EY684991

Overview
NameEY684991
Unique NameEY684991
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1013
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY684991_ssr851 microsatellite EY684991_ssr851:851..860. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY684991 vs. ExPASy Swiss-Prot
Match: PSAD_CUCSA (Photosystem I reaction center subunit II, chloroplastic OS=Cucumis sativus GN=psaD PE=1 SV=1)

HSP 1 Score: 300.827 bits (769), Expect = 8.110e-81
Identity = 147/167 (88.02%), Postives = 153/167 (91.62%), Query Frame = 1
Query:    7 APRTNTIKAMAEGKTETPTKEAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYRSIGKNVSPIEVKFTGKQVYDL 507
            A  + + K  AE +T     EAP GF+PPELDP+TPSPIF GSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQN+RSIGKNVSPIEVKFTGKQVYDL
Sbjct:   44 ASSSRSFKVSAEAETSV---EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNFRSIGKNVSPIEVKFTGKQVYDL 207          
BLAST of EY684991 vs. ExPASy Swiss-Prot
Match: PSAD_SPIOL (Photosystem I reaction center subunit II, chloroplastic OS=Spinacia oleracea GN=psaD PE=1 SV=2)

HSP 1 Score: 299.671 bits (766), Expect = 1.807e-80
Identity = 151/171 (88.30%), Postives = 156/171 (91.23%), Query Frame = 1
Query:    7 APRTNTIKAMA--EGKTE--TPTKEAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYRSIGKNVSPIEVKFTGKQVYDL 507
            A R ++I+A A  EGK    T TKEAP GFTPPELDPNTPSPIF GSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFP+GEVQYLHPKDGVYPEKVNPGR+GVG N RSIGKNVSPIEVKFTGKQ YDL
Sbjct:   42 ASRHHSIRAAAAAEGKAAAATETKEAPKGFTPPELDPNTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPSGEVQYLHPKDGVYPEKVNPGRQGVGLNMRSIGKNVSPIEVKFTGKQPYDL 212          
BLAST of EY684991 vs. ExPASy Swiss-Prot
Match: PSAD_SOLLC (Photosystem I reaction center subunit II, chloroplastic OS=Solanum lycopersicum GN=psaD PE=2 SV=1)

HSP 1 Score: 298.901 bits (764), Expect = 3.082e-80
Identity = 146/165 (88.48%), Postives = 151/165 (91.52%), Query Frame = 1
Query:   16 TNTIKAMAE-GKTETPTKEAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYRSIGKNVSPIEVKFTGKQVYDL 507
            T  I+AMAE     T  K AP GFTPP+LDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR+GPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQN+RSIGKN S IEVKFTGKQVYD+
Sbjct:   44 TRPIRAMAEEAPAATEEKPAPAGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQGPNLLKLARKEQCLALGTRLRSKYKINYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNFRSIGKNKSAIEVKFTGKQVYDI 208          
BLAST of EY684991 vs. ExPASy Swiss-Prot
Match: PSAD_NICSY (Photosystem I reaction center subunit II, chloroplastic OS=Nicotiana sylvestris GN=psaD PE=2 SV=1)

HSP 1 Score: 296.975 bits (759), Expect = 1.171e-79
Identity = 148/168 (88.10%), Postives = 155/168 (92.26%), Query Frame = 1
Query:    4 NAPRTNTIKAMAEGKTETPTKEAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYRSIGKNVSPIEVKFTGKQVYDL 507
            +APR   I+AMAE +  T   EAPVGFTPP+LDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREG NLLKLARKEQCLALGTRLRSKYKI Y+FYRVFPNGEVQYLHPKDGVYPEKVN GR+GVGQN+RSIGKN SPIEVKFTGKQVYDL
Sbjct:   40 SAPRP--IRAMAE-EAATKEAEAPVGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGANLLKLARKEQCLALGTRLRSKYKINYRFYRVFPNGEVQYLHPKDGVYPEKVNAGRQGVGQNFRSIGKNKSPIEVKFTGKQVYDL 204          
BLAST of EY684991 vs. ExPASy Swiss-Prot
Match: PSAD1_ARATH (Photosystem I reaction center subunit II-1, chloroplastic OS=Arabidopsis thaliana GN=psaD1 PE=1 SV=1)

HSP 1 Score: 293.508 bits (750), Expect = 1.295e-78
Identity = 144/167 (86.23%), Postives = 146/167 (87.43%), Query Frame = 1
Query:    7 APRTNTIKAMAEGKTETPTKEAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYRSIGKNVSPIEVKFTGKQVYDL 507
            A R     + A       TKEAPVGFTPP+LDPNTPSPIF GSTGGLLRKAQVEEFYVITW SPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEK NPGREGVG N RSIGKNVSPIEVKFTGKQ YDL
Sbjct:   42 AIRAEKTDSSAAAAAAPATKEAPVGFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWNSPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKITYQFYRVFPNGEVQYLHPKDGVYPEKANPGREGVGLNMRSIGKNVSPIEVKFTGKQSYDL 208          
BLAST of EY684991 vs. ExPASy Swiss-Prot
Match: PSAD2_ARATH (Photosystem I reaction center subunit II-2, chloroplastic OS=Arabidopsis thaliana GN=psaD2 PE=1 SV=1)

HSP 1 Score: 291.582 bits (745), Expect = 4.920e-78
Identity = 145/167 (86.83%), Postives = 149/167 (89.22%), Query Frame = 1
Query:   22 TIKAMAEGKTETPT-----KEAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYRSIGKNVSPIEVKFTGKQVYDL 507
            T  A+   KTE+ +     KEAPVGFTPP+LDPNTPSPIF GSTGGLLRKAQVEEFYVITW SPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEK NPGREGVG N RSIGKNVSPIEVKFTGKQ YDL
Sbjct:   38 TKTAIRAEKTESSSAAPAVKEAPVGFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWNSPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKITYQFYRVFPNGEVQYLHPKDGVYPEKANPGREGVGLNMRSIGKNVSPIEVKFTGKQSYDL 204          
BLAST of EY684991 vs. ExPASy Swiss-Prot
Match: PSAD_HORVU (Photosystem I reaction center subunit II, chloroplastic OS=Hordeum vulgare GN=psaD PE=1 SV=1)

HSP 1 Score: 281.182 bits (718), Expect = 6.650e-75
Identity = 132/150 (88.00%), Postives = 140/150 (93.33%), Query Frame = 1
Query:   58 PTKEAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYRSIGKNVSPIEVKFTGKQVYDL 507
            P + AP GF PP+LDP+TPSPIFGGSTGGLLRKAQVEEFYVITW SPKEQ+FEMPTGGAAIMREGPNLLKLARKEQCLALG RLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEKVN GR+GVGQN+RSIGKNVSPIEVKFTGK  +D+
Sbjct:   56 PAEPAPAGFVPPQLDPSTPSPIFGGSTGGLLRKAQVEEFYVITWTSPKEQVFEMPTGGAAIMREGPNLLKLARKEQCLALGNRLRSKYKIAYQFYRVFPNGEVQYLHPKDGVYPEKVNAGRQGVGQNFRSIGKNVSPIEVKFTGKNSFDI 205          
BLAST of EY684991 vs. ExPASy Swiss-Prot
Match: PSAD_CHLRE (Photosystem I reaction center subunit II, chloroplastic OS=Chlamydomonas reinhardtii GN=psaD PE=1 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 3.666e-57
Identity = 110/165 (66.67%), Postives = 130/165 (78.79%), Query Frame = 1
Query:    7 APRTNTIKAMAEGKTETPTKEAPV-GFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYRSIGKNVSPIEVKFTGKQV 498
            A R   ++A AE       K A    +T P L+P+TPSPIFGGSTGGLLRKAQ EEFYVITWE+ KEQIFEMPTGGAAIMR+GPNLLK  +KEQCLAL T+LR+K+K+   FYRVFP+G+VQYLHP DGVYPEKVN GR G  QN R IG+NV+PI+VKF+G+ +
Sbjct:   27 ARRAVVVRAEAEAAPAAAKKAAEKPAWTVPTLNPDTPSPIFGGSTGGLLRKAQTEEFYVITWEAKKEQIFEMPTGGAAIMRQGPNLLKFGKKEQCLALTTQLRNKFKLTPCFYRVFPDGKVQYLHPADGVYPEKVNAGRVGANQNMRRIGQNVNPIKVKFSGRMM 191          
BLAST of EY684991 vs. ExPASy Swiss-Prot
Match: PSAD_CYAPA (Photosystem I reaction center subunit II, cyanelle OS=Cyanophora paradoxa GN=psaD PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 3.006e-51
Identity = 95/146 (65.07%), Postives = 117/146 (80.14%), Query Frame = 1
Query:   70 APVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKI-KYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYRSIGKNVSPIEVKFTGKQVYD 504
            AP  F+ P L+ N P+PIFGGSTGGLLRKA+VEEFY ITW    E +FE+PTGGAAIMR G NLL+LARKEQC+ALG +L+ K+KI  Y+ YRV+P+GEVQ+LHPKDGV+PEKVNPGR  VG N R IG+N  P ++KF G++ +D
Sbjct:   70 APKPFSVPTLNLNAPTPIFGGSTGGLLRKAEVEEFYSITWTGKSETVFELPTGGAAIMRAGENLLRLARKEQCIALGAQLKDKFKITDYKIYRVYPSGEVQFLHPKDGVFPEKVNPGRVAVGSNKRRIGQNPDPAKLKFKGQETFD 215          
BLAST of EY684991 vs. ExPASy Swiss-Prot
Match: PSAD_GUITH (Photosystem I reaction center subunit II OS=Guillardia theta GN=psaD PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 2.382e-48
Identity = 93/137 (67.88%), Postives = 110/137 (80.29%), Query Frame = 1
Query:   97 LDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKI-KYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYRSIGKNVSPIEVKFTGKQVYD 504
            L+   PSP F GSTGG LR A+ EE Y ITW SPKEQ+FEMPTGGAAIMR+G NLL LARKEQCLALGT++++ +KI  Y+ YR+FP+GEVQYLHPKDGV+PEKVNPGR GVG    SIGKN++P ++KFT K   D
Sbjct:    5 LNLQIPSPTFEGSTGGWLRAAETEEKYAITWTSPKEQVFEMPTGGAAIMRKGENLLYLARKEQCLALGTQVKTSFKITDYKIYRIFPSGEVQYLHPKDGVFPEKVNPGRIGVGNVSHSIGKNLNPAQIKFTNKSFCD 141          
The following BLAST results are available for this feature:
BLAST of EY684991 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
PSAD_CUCSA8.110e-8188.02Photosystem I reaction center subunit II, chloropl... [more]
PSAD_SPIOL1.807e-8088.30Photosystem I reaction center subunit II, chloropl... [more]
PSAD_SOLLC3.082e-8088.48Photosystem I reaction center subunit II, chloropl... [more]
PSAD_NICSY1.171e-7988.10Photosystem I reaction center subunit II, chloropl... [more]
PSAD1_ARATH1.295e-7886.23Photosystem I reaction center subunit II-1, chloro... [more]
PSAD2_ARATH4.920e-7886.83Photosystem I reaction center subunit II-2, chloro... [more]
PSAD_HORVU6.650e-7588.00Photosystem I reaction center subunit II, chloropl... [more]
PSAD_CHLRE3.666e-5766.67Photosystem I reaction center subunit II, chloropl... [more]
PSAD_CYAPA3.006e-5165.07Photosystem I reaction center subunit II, cyanelle... [more]
PSAD_GUITH2.382e-4867.88Photosystem I reaction center subunit II OS=Guilla... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-007-C10-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684991 ID=EY684991; Name=EY684991; organism=Citrus sinensis; type=EST; length=1013bp
CATAATGCCCCACGTACCAACACCATCAAGGCCATGGCTGAGGGAAAAAC
AGAGACACCCACAAAAGAGGCTCCGGTGGGCTTCACCCCACCAGAACTGG
ACCCCAACACCCCATCTCCGATCTTCGGAGGCAGCACCGGCGGGCTGCTG
CGGAAGGCTCAGGTGGAAGAGTTTTATGTGATCACATGGGAGTCTCCTAA
GGAGCAAATATTTGAAATGCCCACTGGGGGTGCGGCCATTATGAGAGAAG
GTCCGAATTTGCTGAAGCTGGCTAGGAAAGAGCAGTGCTTGGCTCTGGGG
ACAAGGCTGAGGTCCAAGTACAAGATTAAGTACCAGTTTTACCGAGTGTT
TCCCAATGGAGAGGTTCAGTATTTGCATCCCAAGGATGGTGTTTATCCTG
AGAAAGTGAACCCTGGAAGGGAAGGAGTTGGGCAGAATTACAGGTCTATT
GGTAAGAATGTGAGTCCTATTGAGGTCAAGTTTACAGGGAAGCAAGTGTA
TGATCTGTAAATTTAAATTGTAAGCTGCTAAGCTGACCGGGCCCTCGGAA
TGATCTGGTGATTAATTGTTGTGATCATTTACTTGTTTCTATTCGCGTTT
TCTTTTTCTTAACATAATTGATGAAAGCCACACTTTGATCGCTGAAACTA
TTTTATAGACGGCAATCTCCCCTTTATGCTTAAGAACAGAATTGGCATTC
TGACACAGGCAAAACAGACCTCACACGCCTGCCGATTCGGCTCACTACCT
CTTCCACACGGTGGGCGAAACGCACACAAAAGCGGCACAAGACCAAAAAC
AGACCCGCGGAACGGAATTCTGGCAGAGACGAGAGATGGAGAGAGGGGGC
GAGAGAGAGAAGCCGGACGCCTCAAGACGGCGAGAGACGACGCAGGACAC
GACAGGACGAAGGGCGAAGCAATACACAAGACCCGAAAGAGACACACAAA
AAAAAACCGAAAACAAGAGATGGAGGAAGCCGTCATAACCACGAGCGCCA
CCGCCAACACGCG
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