EY684997

Overview
NameEY684997
Unique NameEY684997
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length869
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684997 vs. ExPASy Swiss-Prot
Match: UBC4_ARATH (Ubiquitin-conjugating enzyme E2 4 OS=Arabidopsis thaliana GN=UBC4 PE=2 SV=2)

HSP 1 Score: 209.149 bits (531), Expect = 2.559e-53
Identity = 96/132 (72.73%), Postives = 113/132 (85.61%), Query Frame = 3
Query:  207 MSSPSKRRDMDVMKLMMSDYNVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQSWSPMFDLLNIFESFXXXXXXXXXXXXXXXGDAASLMIKDR 602
            MSSPSKRR+MD+MKLMMSDY VETINDG+ EF VEF+GPK+SLY+GGVWKIRVELPDAYPYKSPS+GF+ KIYHPNVDE+SGSVCLDVINQ+WSPMFDL+N+FE+F               G+AA+LM++DR
Sbjct:    1 MSSPSKRREMDMMKLMMSDYKVETINDGMQEFYVEFNGPKDSLYQGGVWKIRVELPDAYPYKSPSVGFITKIYHPNVDELSGSVCLDVINQTWSPMFDLVNVFETFLPQLLLYPNPSDPLNGEAAALMMRDR 132          
BLAST of EY684997 vs. ExPASy Swiss-Prot
Match: UBC5_ARATH (Ubiquitin-conjugating enzyme E2 5 OS=Arabidopsis thaliana GN=UBC5 PE=2 SV=2)

HSP 1 Score: 207.223 bits (526), Expect = 9.723e-53
Identity = 96/132 (72.73%), Postives = 111/132 (84.09%), Query Frame = 3
Query:  207 MSSPSKRRDMDVMKLMMSDYNVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQSWSPMFDLLNIFESFXXXXXXXXXXXXXXXGDAASLMIKDR 602
            MSSPSKRR+MD+MKLMMSDY VE INDG+ EF VEF GPK+S+YEGGVWKIRVELPDAYPYKSPS+GF+ KIYHPNVDEMSGSVCLDVINQ+WSPMFDL+N+FE+F               G+AA+LM++DR
Sbjct:    1 MSSPSKRREMDLMKLMMSDYKVEMINDGMQEFFVEFSGPKDSIYEGGVWKIRVELPDAYPYKSPSVGFITKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFETFLPQLLLYPNPSDPLNGEAAALMMRDR 132          
BLAST of EY684997 vs. ExPASy Swiss-Prot
Match: UBC4_WHEAT (Ubiquitin-conjugating enzyme E2-23 kDa OS=Triticum aestivum GN=UBC4 PE=1 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 2.395e-51
Identity = 94/132 (71.21%), Postives = 110/132 (83.33%), Query Frame = 3
Query:  207 MSSPSKRRDMDVMKLMMSDYNVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQSWSPMFDLLNIFESFXXXXXXXXXXXXXXXGDAASLMIKDR 602
            MSSPSKRR+MD+MKLMMSDY V+ INDG++EF V FHGPK+S+Y+GGVWK+RVEL +AYPYKSPSIGF NKIYHPNVDEMSGSVCLDVINQ+WSPMFDL+NIFE F               G+AASLM++D+
Sbjct:    1 MSSPSKRREMDLMKLMMSDYKVDMINDGMHEFFVHFHGPKDSIYQGGVWKVRVELTEAYPYKSPSIGFTNKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNIFEVFLPQLLLYPNPSDPLNGEAASLMMRDK 132          
BLAST of EY684997 vs. ExPASy Swiss-Prot
Match: UBC6_ARATH (Ubiquitin-conjugating enzyme E2 6 OS=Arabidopsis thaliana GN=UBC6 PE=2 SV=2)

HSP 1 Score: 199.134 bits (505), Expect = 2.648e-50
Identity = 91/132 (68.94%), Postives = 109/132 (82.58%), Query Frame = 3
Query:  207 MSSPSKRRDMDVMKLMMSDYNVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQSWSPMFDLLNIFESFXXXXXXXXXXXXXXXGDAASLMIKDR 602
            M+SPSKRR+MD+MKLMMSDY V+T+ND L  F V FHGP +SLY+GGVWKI+VELP+AYPYKSPS+GFVNKIYHPNVDE SG+VCLDVINQ+WSPMFDL+N+FESF               G+AASL+++DR
Sbjct:    1 MASPSKRREMDMMKLMMSDYKVDTVNDDLQMFYVTFHGPTDSLYQGGVWKIKVELPEAYPYKSPSVGFVNKIYHPNVDESSGAVCLDVINQTWSPMFDLINVFESFLPQLLLYPNPSDPFNGEAASLLMRDR 132          
BLAST of EY684997 vs. ExPASy Swiss-Prot
Match: UBC8_SCHPO (Ubiquitin-conjugating enzyme E2 8 OS=Schizosaccharomyces pombe GN=ubc8 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 6.984e-43
Identity = 77/131 (58.78%), Postives = 99/131 (75.57%), Query Frame = 3
Query:  207 MSSPSKRRDMDVMKLMMSDYNVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQSWSPMFDLLNIFESFXXXXXXXXXXXXXXXGDAASLMIKD 599
            MSSP +R + DVMKL+MSDY V  +ND + EF V FHGP E+ Y GG+WK+ VELP  YP+KSPSIGFVN+I+HPN+DE+SGSVCLDVINQ+WSPMFD++NIFE F               G+AA+L++++
Sbjct:    1 MSSPRRRIETDVMKLLMSDYEVTLVNDNMQEFYVRFHGPSETPYSGGIWKVHVELPSEYPWKSPSIGFVNRIFHPNIDELSGSVCLDVINQTWSPMFDMINIFEVFLPQLLRYPNASDPLNGEAAALLLRE 131          
BLAST of EY684997 vs. ExPASy Swiss-Prot
Match: UBC8_YEAST (Ubiquitin-conjugating enzyme E2-24 kDa OS=Saccharomyces cerevisiae GN=UBC8 PE=1 SV=2)

HSP 1 Score: 160.614 bits (405), Expect = 1.044e-38
Identity = 73/133 (54.89%), Postives = 97/133 (72.93%), Query Frame = 3
Query:  207 MSSPSKRRDMDVMKLMMSDYNVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQSWSPMFDLLNIFESFXXXXXXXXXXXXXXXGDAASLMIKDRK 605
            MSS  +R + DVMKL+MSD+ V+ IND + EF+V+F GPK++ YE GVW++ VELPD YPYKSPSIGFVNKI+HPN+D  SGS+CLDVIN +WSP++DL+NI E                  +AA+L ++D+K
Sbjct:    1 MSSSKRRIETDVMKLLMSDHQVDLINDSMQEFHVKFLGPKDTPYENGVWRLHVELPDNYPYKSPSIGFVNKIFHPNIDIASGSICLDVINSTWSPLYDLINIVEWMIPGLLKEPNGSDPLNNEAATLQLRDKK 133          
BLAST of EY684997 vs. ExPASy Swiss-Prot
Match: UBE2H_MOUSE (Ubiquitin-conjugating enzyme E2 H OS=Mus musculus GN=Ube2h PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 9.768e-37
Identity = 76/132 (57.58%), Postives = 98/132 (74.24%), Query Frame = 3
Query:  207 MSSPS---KRRDMDVMKLMMSDYNVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQSWSPMFDLLNIFESFXXXXXXXXXXXXXXXGDAASLMI 593
            MSSPS   +R D DV+KL+ S + V TI  GLNEF V+F+GP+ + YEGGVWK+RV+LPD YP+KSPSIGF+NKI+HPN+DE SG+VCLDVINQ+W+ ++DL NIFESF               GDAA++ +
Sbjct:    1 MSSPSPGKRRMDTDVVKLIESKHEV-TILGGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYL 131          
BLAST of EY684997 vs. ExPASy Swiss-Prot
Match: UBE2H_HUMAN (Ubiquitin-conjugating enzyme E2 H OS=Homo sapiens GN=UBE2H PE=1 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 9.768e-37
Identity = 76/132 (57.58%), Postives = 98/132 (74.24%), Query Frame = 3
Query:  207 MSSPS---KRRDMDVMKLMMSDYNVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQSWSPMFDLLNIFESFXXXXXXXXXXXXXXXGDAASLMI 593
            MSSPS   +R D DV+KL+ S + V TI  GLNEF V+F+GP+ + YEGGVWK+RV+LPD YP+KSPSIGF+NKI+HPN+DE SG+VCLDVINQ+W+ ++DL NIFESF               GDAA++ +
Sbjct:    1 MSSPSPGKRRMDTDVVKLIESKHEV-TILGGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYL 131          
BLAST of EY684997 vs. ExPASy Swiss-Prot
Match: UBE2H_BOVIN (Ubiquitin-conjugating enzyme E2 H OS=Bos taurus GN=UBE2H PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 9.768e-37
Identity = 76/132 (57.58%), Postives = 98/132 (74.24%), Query Frame = 3
Query:  207 MSSPS---KRRDMDVMKLMMSDYNVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQSWSPMFDLLNIFESFXXXXXXXXXXXXXXXGDAASLMI 593
            MSSPS   +R D DV+KL+ S + V TI  GLNEF V+F+GP+ + YEGGVWK+RV+LPD YP+KSPSIGF+NKI+HPN+DE SG+VCLDVINQ+W+ ++DL NIFESF               GDAA++ +
Sbjct:    1 MSSPSPGKRRMDTDVVKLIESKHEV-TILGGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYL 131          
BLAST of EY684997 vs. ExPASy Swiss-Prot
Match: UBC1_SCHPO (Ubiquitin-conjugating enzyme E2 1 OS=Schizosaccharomyces pombe GN=ubc1 PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 9.505e-16
Identity = 34/89 (38.20%), Postives = 55/89 (61.80%), Query Frame = 3
Query:  237 DVMKLMMSDYNVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQSWSPMFDL 503
            DV +   +   V TIND ++     F GP+ + YEGG + + +E+P  YP++ P + F  KIYHPNV   +G++CLD++   WSP++ +
Sbjct:   15 DVQQDKQAGIQVWTINDDISHLKGMFRGPEGTPYEGGYFVVDIEIPIDYPFRPPKMNFDTKIYHPNVSSQTGAICLDILKDQWSPVYTM 103          
The following BLAST results are available for this feature:
BLAST of EY684997 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
UBC4_ARATH2.559e-5372.73Ubiquitin-conjugating enzyme E2 4 OS=Arabidopsis t... [more]
UBC5_ARATH9.723e-5372.73Ubiquitin-conjugating enzyme E2 5 OS=Arabidopsis t... [more]
UBC4_WHEAT2.395e-5171.21Ubiquitin-conjugating enzyme E2-23 kDa OS=Triticum... [more]
UBC6_ARATH2.648e-5068.94Ubiquitin-conjugating enzyme E2 6 OS=Arabidopsis t... [more]
UBC8_SCHPO6.984e-4358.78Ubiquitin-conjugating enzyme E2 8 OS=Schizosacchar... [more]
UBC8_YEAST1.044e-3854.89Ubiquitin-conjugating enzyme E2-24 kDa OS=Saccharo... [more]
UBE2H_MOUSE9.768e-3757.58Ubiquitin-conjugating enzyme E2 H OS=Mus musculus ... [more]
UBE2H_HUMAN9.768e-3757.58Ubiquitin-conjugating enzyme E2 H OS=Homo sapiens ... [more]
UBE2H_BOVIN9.768e-3757.58Ubiquitin-conjugating enzyme E2 H OS=Bos taurus GN... [more]
UBC1_SCHPO9.505e-1638.20Ubiquitin-conjugating enzyme E2 1 OS=Schizosacchar... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-007-D05-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684997 ID=EY684997; Name=EY684997; organism=Citrus sinensis; type=EST; length=869bp
AGAAACTCTTTCCTTGACTCAACTCACGAATAGGGTTATTCATTTTCTGG
GAATCTGGATAAGCTTCTACTTGTCACCTGTTCCTTGTTTGAGCATTGGA
CAAAAGTCTGAGGTTTCTGATTCTGTGATATTTGTTTTACTGTCTCATTT
TGCTCGGAGCTTGTGTATCTCTGTTTGGCTGTGATTTAAATTGCATAAAG
ATCAAAATGTCTTCTCCAAGCAAGAGAAGGGATATGGATGTCATGAAGCT
GATGATGAGTGATTACAATGTGGAGACAATAAATGATGGACTGAATGAAT
TTAATGTGGAATTCCATGGTCCAAAAGAAAGCCTTTATGAAGGTGGGGTT
TGGAAAATTCGTGTTGAGCTTCCTGATGCTTATCCATACAAGTCTCCTTC
CATTGGGTTTGTGAACAAGATATACCACCCTAATGTAGATGAAATGTCTG
GTTCTGTATGCTTGGATGTTATTAACCAATCCTGGAGCCCGATGTTTGAT
CTATTAAACATTTTTGAATCTTTTCTTCCTCAACTCCTTCTTTATCCCAA
TCCTTCAAACCCCCTTTATGGTGATGCAGCTTCACTGATGATCAAGGACC
GAAAACCATTATGACCCAAAAGTGAAAAAAGTATTGGTCAAGATCTTCCC
AACAAAAAACTTTTGGTAATTCCCAGGCTTGTGAGGAACATGGACATAAA
GAAATCAATAGAAAAAAAAAGCAATCTACTGATATAACCTTGCTGGCATT
CAAGACCCTTATAAACTTTGCGGGTTTTGGCCCATGTAATAGAAGACATT
AATAAACGGAAACATCGGACTGAACAACGCAATAAAACAACGCCGACCTT
TTTTAGTAAGGACGAACAC
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