHLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHSLTESDFESLARKTEGFSGSDISDCVKDALFEPVRKTQDAMLF 482
            KW+GES  LV +LFQ+ARE+ PSIIFIDEIDSLCG R E NESEA+RRIKTE LVQMQGVG ++  +LVL ATN P+ LD AIRRRF+KRIYIPLP+  AR  MFK+HLG T +SLTE+DF  L +KTEG+SG+DIS  V+DAL +PVRK Q A  F
Sbjct:  207 KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSE-NESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFKLHLGTTQNSLTEADFRDLGKKTEGYSGADISIIVRDALMQPVRKVQSATHF 362          
BLAST of EY685053 vs. ExPASy Swiss-Prot
Match: VPS4B_HUMAN (Vacuolar protein sorting-associated protein 4B OS=Homo sapiens GN=VPS4B PE=1 SV=2)

HSP 1 Score: 209.92 bits (533), Expect = 1.848e-53
Identity = 107/157 (68.15%), Postives = 126/157 (80.25%), Query Frame = 3
Query:   12 KWMGESAHLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHSLTESDFESLARKTEGFSGSDISDCVKDALFEPVRKTQDAMLF 482
            KW+GES  LV +LFQ+ARE+ PSIIFIDEIDSLCG R E NESEA+RRIKTE LVQMQGVG ++  +LVL ATN P+ LD AIRRRF+KRIYIPLP+  AR  MFK+HLG T +SLTE+DF  L RKT+G+SG+DIS  V+DAL +PVRK Q A  F
Sbjct:  207 KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSE-NESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQSATHF 362          
BLAST of EY685053 vs. ExPASy Swiss-Prot
Match: VPS4A_RAT (Vacuolar protein sorting-associated protein 4A OS=Rattus norvegicus GN=Vps4a PE=2 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 2.413e-53
Identity = 103/157 (65.61%), Postives = 126/157 (80.25%), Query Frame = 3
Query:   12 KWMGESAHLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHSLTESDFESLARKTEGFSGSDISDCVKDALFEPVRKTQDAMLF 482
            KW+GES  LV +LF++AR+  PSIIFIDE+DSLCG R E NESEA+RRIKTE LVQMQGVG+N+   LVL ATN P+ LD AIRRRF+KRIYIPLP+  AR  MF++HLG TPH+LT+++   LARKTEG+SG+DIS  V+D+L +PVRK Q A  F
Sbjct:  200 KWLGESEKLVKNLFELARQHKPSIIFIDEVDSLCGSRNE-NESEAARRIKTEFLVQMQGVGNNNDGTLVLGATNIPWVLDSAIRRRFEKRIYIPLPEEAARAQMFRLHLGSTPHNLTDANIHELARKTEGYSGADISIIVRDSLMQPVRKVQSATHF 355          
BLAST of EY685053 vs. ExPASy Swiss-Prot
Match: VPS4A_MOUSE (Vacuolar protein sorting-associated protein 4A OS=Mus musculus GN=Vps4a PE=1 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 2.413e-53
Identity = 103/157 (65.61%), Postives = 126/157 (80.25%), Query Frame = 3
Query:   12 KWMGESAHLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHSLTESDFESLARKTEGFSGSDISDCVKDALFEPVRKTQDAMLF 482
            KW+GES  LV +LF++AR+  PSIIFIDE+DSLCG R E NESEA+RRIKTE LVQMQGVG+N+   LVL ATN P+ LD AIRRRF+KRIYIPLP+  AR  MF++HLG TPH+LT+++   LARKTEG+SG+DIS  V+D+L +PVRK Q A  F
Sbjct:  200 KWLGESEKLVKNLFELARQHKPSIIFIDEVDSLCGSRNE-NESEAARRIKTEFLVQMQGVGNNNDGTLVLGATNIPWVLDSAIRRRFEKRIYIPLPEEAARAQMFRLHLGSTPHNLTDANIHELARKTEGYSGADISIIVRDSLMQPVRKVQSATHF 355          
BLAST of EY685053 vs. ExPASy Swiss-Prot
Match: VPS4A_HUMAN (Vacuolar protein sorting-associated protein 4A OS=Homo sapiens GN=VPS4A PE=1 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 2.413e-53
Identity = 103/157 (65.61%), Postives = 126/157 (80.25%), Query Frame = 3
Query:   12 KWMGESAHLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHSLTESDFESLARKTEGFSGSDISDCVKDALFEPVRKTQDAMLF 482
            KW+GES  LV +LF++AR+  PSIIFIDE+DSLCG R E NESEA+RRIKTE LVQMQGVG+N+   LVL ATN P+ LD AIRRRF+KRIYIPLP+  AR  MF++HLG TPH+LT+++   LARKTEG+SG+DIS  V+D+L +PVRK Q A  F
Sbjct:  200 KWLGESEKLVKNLFELARQHKPSIIFIDEVDSLCGSRNE-NESEAARRIKTEFLVQMQGVGNNNDGTLVLGATNIPWVLDSAIRRRFEKRIYIPLPEEAARAQMFRLHLGSTPHNLTDANIHELARKTEGYSGADISIIVRDSLMQPVRKVQSATHF 355          
BLAST of EY685053 vs. ExPASy Swiss-Prot
Match: VPS4B_PONAB (Vacuolar protein sorting-associated protein 4B OS=Pongo abelii GN=VPS4B PE=2 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 5.376e-53
Identity = 106/157 (67.52%), Postives = 126/157 (80.25%), Query Frame = 3
Query:   12 KWMGESAHLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHSLTESDFESLARKTEGFSGSDISDCVKDALFEPVRKTQDAMLF 482
            KW+GES  LV +LFQ+ARE+ PSIIFIDEIDSLCG R E NESEA+RRIKTE LVQM+GVG ++  +LVL ATN P+ LD AIRRRF+KRIYIPLP+  AR  MFK+HLG T +SLTE+DF  L RKT+G+SG+DIS  V+DAL +PVRK Q A  F
Sbjct:  207 KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSE-NESEAARRIKTEFLVQMRGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQSATHF 362          
BLAST of EY685053 vs. ExPASy Swiss-Prot
Match: VPS4_YEAST (Vacuolar protein sorting-associated protein 4 OS=Saccharomyces cerevisiae GN=VPS4 PE=1 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.564e-52
Identity = 107/162 (66.05%), Postives = 126/162 (77.78%), Query Frame = 3
Query:   12 KWMGESAHLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHSLTESDFESLARKTEGFSGSDISDCVKDALFEPVRKTQDAMLFLTTST 497
            KWMGES  LV  LF MARE+ PSIIFIDE+D+L G RGEG ESEASRRIKTELLVQM GVG++ Q VLVL ATN P+ LD AIRRRF++RIYIPLPDL AR  MF++++GDTP  LT+ D+ +L   TEG+SGSDI+  VKDAL +P+RK Q A  F   ST
Sbjct:  205 KWMGESEKLVKQLFAMARENKPSIIFIDEVDALTGTRGEG-ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDVST 365          
BLAST of EY685053 vs. ExPASy Swiss-Prot
Match: VPS4_SCHPO (Suppressor protein of bem1/bed5 double mutants OS=Schizosaccharomyces pombe GN=vps4 PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 7.266e-50
Identity = 101/157 (64.33%), Postives = 119/157 (75.80%), Query Frame = 3
Query:   12 KWMGESAHLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHSLTESDFESLARKTEGFSGSDISDCVKDALFEPVRKTQDAMLF 482
            KWMGES  LV  LF+MARE  PSIIFIDEIDSLCG R EG ESE+SRRIKTE LVQM GVG ++  VLVL ATN P+ LD AIRRRF+KRIYIPLP+  AR  MF++++G  P  LT  DF+ LA+ T+G+SGSDIS  V+DA+ EPVR+   A  F
Sbjct:  201 KWMGESERLVRQLFEMAREQKPSIIFIDEIDSLCGSRSEG-ESESSRRIKTEFLVQMNGVGKDESGVLVLGATNIPWTLDSAIRRRFEKRIYIPLPNAHARARMFELNVGKIPSELTSQDFKELAKMTDGYSGSDISIVVRDAIMEPVRRIHTATHF 356          
BLAST of EY685053 vs. ExPASy Swiss-Prot
Match: VPS4_DICDI (Vacuolar protein sorting-associated protein 4 OS=Dictyostelium discoideum GN=vps4 PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 3.732e-46
Identity = 91/157 (57.96%), Postives = 119/157 (75.80%), Query Frame = 3
Query:   12 KWMGESAHLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHSLTESDFESLARKTEGFSGSDISDCVKDALFEPVRKTQDAMLF 482
            KW+G+S  LV  LF+MARE   S+IFIDE+DSLC  R +  ESE++RRIKTE L+QM GVG++   +LVLAATN P+ LD AIRRRF+KRIYI LP+ +AR  MF++H+G TP++L ++D++ LA  TEG+SGSDI   VKDA+ +PVR  Q A  F
Sbjct:  207 KWLGDSEKLVKQLFEMAREKNNSVIFIDEVDSLCSSRND-QESESARRIKTEFLIQMNGVGNDSDGILVLAATNIPWGLDLAIRRRFEKRIYIGLPEPQARAKMFQIHIGSTPNTLVQADYKKLADLTEGYSGSDIGSLVKDAIMQPVRAVQCATHF 362          
The following BLAST results are available for this feature:
BLAST of EY685053 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 359
Match NameE-valueIdentityDescription
VPS4B_MOUSE1.083e-5367.52Vacuolar protein sorting-associated protein 4B OS=... [more]
VPS4B_BOVIN1.083e-5368.15Vacuolar protein sorting-associated protein 4B OS=... [more]
VPS4B_HUMAN1.848e-5368.15Vacuolar protein sorting-associated protein 4B OS=... [more]
VPS4A_RAT2.413e-5365.61Vacuolar protein sorting-associated protein 4A OS=... [more]
VPS4A_MOUSE2.413e-5365.61Vacuolar protein sorting-associated protein 4A OS=... [more]
VPS4A_HUMAN2.413e-5365.61Vacuolar protein sorting-associated protein 4A OS=... [more]
VPS4B_PONAB5.376e-5367.52Vacuolar protein sorting-associated protein 4B OS=... [more]
VPS4_YEAST1.564e-5266.05Vacuolar protein sorting-associated protein 4 OS=S... [more]
VPS4_SCHPO7.266e-5064.33Suppressor protein of bem1/bed5 double mutants OS=... [more]
VPS4_DICDI3.732e-4657.96Vacuolar protein sorting-associated protein 4 OS=D... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-008-B06-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685053 ID=EY685053; Name=EY685053; organism=Citrus sinensis; type=EST; length=996bp
CCACGCGTCCGAAGTGGATGGGTGAAAGTGCCCATCTTGTCTCAAGCCTT
TTCCAGATGGCTCGTGAAAGTGCTCCTTCCATTATTTTTATTGATGAAAT
AGATTCCTTATGTGGTCAGCGTGGAGAAGGCAATGAGAGCGAAGCTTCTC
GGCGCATCAAAACTGAACTTCTTGTACAGATGCAGGGTGTTGGACACAAC
GATCAGAAAGTTCTTGTTCTTGCTGCAACAAATACTCCCTATGCTCTAGA
TCAGGCCATCCGGCGACGTTTTGACAAGCGTATATACATCCCTCTTCCAG
ATTTGAAGGCAAGACAGCACATGTTCAAGGTGCATTTAGGAGATACACCC
CACAGTTTGACTGAAAGTGATTTTGAAAGTTTAGCTCGCAAGACCGAGGG
GTTTTCTGGTTCTGATATTTCCGATTGTGTAAAGGATGCCTTGTTCGAAC
CTGTACGGAAGACTCAAGATGCCATGCTTTTTCTTACAACCTCTACTGGT
ATGACAATGCCTTGGGGCCCTAACTACCTGACCGGTCGTGTCTACCATAC
AGGCCCCAAACACGACCCGCAAACGCCAGAAAACTCCCCCCGTCCGCGTC
CATATTCCCTGAACCCTGCGGGGGCACGCGCGAGTCATAGCTCGAATGAA
GCAGCTGTTCTACACGCAGCTGGCTCCGCTAACCCACTTCCCACCCGCTA
CCCGGAACGCACGCCTAAACACACTCGAGCCTTTTAACACTCTAACCTGT
TTAGTACGCATGGCACCTCACTACAATGCCCTTCACGCCTGTTTCCCACC
TCTAGATAACCCTACTTCCTAAAGTACAGTGCTACTCTCTTCTCTTCACT
CGCTACCCAGCACACGAAGGGAATGCACCCTCGTGCATATAAACCTGCAG
CCCCAAGAAGTACAGAAGCCATAACTGACCCTGGAACAAAAACGCGAGAA
CCTCACAACTCAAGGAACAACCTCCGACCAGCAAAACACACATCAA
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