EY685009

Overview
NameEY685009
Unique NameEY685009
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length947
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY685009 vs. ExPASy Swiss-Prot
Match: PPOC_TOBAC (Protoporphyrinogen oxidase, chloroplastic OS=Nicotiana tabacum GN=PPXI PE=2 SV=1)

HSP 1 Score: 268.47 bits (685), Expect = 1.593e-77
Identity = 130/156 (83.33%), Postives = 143/156 (91.67%), Query Frame = 2
Query:   95 GHEESVEEFVRRNLGDEVFERLIEPFCSGVYAGDPSKLSMKAAFGNVWKLEQTGGSIIGGTFKAIQEKNKAPKQPRDPRLPKPKGQTVGSFRKGLTMLPEAISKRLGSKVKLSWKLSGVKKLDNGEYSLTYETPEGLVSLRSRSVVMTVPSYVASS 562
            GHEESVE+FVRRNLG EVFERLIEPFCSGVYAGDPSKLSMKAAFG VWKLE+TGGSIIGGTFKAI+E++  PK PRDPRLPKPKGQTVGSFRKGL MLP+AIS RLGSK+KLSWKLS + K + G Y LTYETPEG+VSL+SRS+VMTVPSYVAS+
Sbjct:  200 GHEESVEQFVRRNLGGEVFERLIEPFCSGVYAGDPSKLSMKAAFGKVWKLEETGGSIIGGTFKAIKERSSTPKAPRDPRLPKPKGQTVGSFRKGLRMLPDAISARLGSKLKLSWKLSSITKSEKGGYHLTYETPEGVVSLQSRSIVMTVPSYVASN 355          

HSP 2 Score: 43.5134 bits (101), Expect = 1.593e-77
Identity = 29/61 (47.54%), Postives = 34/61 (55.74%), Query Frame = 3
Query:  570 RPLSVDAAGALSQFYYPPVAGGWSGFLSKRRNSDRVALLDGEFKRVWAICFRGTQGVENFG 752
            RPLSV AA ALS FYYPPV      +  +    +R  L+DGE K    +  R TQGVE  G
Sbjct:  358 RPLSVAAADALSNFYYPPVGAVTITYPQEAIRDER--LVDGELKGFGQLHPR-TQGVETLG 415          
BLAST of EY685009 vs. ExPASy Swiss-Prot
Match: PPOC_ARATH (Protoporphyrinogen oxidase, chloroplastic OS=Arabidopsis thaliana GN=PPOX PE=2 SV=1)

HSP 1 Score: 276.174 bits (705), Expect = 1.942e-73
Identity = 150/234 (64.10%), Postives = 167/234 (71.37%), Query Frame = 2
Query:   95 GHEESVEEFVRRNLGDEVFERLIEPFCSGVYAGDPSKLSMKAAFGNVWKLEQTGGSIIGGTFKAIQEKNKAPKQPRDPRLPKPKGQTVGSFRKGLTMLPEAISKRLGSKVKLSWKLSGVKKLDNGEYSLTYETPEGLVSLRSRSVVMTVPSYVASSXXXXXXXXXXXXXXXXXXPPSCWRVVWFLIQKKKFGQSCFVRW*I*KGLGHLLPRD---PRGGKLWEQFLAPSFFPPG 787
            G EESVEEFVRRNLGDEVFERLIEPFCSGVYAGDPSKLSMKAAFG VWKLEQ GGSIIGGTFKAIQE+  APK  RDPRLPKP+GQTVGSFRKGL MLPEAIS RLGSKVKLSWKLSG+ KL++G Y+LTYETP+GLVS++S+SVVMTVPS+VAS                   PP     V     K+     C +   + KG G L PR       G ++   L P+  PPG
Sbjct:  189 GREESVEEFVRRNLGDEVFERLIEPFCSGVYAGDPSKLSMKAAFGKVWKLEQNGGSIIGGTFKAIQERKNAPKAERDPRLPKPQGQTVGSFRKGLRMLPEAISARLGSKVKLSWKLSGITKLESGGYNLTYETPDGLVSVQSKSVVMTVPSHVASGLLRPLSESAANALSKLYYPPVA--AVSISYPKEAIRTECLIDGEL-KGFGQLHPRTQGVETLGTIYSSSLFPNRAPPG 419          
BLAST of EY685009 vs. ExPASy Swiss-Prot
Match: PPOC_ORYSJ (Protoporphyrinogen oxidase, chloroplastic OS=Oryza sativa subsp. japonica GN=PPOX1 PE=2 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 2.080e-67
Identity = 137/236 (58.05%), Postives = 161/236 (68.22%), Query Frame = 2
Query:   95 GHEESVEEFVRRNLGDEVFERLIEPFCSGVYAGDPSKLSMKAAFGNVWKLEQTGGSIIGGTFKAIQEKNKAPKQPRDPRLPKPKGQTVGSFRKGLTMLPEAISKRLGSKVKLSWKLSGVKKLDNGEYSLTYETPEGLVSLRSRSVVMTVPSYVASSXXXXXXXXXXXXXXXXXXPPSCWRVVWFLIQKKKFGQSCFVRW*I*KGLGHLLPRDPRGGKLWEQFLAPSFFPPGPPLSK 802
            G EESVE+FVRRNLG EVFERLIEPFCSGVYAGDPSKLSMKAAFG VW+LE TGGSIIGGT K IQE+ K PK PRDPRLP PKGQTV SFRKGLTMLP+AI+ RLGSKVKLSWKL+ + K DN  Y+L YETPEG+VS+++++VVMT+PSYVAS                   PP     V     K+   + C +   + +G G L PR  +G +      + S FP   P  +
Sbjct:  188 GREESVEDFVRRNLGAEVFERLIEPFCSGVYAGDPSKLSMKAAFGKVWRLEDTGGSIIGGTIKTIQERGKNPKPPRDPRLPTPKGQTVASFRKGLTMLPDAITSRLGSKVKLSWKLTSITKSDNKGYALVYETPEGVVSVQAKTVVMTIPSYVASDILRPLSSDAADALSIFYYPPVA--AVTVSYPKEAIRKECLIDGEL-QGFGQLHPRS-QGVETLGTIYSSSLFPNRAPAGR 419          
BLAST of EY685009 vs. ExPASy Swiss-Prot
Match: PPOCM_SPIOL (Protoporphyrinogen oxidase, chloroplastic/mitochondrial OS=Spinacia oleracea GN=POX2 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.464e-12
Identity = 50/149 (33.56%), Postives = 73/149 (48.99%), Query Frame = 2
Query:  101 EESVEEFVRRNLGDEVFERLIEPFCSGVYAGDPSKLSMKAAFGNVWKLEQTGGSIIGGTFKAIQEKNKAPKQPRDPRLPKPKGQTVGSFRKGLTMLPEAISKRLG-SKVKLSWKLSGVKKLDNGEYSLTYETPEGLVSLRSRSVVMTVP 544
            +ESV EF  R+ G E  + LI+PF +G   GDP  LSM+ AF  +W +E   GS+I G  ++     K     +     KP+ +   SF+ G+  L + I K  G  ++KL  ++  +    NG  SLT E     VS  S S +   P
Sbjct:  180 QESVAEFFERHFGKEFVDYLIDPFVAGTSGGDPQSLSMRHAFPELWNIENRFGSVISGFIQSKLSSKKEKGGEKQSSNKKPRVRGSFSFQGGMQTLVDTICKEFGEDELKLQSEVLSLSYSHNG--SLTSE--NWSVSSMSNSTIQDQP 324          
BLAST of EY685009 vs. ExPASy Swiss-Prot
Match: PPOX_BACSU (Protoporphyrinogen oxidase OS=Bacillus subtilis GN=hemY PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.912e-12
Identity = 55/153 (35.95%), Postives = 79/153 (51.63%), Query Frame = 2
Query:  101 EESVEEFVRRNLGDEVFERLIEPFCSGVYAGDPSKLSMKAAFGNVWKLEQTGGSIIGGTFKAIQEKNKAPKQPRDPRLPKPKGQTVGSFRKGLTMLPEAISKRLGSKVKLSWKLSGVKKLDNGEYSLTYETPEGLVSLRSRSVVMTVPSYVAS 559
            ++S+ EF RR +GDEV E LIEP  SG+YAGD  KLS+ + F   ++ EQ   S+I G       K   P+        K +GQ   +   GL  L E I K+L  K+   +K + V KL +     + E   G V+L + SV++T P   A+
Sbjct:  149 DQSLGEFFRRRVGDEVVENLIEPLLSGIYAGDIDKLSLMSTFPQFYQTEQKHRSLILGM------KKTRPQGSGQQLTAKKQGQ-FQTLSTGLQTLVEEIEKQL--KLTKVYKGTKVTKLSHSGSCYSLELDNG-VTLDADSVIVTAPHKAAA 291          
BLAST of EY685009 vs. ExPASy Swiss-Prot
Match: PPOM_TOBAC (Protoporphyrinogen oxidase, mitochondrial OS=Nicotiana tabacum GN=PPXII PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.034e-11
Identity = 52/158 (32.91%), Postives = 80/158 (50.63%), Query Frame = 2
Query:  104 ESVEEFVRRNLGDEVFERLIEPFCSGVYAGDPSKLSMKAAFGNVWKLEQTGGSIIGGTFKA-IQEKNKAPKQPRDPRLPKPKGQTVGSFRKGLTMLPEAISK-------RLGSKV-KLSWKLSGVKKLDNGEYSLTYETPEGLVSLRSR--SVVMTVP 544
            ESV  F +R+ G EV + LI+PF +G   GDP  LSM  +F  +W LE+  GS+I G  ++ +  KN+  + P      K + +   SF  G+  L +AI K       RL S+V +LS   +    +D+  +S+   +P    S      +V+MT P
Sbjct:  150 ESVSGFFQRHFGKEVVDYLIDPFVAGTCGGDPDSLSMHHSFPELWNLEKRFGSVILGAIRSKLSPKNEKKQGPPKTSANKKRQRGSFSFLGGMQTLTDAICKDLREDELRLNSRVLELSCSCTEDSAIDS--WSIISASPHKRQSEEESFDAVIMTAP 305          
The following BLAST results are available for this feature:
BLAST of EY685009 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PPOC_TOBAC1.593e-7783.33Protoporphyrinogen oxidase, chloroplastic OS=Nicot... [more]
PPOC_ARATH1.942e-7364.10Protoporphyrinogen oxidase, chloroplastic OS=Arabi... [more]
PPOC_ORYSJ2.080e-6758.05Protoporphyrinogen oxidase, chloroplastic OS=Oryza... [more]
PPOCM_SPIOL1.464e-1233.56Protoporphyrinogen oxidase, chloroplastic/mitochon... [more]
PPOX_BACSU1.912e-1235.95Protoporphyrinogen oxidase OS=Bacillus subtilis GN... [more]
PPOM_TOBAC8.034e-1132.91Protoporphyrinogen oxidase, mitochondrial OS=Nicot... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C2-003-007-E06-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685009 ID=EY685009; Name=EY685009; organism=Citrus sinensis; type=EST; length=947bp
CGGACGCGTGGGTATATTTATCACAAGGCCATACACCCTTTTCATGTTTT
CATCAATTGTTTTTCTCTACTATAGACTTTGACAAAGGTGACAGGGTCAC
GAGGAATCAGTTGAGGAGTTTGTGCGGCGTAACCTTGGTGATGAGGTTTT
CGAGCGTCTAATTGAGCCATTTTGTTCAGGGGTTTATGCAGGAGATCCTT
CAAAACTAAGCATGAAAGCAGCATTTGGAAACGTTTGGAAACTGGAGCAG
ACTGGTGGCAGTATCATTGGTGGAACTTTTAAGGCAATCCAGGAAAAAAA
TAAAGCTCCTAAGCAACCTCGAGACCCGCGTCTACCAAAGCCAAAGGGCC
AAACAGTTGGATCTTTTAGGAAGGGACTTACTATGCTGCCAGAGGCAATA
TCTAAAAGGTTAGGTAGCAAAGTCAAATTATCTTGGAAGCTTTCAGGGGT
CAAGAAATTGGATAACGGAGAGTATAGTTTGACTTATGAAACACCAGAAG
GATTGGTTTCTCTGCGGAGCAGAAGTGTTGTTATGACAGTTCCATCTTAT
GTCGCTAGTAGTCTACTAACGTCCACTTTCTGTAGATGCTGCCGGTGCAC
TCTCACAATTTTACTACCCCCCAGTTGCTGGCGGGTGGTCTGGTTTCTTA
TCCAAAAGAAGAAATTCGGACAGAGTTGCTTTGTTAGATGGTGAATTTAA
AAGGGTTTGGGCCATTTGCTTCCGCGGGACCCAAGGGGTGGAAAACTTTG
GGAACAATTTTTAGCTCCTTCATTTTTTCCCCCCGGACCACCCCTTTCCA
AGGGTTTTTTCTTTTGCCTTCCGTTTCCACCTCTTTACTGTTTTTCAATT
TTTGCCAGCAAGGGACCGGACACTTTACTAAAACGAATCACCCGAACACT
ACGAACCGTGGGTTTCTACTTACCAGTGGCTTTAAGATGTCCGTGCT
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