EY685040

Overview
NameEY685040
Unique NameEY685040
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length989
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY685040 vs. ExPASy Swiss-Prot
Match: P2A03_ARATH (Putative protein PHLOEM PROTEIN 2-LIKE A3 OS=Arabidopsis thaliana GN=PP2A3 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.043e-20
Identity = 49/102 (48.04%), Postives = 66/102 (64.71%), Query Frame = 3
Query:  135 RNLVLVGRTGNGKSATANSILXXXXXXXXXXXXXVTKTCEMQRTMLTDGQVVNVIDTPGLFDSSAGSEFVSKEIVQCIGMAQEGIHGGGVILSAVNRFSQQE 440
            +N+VLVGRTGNGKS+T N++L             VT  CEM R  + DG ++NVIDTPGL DS    + +S EI+ C+ MA+EGIH   ++LSA  R S++E
Sbjct:    6 KNIVLVGRTGNGKSSTGNTLLGTKQFKSKNQAKGVTMICEMYRAAIQDGPIINVIDTPGLCDSFVPGDDISNEIINCLTMAEEGIHAVLLVLSARGRISKEE 107          
BLAST of EY685040 vs. ExPASy Swiss-Prot
Match: AIG1_ARATH (Protein AIG1 OS=Arabidopsis thaliana GN=AIG1 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 7.762e-20
Identity = 56/144 (38.89%), Postives = 76/144 (52.78%), Query Frame = 3
Query:    9 ISSPPKNLFSSPLFASKSKSFFMMGGRVIDVDWKPTSPSNGERNLVLVGRTGNGKSATANSILXXXXXXXXXXXXXVTKTCEMQRTMLTDGQVVNVIDTPGLFDSSAGSEFVSKEIVQCIGMAQEGIHGGGVILSAVNRFSQQE 440
            +++  KN  S P      K        V   D    S  +   N+VLVGRTGNGKSAT NSI+             VT  C   + +  +G ++NVIDTPGLFD S  +EF+ KEIV+C+ +A  G+H   ++LS   R SQ+E
Sbjct:    1 MANDQKNSESFPAKEDHKKDDAAAPAEVDHKDEFSASQPHPVENIVLVGRTGNGKSATGNSIVRSKVFKSKTKSSGVTMECHAVKAVTPEGPILNVIDTPGLFDLSVSAEFIGKEIVKCLTLADGGLHAVLLVLSVRTRISQEE 144          
BLAST of EY685040 vs. ExPASy Swiss-Prot
Match: GIMA4_HUMAN (GTPase IMAP family member 4 OS=Homo sapiens GN=GIMAP4 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 7.037e-13
Identity = 41/111 (36.94%), Postives = 65/111 (58.56%), Query Frame = 3
Query:  120 PSNGERNLVLVGRTGNGKSATANSILXXXXXXXXXXXXXVTKTCEMQRTMLTDGQVVNVIDTPGLFDSSAGSEFVSKEIVQCIGMAQEGIHGGGVILSAVNRFSQQEGPAT 452
            P N +  +VLVG+TG GKSAT NSIL             +TK CE + +   + ++V V+DTPG+FD+   +   SKEI++CI +   G H   +++  + R++++E  AT
Sbjct:   26 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELV-VVDTPGIFDTEVPNAETSKEIIRCILLTSPGPH-ALLLVVPLGRYTEEEHKAT 134          
The following BLAST results are available for this feature:
BLAST of EY685040 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
P2A03_ARATH2.043e-2048.04Putative protein PHLOEM PROTEIN 2-LIKE A3 OS=Arabi... [more]
AIG1_ARATH7.762e-2038.89Protein AIG1 OS=Arabidopsis thaliana GN=AIG1 PE=2 ... [more]
GIMA4_HUMAN7.037e-1336.94GTPase IMAP family member 4 OS=Homo sapiens GN=GIM... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C2-003-008-A01-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685040 ID=EY685040; Name=EY685040; organism=Citrus sinensis; type=EST; length=989bp
CCCTTTCTATCTCTTCACCCCCTAAAAATCTTTTTAGCTCTCCTCTCTTC
GCAAGTAAATCGAAATCTTTTTTTATGATGGGAGGAAGAGTGATTGATGT
CGATTGGAAGCCTACTTCTCCATCTAATGGGGAGCGCAATTTGGTTTTAG
TTGGCCGTACTGGCAATGGTAAAAGTGCGACGGCCAATAGTATTCTCGGA
AGAAGAGCCTTCAGGTCGAGGGCTGGCTCGTCTGGGGTTACTAAAACTTG
TGAAATGCAGAGAACCATGCTCACAGATGGCCAAGTTGTTAATGTCATTG
ATACCCCTGGGCTTTTTGATTCTTCGGCTGGCTCTGAGTTTGTCAGTAAG
GAAATTGTCCAATGTATTGGTATGGCCCAAGAAGGGATCCATGGGGGGGG
TGTAATTCTGTCTGCTGTAAACCGTTTTTCTCAACAGGAAGGACCTGCAA
CACCTCATTTGCAACGCCCGCCCCACCCACAACTCCATTCACCTAGTGAC
TGCCGCGCACCCCTGCACGGCGGGGACCGCACCGACGCTGCCCGGCGCAT
CCGCCCACCCATCCGCGCCCGACGTGGACCTCGCCTCCTCAGCACGATCA
TCAAACCTACCCACAGCCGAACCCCCAGCTTGCCTCCCCCCCACACTACC
GAGACGACGCCGCAGACACTAACCGACCCCGCCAACGAACCACCTAAGTA
CCCCACCAACCAACGCCGACAACGACCCCGGCGAGCAAAAGATAAAGCGC
GACCCGGACCCGCCCGAAGCCACTCACACACCTCCTTCACGCCCCGGGCA
AGAGTCACACCACGACCAGAGAAGCAACGCACAAGGATACCATCAGCCAG
AGCATGCAGCGCCCGCCACGACATACGCCAGACGAACCCACGGAGACTCA
AACGCCACGACCCACTGCACAGCCGTGAGTGAGCCGACCATGGAGGAGAG
AGCAAAAAGCAAGATGAGAGGGCGGGGCAGGGGGCGGGG
back to top