EY685039
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY685039 vs. ExPASy Swiss-Prot
Match: TOP1_ARATH (DNA topoisomerase 1 OS=Arabidopsis thaliana GN=TOP1 PE=1 SV=1) HSP 1 Score: 329.331 bits (843), Expect = 2.051e-89 Identity = 165/209 (78.95%), Postives = 187/209 (89.47%), Query Frame = 1 Query: 1 QNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVDPEFRF 627 + DDLFD+LDT+KLNAHLKEL+PGLTAKVFRTYNASITLD ML++ T DGDV KI VYQ+ANKEVAIICNHQRTVSKTH AQ+ +LT +IE+LK VLK+L+ +LDRAKKGKPPL + SDGK+ R+L P A E+K+AQ +AKIEKMERDM TKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIF KSLL KFAWAMDV+PE+RF Sbjct: 706 KTDDLFDELDTSKLNAHLKELVPGLTAKVFRTYNASITLDEMLSQETKDGDVTQKIVVYQKANKEVAIICNHQRTVSKTHGAQIEKLTARIEELKEVLKELKTNLDRAKKGKPPL-EGSDGKKIRSLEPNAWEKKIAQQSAKIEKMERDMHTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFTKSLLEKFAWAMDVEPEYRF 913
BLAST of EY685039 vs. ExPASy Swiss-Prot
Match: TOP1_DAUCA (DNA topoisomerase 1 OS=Daucus carota GN=TOP1 PE=2 SV=1) HSP 1 Score: 305.834 bits (782), Expect = 2.428e-82 Identity = 166/234 (70.94%), Postives = 184/234 (78.63%), Query Frame = 1 Query: 7 DDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGM-----LNKGTGDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPE----------------------ALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVDPEFRF 627 DDLFD+LDT+KLNAHLKELMPGLTAKVFRTYNASITLD M L++ T GDVA K+ VYQ ANKEVAIICNHQRTVSK+HSAQM RL EKIE+LKG+LK+L+ DL R KGKPPL K+SDGK KRNL + ++ +K+AQTN KIEKMERD +TKEDLKTVALGTSKINYLDPRITVAWCKRH+VPIEKIFNKSLLAKFAWAMDV FRF Sbjct: 558 DDLFDQLDTSKLNAHLKELMPGLTAKVFRTYNASITLDEMVRCKLLSRETKGGDVAEKVVVYQHANKEVAIICNHQRTVSKSHSAQMVRLNEKIEELKGLLKELQEDLTRVNKGKPPL-KNSDGKPKRNLNLKRYKGKLLKLIQKLRKWSETRRLSVTKKIAQTNTKIEKMERDKETKEDLKTVALGTSKINYLDPRITVAWCKRHDVPIEKIFNKSLLAKFAWAMDVVLIFRF 790
BLAST of EY685039 vs. ExPASy Swiss-Prot
Match: TOP1_RAT (DNA topoisomerase 1 OS=Rattus norvegicus GN=Top1 PE=2 SV=1) HSP 1 Score: 185.652 bits (470), Expect = 3.662e-46 Identity = 107/209 (51.20%), Postives = 135/209 (64.59%), Query Frame = 1 Query: 7 DDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDV-DPEFRF 627 DDLFD+L+T LN HL++LM GLTAKVFRTYNASITL L + T D +V KI Y RAN+ VAI+CNHQR KT M L KI+ K L D R DL AK +MKD+ K+ +A++R Q + K+E +E+ K +ALGTSK+NYLDPRITVAWCK+ VPIEKI+NK+ KFAWA+D+ D ++ F Sbjct: 564 DDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENVPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQSKIDAKKDQLADARKDLKSAK-ADAKVMKDAKTKKVVESKKKAVQRLEEQ----LMKLEVQATDREENKQIALGTSKLNYLDPRITVAWCKKWGVPIEKIYNKTQREKFAWAIDMTDEDYEF 767
BLAST of EY685039 vs. ExPASy Swiss-Prot
Match: TOP1_MOUSE (DNA topoisomerase 1 OS=Mus musculus GN=Top1 PE=1 SV=2) HSP 1 Score: 185.267 bits (469), Expect = 4.782e-46 Identity = 107/209 (51.20%), Postives = 135/209 (64.59%), Query Frame = 1 Query: 7 DDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDV-DPEFRF 627 DDLFD+L+T LN HL++LM GLTAKVFRTYNASITL L + T D +V KI Y RAN+ VAI+CNHQR KT M L KI+ K L D R DL AK +MKD+ K+ +A++R Q + K+E +E+ K +ALGTSK+NYLDPRITVAWCK+ VPIEKI+NK+ KFAWA+D+ D ++ F Sbjct: 564 DDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENVPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQSKIDAKKDQLADARRDLKSAK-ADAKVMKDAKTKKVVESKKKAVQRLEEQ----LMKLEVQATDREENKQIALGTSKLNYLDPRITVAWCKKWGVPIEKIYNKTQREKFAWAIDMTDEDYEF 767
BLAST of EY685039 vs. ExPASy Swiss-Prot
Match: TOP1_CRIGR (DNA topoisomerase 1 OS=Cricetulus griseus GN=TOP1 PE=2 SV=1) HSP 1 Score: 185.267 bits (469), Expect = 4.782e-46 Identity = 107/209 (51.20%), Postives = 135/209 (64.59%), Query Frame = 1 Query: 7 DDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDV-DPEFRF 627 DDLFD+L+T LN HL++LM GLTAKVFRTYNASITL L + T D +V KI Y RAN+ VAI+CNHQR KT M L KI+ K L D R DL AK +MKD+ K+ +A++R Q + K+E +E+ K +ALGTSK+NYLDPRITVAWCK+ VPIEKI+NK+ KFAWA+D+ D ++ F Sbjct: 564 DDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENVPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQSKIDAKKDQLADARRDLKSAK-ADAKVMKDAKTKKVVESKKKAVQRLEEQ----LMKLEVQATDREENKQIALGTSKLNYLDPRITVAWCKKWGVPIEKIYNKTQREKFAWAIDMTDEDYEF 767
BLAST of EY685039 vs. ExPASy Swiss-Prot
Match: TOP1_CERAE (DNA topoisomerase 1 OS=Cercopithecus aethiops GN=TOP1 PE=2 SV=1) HSP 1 Score: 184.496 bits (467), Expect = 8.158e-46 Identity = 106/209 (50.72%), Postives = 135/209 (64.59%), Query Frame = 1 Query: 7 DDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDV-DPEFRF 627 DDLFD+L+T LN HL++LM GLTAKVFRTYNASITL L + T D ++ KI Y RAN+ VAI+CNHQR KT M L KI+ K L D R DL AK +MKD+ K+ +A++R Q + K+E +E+ K +ALGTSK+NYLDPRITVAWCK+ VPIEKI+NK+ KFAWA+D+ D ++ F Sbjct: 564 DDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQSKIDAKKEQLADARRDLKSAK-ADAKVMKDAKTKKVVESKKKAVQRLEEQ----LMKLEVQATDREENKQIALGTSKLNYLDPRITVAWCKKWGVPIEKIYNKTQREKFAWAIDMADEDYEF 767
BLAST of EY685039 vs. ExPASy Swiss-Prot
Match: TOP1_HUMAN (DNA topoisomerase 1 OS=Homo sapiens GN=TOP1 PE=1 SV=2) HSP 1 Score: 184.111 bits (466), Expect = 1.065e-45 Identity = 106/209 (50.72%), Postives = 135/209 (64.59%), Query Frame = 1 Query: 7 DDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDV-DPEFRF 627 DDLFD+L+T LN HL++LM GLTAKVFRTYNASITL L + T D ++ KI Y RAN+ VAI+CNHQR KT M L KI+ K L D R DL AK +MKD+ K+ +A++R Q + K+E +E+ K +ALGTSK+NYLDPRITVAWCK+ VPIEKI+NK+ KFAWA+D+ D ++ F Sbjct: 562 DDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQTKIDAKKEQLADARRDLKSAK-ADAKVMKDAKTKKVVESKKKAVQRLEEQ----LMKLEVQATDREENKQIALGTSKLNYLDPRITVAWCKKWGVPIEKIYNKTQREKFAWAIDMADEDYEF 765
BLAST of EY685039 vs. ExPASy Swiss-Prot
Match: TOP1_CAEEL (DNA topoisomerase 1 OS=Caenorhabditis elegans GN=top-1 PE=2 SV=1) HSP 1 Score: 181.8 bits (460), Expect = 5.288e-45 Identity = 101/213 (47.42%), Postives = 132/213 (61.97%), Query Frame = 1 Query: 4 NDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGD-VAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDV----DPEFRF 627 +DDLFD+LDTA LN HL+ LM GLT KVFRTYNASITL L K T D VA KI Y RAN++VAI+CNHQR VSK M +L +KI+D K +K+ L K R E ++K + +++K++ K++ K +ALGTSK+NY+DPRITVAWCK+ EVP+EK+F K+ KF WA+D+ D E+ F Sbjct: 610 SDDLFDRLDTATLNDHLRSLMDGLTVKVFRTYNASITLQEQLIKLTNPKDNVAAKILSYNRANRQVAILCNHQRAVSKGFDESMQKLEQKIKDKKKEVKEAEAAL----------------KSARGAEKEKAQKKYDRLKEQLKKLKISRTDKDENKQIALGTSKLNYIDPRITVAWCKKFEVPLEKVFTKTHREKFRWAIDMTNSSDEEYVF 806
BLAST of EY685039 vs. ExPASy Swiss-Prot
Match: TOP1_DROME (DNA topoisomerase 1 OS=Drosophila melanogaster GN=Top1 PE=1 SV=1) HSP 1 Score: 173.711 bits (439), Expect = 1.440e-42 Identity = 101/213 (47.42%), Postives = 130/213 (61.03%), Query Frame = 1 Query: 1 QNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRA--KKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDV-DPEFRF 627 + DDLFD+L+T LN HLKELM GLTAKVFRTYNAS TL L+ T V K+ Y RAN+ VAI+CNHQR+V K+H M L EKI+ + ++ + KKGK LER Q ++K+E +++ KT+ALGTSK+NYLDPRI+VAWCK+H+VPIEKIFNK+ KF WA+ + D +RF Sbjct: 782 EGDDLFDRLNTQVLNEHLKELMEGLTAKVFRTYNASKTLQSQLDLLTDPSATVPEKLLAYNRANRAVAILCNHQRSVPKSHEKSMENLKEKIKAKREAIEKCESEYHSRDEKKGKQ------------------LERLRDQ----LKKLELQETDRDENKTIALGTSKLNYLDPRISVAWCKKHDVPIEKIFNKTQRTKFLWAVHMADENYRF 972
BLAST of EY685039 vs. ExPASy Swiss-Prot
Match: TOP1M_MOUSE (DNA topoisomerase I, mitochondrial OS=Mus musculus GN=Top1mt PE=2 SV=1) HSP 1 Score: 172.17 bits (435), Expect = 4.190e-42 Identity = 93/201 (46.27%), Postives = 127/201 (63.18%), Query Frame = 1 Query: 7 DDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMD 606 DDLFD L T+ LN HL++LM GLTAKVFRTYNAS+TL L T + V K+ Y RAN+ VA++CNHQR V KT M L +KIE K + + +V+L +A+ L D K K L + R++ + ++ ++ KE+ K VALGT+K+NYLDPRI++AWCKR VP+EKI+NK+ +FAWA + Sbjct: 391 DDLFDALTTSSLNKHLQDLMEGLTAKVFRTYNASVTLQEQLRVLTRAEDSVTCKVLAYNRANRAVAVLCNHQRAVPKTFEKSMQTLQKKIETKKAQVAEAQVELQKAETD---LRMRGDSKPKSFLQKQ---RRLLKLEEQLARLCAKATDKEENKQVALGTAKLNYLDPRISIAWCKRFGVPVEKIYNKTQRERFAWAFN 585 The following BLAST results are available for this feature:
BLAST of EY685039 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 18
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >EY685039 ID=EY685039; Name=EY685039; organism=Citrus sinensis; type=EST; length=983bpback to top |