EY684993

Overview
NameEY684993
Unique NameEY684993
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length898
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684993 vs. ExPASy Swiss-Prot
Match: YUSP_BACSU (Uncharacterized MFS-type transporter yusP OS=Bacillus subtilis GN=yusP PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.551e-16
Identity = 42/97 (43.30%), Postives = 52/97 (53.61%), Query Frame = -2
Query:   16 FTLTSLLCAMAWNIQSMIAFRALQGFLGGWMIPLVFTTAFMYFNGKQRVIAASTIGAIASLAPTLGPAVGGWITDISSWHWLFYINLVPGLFVTFAV 306
            F   S LC MA N+  +I FR LQG  GG M+P+        F GKQR       GAI  LA  +GP +GGWI D  +W W+FYINL  G+     +
Sbjct:   88 FMAASALCGMANNMTELIIFRGLQGIGGGIMMPMAMIVIGDLFTGKQRAKFQGVFGAIYGLASVIGPQIGGWIVDSLNWKWVFYINLPVGIIAVIFI 184          
BLAST of EY684993 vs. ExPASy Swiss-Prot
Match: BMR3_BACSU (Multidrug resistance protein 3 OS=Bacillus subtilis GN=bmr3 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.112e-14
Identity = 39/97 (40.21%), Postives = 56/97 (57.73%), Query Frame = -2
Query:   16 FTLTSLLCAMAWNIQSMIAFRALQGFLGGWMIPLVFTTAFMYFNGKQRVIAASTIGAIASLAPTLGPAVGGWITDISSWHWLFYINLVPGLFVTFAV 306
            F + S LC +A  +  +I FRA+QG  GG ++P+ FT  F  F  ++R   +   GA+  L+  LGP +G  ITD  SWHW+FYIN+  G    F +
Sbjct:   87 FLIGSALCGIAQTMNQLIIFRAIQGIGGGALLPIAFTIIFDLFPPEKRGKMSGMFGAVFGLSSVLGPLLGAIITDSISWHWVFYINVPIGALSLFFI 183          
BLAST of EY684993 vs. ExPASy Swiss-Prot
Match: MDTD_ECO81 (Putative multidrug resistance protein mdtD OS=Escherichia coli O81 (strain ED1a) GN=mdtD PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.100e-13
Identity = 37/106 (34.91%), Postives = 58/106 (54.72%), Query Frame = -2
Query:    4 SAAARFTLTSLLCAMAWNIQSMIAFRALQGFLGGWMIPLVFTTAFMYFNGKQRVIAASTIGAIASLAPTLGPAVGGWITDISSWHWLFYINLVPGLFVTFAVPMLV 321
            +A   FTL SL CA++  +  ++  RALQG  G  M+P+   T       +Q + A + +     + P LGPA+GG + + +SWHW+F IN+  G+    A  ML+
Sbjct:   80 TAIVLFTLGSLFCALSGTLNELLLARALQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQIGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLM 185          
BLAST of EY684993 vs. ExPASy Swiss-Prot
Match: MDTD_SHIFL (Putative multidrug resistance protein mdtD OS=Shigella flexneri GN=mdtD PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.967e-13
Identity = 37/106 (34.91%), Postives = 58/106 (54.72%), Query Frame = -2
Query:    4 SAAARFTLTSLLCAMAWNIQSMIAFRALQGFLGGWMIPLVFTTAFMYFNGKQRVIAASTIGAIASLAPTLGPAVGGWITDISSWHWLFYINLVPGLFVTFAVPMLV 321
            +A   FTL SL CA++  +  ++  RALQG  G  M+P+   T       +Q + A + +     + P LGPA+GG + + +SWHW+F IN+  G+    A  ML+
Sbjct:   80 TAIVLFTLGSLFCALSGTLNELLLARALQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLM 185          
BLAST of EY684993 vs. ExPASy Swiss-Prot
Match: MDTD_SHIF8 (Putative multidrug resistance protein mdtD OS=Shigella flexneri serotype 5b (strain 8401) GN=mdtD PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 7.967e-13
Identity = 37/106 (34.91%), Postives = 58/106 (54.72%), Query Frame = -2
Query:    4 SAAARFTLTSLLCAMAWNIQSMIAFRALQGFLGGWMIPLVFTTAFMYFNGKQRVIAASTIGAIASLAPTLGPAVGGWITDISSWHWLFYINLVPGLFVTFAVPMLV 321
            +A   FTL SL CA++  +  ++  RALQG  G  M+P+   T       +Q + A + +     + P LGPA+GG + + +SWHW+F IN+  G+    A  ML+
Sbjct:   80 TAIVLFTLGSLFCALSGTLNELLLARALQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLM 185          
BLAST of EY684993 vs. ExPASy Swiss-Prot
Match: MDTD_ECOUT (Putative multidrug resistance protein mdtD OS=Escherichia coli (strain UTI89 / UPEC) GN=mdtD PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.967e-13
Identity = 37/106 (34.91%), Postives = 58/106 (54.72%), Query Frame = -2
Query:    4 SAAARFTLTSLLCAMAWNIQSMIAFRALQGFLGGWMIPLVFTTAFMYFNGKQRVIAASTIGAIASLAPTLGPAVGGWITDISSWHWLFYINLVPGLFVTFAVPMLV 321
            +A   FTL SL CA++  +  ++  RALQG  G  M+P+   T       +Q + A + +     + P LGPA+GG + + +SWHW+F IN+  G+    A  ML+
Sbjct:   80 TAIVLFTLGSLFCALSGTLNELLLARALQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLM 185          
BLAST of EY684993 vs. ExPASy Swiss-Prot
Match: MDTD_ECOSM (Putative multidrug resistance protein mdtD OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=mdtD PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.967e-13
Identity = 37/106 (34.91%), Postives = 58/106 (54.72%), Query Frame = -2
Query:    4 SAAARFTLTSLLCAMAWNIQSMIAFRALQGFLGGWMIPLVFTTAFMYFNGKQRVIAASTIGAIASLAPTLGPAVGGWITDISSWHWLFYINLVPGLFVTFAVPMLV 321
            +A   FTL SL CA++  +  ++  RALQG  G  M+P+   T       +Q + A + +     + P LGPA+GG + + +SWHW+F IN+  G+    A  ML+
Sbjct:   80 TAIVLFTLGSLFCALSGTLNELLLARALQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLM 185          
BLAST of EY684993 vs. ExPASy Swiss-Prot
Match: MDTD_ECOSE (Putative multidrug resistance protein mdtD OS=Escherichia coli (strain SE11) GN=mdtD PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.967e-13
Identity = 37/106 (34.91%), Postives = 58/106 (54.72%), Query Frame = -2
Query:    4 SAAARFTLTSLLCAMAWNIQSMIAFRALQGFLGGWMIPLVFTTAFMYFNGKQRVIAASTIGAIASLAPTLGPAVGGWITDISSWHWLFYINLVPGLFVTFAVPMLV 321
            +A   FTL SL CA++  +  ++  RALQG  G  M+P+   T       +Q + A + +     + P LGPA+GG + + +SWHW+F IN+  G+    A  ML+
Sbjct:   80 TAIVLFTLGSLFCALSGTLNELLLARALQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLM 185          
BLAST of EY684993 vs. ExPASy Swiss-Prot
Match: MDTD_ECOLU (Putative multidrug resistance protein mdtD OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=mdtD PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.967e-13
Identity = 37/106 (34.91%), Postives = 58/106 (54.72%), Query Frame = -2
Query:    4 SAAARFTLTSLLCAMAWNIQSMIAFRALQGFLGGWMIPLVFTTAFMYFNGKQRVIAASTIGAIASLAPTLGPAVGGWITDISSWHWLFYINLVPGLFVTFAVPMLV 321
            +A   FTL SL CA++  +  ++  RALQG  G  M+P+   T       +Q + A + +     + P LGPA+GG + + +SWHW+F IN+  G+    A  ML+
Sbjct:   80 TAIVLFTLGSLFCALSGTLNELLLARALQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLM 185          
BLAST of EY684993 vs. ExPASy Swiss-Prot
Match: MDTD_ECOL5 (Putative multidrug resistance protein mdtD OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=mdtD PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.967e-13
Identity = 37/106 (34.91%), Postives = 58/106 (54.72%), Query Frame = -2
Query:    4 SAAARFTLTSLLCAMAWNIQSMIAFRALQGFLGGWMIPLVFTTAFMYFNGKQRVIAASTIGAIASLAPTLGPAVGGWITDISSWHWLFYINLVPGLFVTFAVPMLV 321
            +A   FTL SL CA++  +  ++  RALQG  G  M+P+   T       +Q + A + +     + P LGPA+GG + + +SWHW+F IN+  G+    A  ML+
Sbjct:   80 TAIVLFTLGSLFCALSGTLNELLLARALQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLM 185          
The following BLAST results are available for this feature:
BLAST of EY684993 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
YUSP_BACSU1.551e-1643.30Uncharacterized MFS-type transporter yusP OS=Bacil... [more]
BMR3_BACSU1.112e-1440.21Multidrug resistance protein 3 OS=Bacillus subtili... [more]
MDTD_ECO816.100e-1334.91Putative multidrug resistance protein mdtD OS=Esch... [more]
MDTD_SHIFL7.967e-1334.91Putative multidrug resistance protein mdtD OS=Shig... [more]
MDTD_SHIF87.967e-1334.91Putative multidrug resistance protein mdtD OS=Shig... [more]
MDTD_ECOUT7.967e-1334.91Putative multidrug resistance protein mdtD OS=Esch... [more]
MDTD_ECOSM7.967e-1334.91Putative multidrug resistance protein mdtD OS=Esch... [more]
MDTD_ECOSE7.967e-1334.91Putative multidrug resistance protein mdtD OS=Esch... [more]
MDTD_ECOLU7.967e-1334.91Putative multidrug resistance protein mdtD OS=Esch... [more]
MDTD_ECOL57.967e-1334.91Putative multidrug resistance protein mdtD OS=Esch... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-007-D01-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684993 ID=EY684993; Name=EY684993; organism=Citrus sinensis; type=EST; length=898bp
CTTGACCAGCATCGGCACCGCAAAGGTCACGAACAGGCCGGGCACCAGGT
TGATGTAGAACAGCCAGTGCCAGGAAGAAATATCGGTGATCCAGCCGCCC
ACGGCCGGGCCCAATGTGGGCGCAAGGGATGCAATGGCGCCGATGGTGGA
GGCCGCGATCACCCGTTGCTTGCCGTTGAAGTACATGAACGCGGTGGTGA
ACACCAACGGGATCATCCAGCCCCCCAGAAACCCCTGCAACGCGCGAAAC
GCGATCATGCTCTGGATGTTCCANGCCATCGCACACAAAAGGCTGGTCAA
GGTAAAACGCGCCGCTGCAGACCGCCAAGAGACGTCGCCGAGAGCCTAAA
CCACACATGTCTTGATGCCATCGCGCACCCCCCACCCCCCCAACACACCA
CACACCCACCTGCGGGGGGGGCCCCACACCCCCCACGGGAAAGCGACGGC
ACGCGGCCGGCCCCGGACAACCGAACAGCCGCCCGCAACCCCGCGGGCGC
GCCGCGCACGGGCTCCCCAGAGCCGGGGGCCGCCCCGAAAGCAGGAGCAG
CAAAACGCACGACGGACAAGGCCCCCCACAACAGACAAACACAACGAAAA
AGCCCCACACGACGCGAACGCCCCCCGCGACAACACCCGACCAACCGAGA
CCGCGAGAGCACAAAACAGCAAACACAAACGGAGCAGAACAGGCACCCAC
CAACAACCACCACCGAAACACGACAAAGCGCACACGCCACACCCAAACGC
CACGGCAAGTAAGCGAAGACGCACTGACGCGACGCGAGAACACCCCGCGG
AGGACGAGAGGCGGAGCCGGCACCACGAGCGACACGCAGCGCGGGGAGGC
AGGGGCCGGACGACGCAGGCCGACACGCCGGAAGCAGACAGAGAAGGC
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