EY685049

Overview
NameEY685049
Unique NameEY685049
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length495
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12035 contig Csv1_Contig12035:67..559. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of EY685049 vs. ExPASy Swiss-Prot
Match: ATPBM_HEVBR (ATP synthase subunit beta, mitochondrial OS=Hevea brasiliensis GN=ATPB PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.504e-13
Identity = 35/36 (97.22%), Postives = 35/36 (97.22%), Query Frame = 1
Query:    1 APGKYVELKESIASFQGVLDGKYDDLPEQSFYMVGG 108
            APGKYVELKESI SFQGVLDGKYDDLPEQSFYMVGG
Sbjct:  510 APGKYVELKESITSFQGVLDGKYDDLPEQSFYMVGG 545          
BLAST of EY685049 vs. ExPASy Swiss-Prot
Match: ATPBM_MAIZE (ATP synthase subunit beta, mitochondrial OS=Zea mays GN=ATPB PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.566e-13
Identity = 34/36 (94.44%), Postives = 35/36 (97.22%), Query Frame = 1
Query:    1 APGKYVELKESIASFQGVLDGKYDDLPEQSFYMVGG 108
            APGKYVELKES+ SFQGVLDGKYDDLPEQSFYMVGG
Sbjct:  501 APGKYVELKESVKSFQGVLDGKYDDLPEQSFYMVGG 536          
BLAST of EY685049 vs. ExPASy Swiss-Prot
Match: ATPBM_ORYSJ (ATP synthase subunit beta, mitochondrial OS=Oryza sativa subsp. japonica GN=ATPB PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 3.351e-13
Identity = 34/36 (94.44%), Postives = 35/36 (97.22%), Query Frame = 1
Query:    1 APGKYVELKESIASFQGVLDGKYDDLPEQSFYMVGG 108
            APGKYVELKES+ SFQGVLDGKYDDLPEQSFYMVGG
Sbjct:  500 APGKYVELKESVNSFQGVLDGKYDDLPEQSFYMVGG 535          
BLAST of EY685049 vs. ExPASy Swiss-Prot
Match: ATPBM_ACTDE (ATP synthase subunit beta, mitochondrial (Fragment) OS=Actinidia deliciosa GN=ATPB PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 9.749e-13
Identity = 33/36 (91.67%), Postives = 35/36 (97.22%), Query Frame = 1
Query:    1 APGKYVELKESIASFQGVLDGKYDDLPEQSFYMVGG 108
            APGKYV+LKESI SFQGVLDGK+DDLPEQSFYMVGG
Sbjct:  121 APGKYVDLKESITSFQGVLDGKFDDLPEQSFYMVGG 156          
BLAST of EY685049 vs. ExPASy Swiss-Prot
Match: ATPBM_DAUCA (ATP synthase subunit beta, mitochondrial OS=Daucus carota GN=ATPB PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.663e-12
Identity = 32/36 (88.89%), Postives = 34/36 (94.44%), Query Frame = 1
Query:    1 APGKYVELKESIASFQGVLDGKYDDLPEQSFYMVGG 108
            APGKYVELKE + SFQGVLDGKYDDLPEQSFYM+GG
Sbjct:  495 APGKYVELKECVTSFQGVLDGKYDDLPEQSFYMLGG 530          
BLAST of EY685049 vs. ExPASy Swiss-Prot
Match: ATPBM_NICPL (ATP synthase subunit beta, mitochondrial OS=Nicotiana plumbaginifolia GN=ATPB PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.838e-12
Identity = 33/36 (91.67%), Postives = 34/36 (94.44%), Query Frame = 1
Query:    1 APGKYVELKESIASFQGVLDGKYDDLPEQSFYMVGG 108
            APGKYV+LKESI SFQGVLDGKYDDL EQSFYMVGG
Sbjct:  508 APGKYVDLKESINSFQGVLDGKYDDLSEQSFYMVGG 543          
BLAST of EY685049 vs. ExPASy Swiss-Prot
Match: ATPBO_ARATH (ATP synthase subunit beta-3, mitochondrial OS=Arabidopsis thaliana GN=At5g08680 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.401e-11
Identity = 31/36 (86.11%), Postives = 34/36 (94.44%), Query Frame = 1
Query:    1 APGKYVELKESIASFQGVLDGKYDDLPEQSFYMVGG 108
            APGKYV+LKE+I SFQG+LDGKYDDL EQSFYMVGG
Sbjct:  507 APGKYVDLKENINSFQGLLDGKYDDLSEQSFYMVGG 542          
BLAST of EY685049 vs. ExPASy Swiss-Prot
Match: ATPBN_ARATH (ATP synthase subunit beta-2, mitochondrial OS=Arabidopsis thaliana GN=At5g08690 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.401e-11
Identity = 31/36 (86.11%), Postives = 34/36 (94.44%), Query Frame = 1
Query:    1 APGKYVELKESIASFQGVLDGKYDDLPEQSFYMVGG 108
            APGKYV+LKE+I SFQG+LDGKYDDL EQSFYMVGG
Sbjct:  504 APGKYVDLKENINSFQGLLDGKYDDLSEQSFYMVGG 539          
BLAST of EY685049 vs. ExPASy Swiss-Prot
Match: ATPBM_ARATH (ATP synthase subunit beta-1, mitochondrial OS=Arabidopsis thaliana GN=At5g08670 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.401e-11
Identity = 31/36 (86.11%), Postives = 34/36 (94.44%), Query Frame = 1
Query:    1 APGKYVELKESIASFQGVLDGKYDDLPEQSFYMVGG 108
            APGKYV+LKE+I SFQG+LDGKYDDL EQSFYMVGG
Sbjct:  504 APGKYVDLKENINSFQGLLDGKYDDLSEQSFYMVGG 539          
The following BLAST results are available for this feature:
BLAST of EY685049 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
ATPBM_HEVBR1.504e-1397.22ATP synthase subunit beta, mitochondrial OS=Hevea ... [more]
ATPBM_MAIZE2.566e-1394.44ATP synthase subunit beta, mitochondrial OS=Zea ma... [more]
ATPBM_ORYSJ3.351e-1394.44ATP synthase subunit beta, mitochondrial OS=Oryza ... [more]
ATPBM_ACTDE9.749e-1391.67ATP synthase subunit beta, mitochondrial (Fragment... [more]
ATPBM_DAUCA1.663e-1288.89ATP synthase subunit beta, mitochondrial OS=Daucus... [more]
ATPBM_NICPL4.838e-1291.67ATP synthase subunit beta, mitochondrial OS=Nicoti... [more]
ATPBO_ARATH2.401e-1186.11ATP synthase subunit beta-3, mitochondrial OS=Arab... [more]
ATPBN_ARATH2.401e-1186.11ATP synthase subunit beta-2, mitochondrial OS=Arab... [more]
ATPBM_ARATH2.401e-1186.11ATP synthase subunit beta-1, mitochondrial OS=Arab... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C2-003-008-B02-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685049 ID=EY685049; Name=EY685049; organism=Citrus sinensis; type=EST; length=495bp
GCCCCTGGCAAGTATGTGGAGTTGAAGGAGAGCATTGCCAGTTTCCAGGG
AGTGTTGGATGGAAAATATGATGACCTTCCAGAACAGTCATTTTACATGG
TTGGAGGCATCGAGGAGGTCATTGCCAAGGCCGAGAAGATTGCCAAGGAA
TCAGCTGCCTAATCAAATCTCATGCTCGTCTCTTCCCTGTTCCTTTTCAA
TGCTTTTAGCTTGATTACTGCGAAAATCAATAATTTAGGTGGTGCTGGCC
ACGCCGGCGTCGGGATGTTCATTTTTTGAGACCAAATGTGCCAGAAGCTT
CTATTTCTGTTTTAATGTTATTGCAAAGTGTGAAATAGGAACCGAACTGG
GGCCTTTCCTGCTAAAGTCTGCTTTTTTCTTGTTATTTAATAAGGGAAAA
AAAAAAAGAATGCGGACGTGTATAATTTCTTTTTGCCATTTTTCAAAGAA
TATCAGATGGCTTTTCTTTTCATTTTAAAAAAAAAAAAAAAGGGG
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