EY684978

Overview
NameEY684978
Unique NameEY684978
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1050
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY684978_ssr947 microsatellite EY684978_ssr947:947..958. BLAST: Citrus ESTs to Prunus persica proteins V1
EY684978_ssr1031 microsatellite EY684978_ssr1031:1031..1042. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12104 contig Csv1_Contig12104:493..1542. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY684978 vs. ExPASy Swiss-Prot
Match: ILVB1_TOBAC (Acetolactate synthase 1, chloroplastic OS=Nicotiana tabacum GN=ALS SURA PE=1 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 1.332e-49
Identity = 96/130 (73.85%), Postives = 110/130 (84.62%), Query Frame = 3
Query:    6 MLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFDFSTWREELDEHEVKYPLSFTTFEQSIPPPTAVRALPISTRG 395
            MLGMHGTVYANYAVD SDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVS+CAD+KLAL+G+N IL  K+ + + DFS WR+EL E +VK+PL+F TF  +IPP  A++ L   T G
Sbjct:  345 MLGMHGTVYANYAVDSSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSICADIKLALQGLNSILESKEGKLKLDFSAWRQELTEQKVKHPLNFKTFGDAIPPQYAIQVLDELTNG 474          
BLAST of EY684978 vs. ExPASy Swiss-Prot
Match: ILVB2_TOBAC (Acetolactate synthase 2, chloroplastic OS=Nicotiana tabacum GN=ALS SURB PE=1 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 2.272e-49
Identity = 96/130 (73.85%), Postives = 109/130 (83.85%), Query Frame = 3
Query:    6 MLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFDFSTWREELDEHEVKYPLSFTTFEQSIPPPTAVRALPISTRG 395
            MLGMHGTVYANYAVD SDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVS+CAD+KLAL+G+N IL  K+ + + DFS WR+EL   +VKYPL+F TF  +IPP  A++ L   T G
Sbjct:  342 MLGMHGTVYANYAVDSSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSICADIKLALQGLNSILESKEGKLKLDFSAWRQELTVQKVKYPLNFKTFGDAIPPQYAIQVLDELTNG 471          
BLAST of EY684978 vs. ExPASy Swiss-Prot
Match: ILVB3_BRANA (Acetolactate synthase 3, chloroplastic OS=Brassica napus PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 1.247e-47
Identity = 93/131 (70.99%), Postives = 108/131 (82.44%), Query Frame = 3
Query:    3 QMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFDFSTWREELDEHEVKYPLSFTTFEQSIPPPTAVRALPISTRG 395
            QMLGMHGTVYANYAV+ SDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNK PHVSVC D+KLAL+G+N++L  +  E + DF  WR EL E + K+PLSF TF ++IPP  A++ L   T+G
Sbjct:  329 QMLGMHGTVYANYAVEHSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKTPHVSVCGDVKLALQGMNKVLENRAEELKLDFGVWRSELSEQKQKFPLSFKTFGEAIPPQYAIQVLDELTQG 459          
BLAST of EY684978 vs. ExPASy Swiss-Prot
Match: ILVB1_BRANA (Acetolactate synthase 1, chloroplastic OS=Brassica napus PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 2.127e-47
Identity = 93/131 (70.99%), Postives = 107/131 (81.68%), Query Frame = 3
Query:    3 QMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFDFSTWREELDEHEVKYPLSFTTFEQSIPPPTAVRALPISTRG 395
            QMLGMHGTVYANYAV+ SDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNK PHVSVC D+KLAL+G+N++L  +  E + DF  WR EL E + K+PLSF TF ++IPP  A++ L   T G
Sbjct:  332 QMLGMHGTVYANYAVEHSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKTPHVSVCGDVKLALQGMNKVLENRAEELKLDFGVWRSELSEQKQKFPLSFKTFGEAIPPQYAIQILDELTEG 462          
BLAST of EY684978 vs. ExPASy Swiss-Prot
Match: ILVB_ARATH (Acetolactate synthase, chloroplastic OS=Arabidopsis thaliana GN=CSR 1.2 PE=1 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 4.011e-46
Identity = 91/130 (70.00%), Postives = 106/130 (81.54%), Query Frame = 3
Query:    6 MLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFDFSTWREELDEHEVKYPLSFTTFEQSIPPPTAVRALPISTRG 395
            MLGMHGTVYANYAV+ SDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNK PHVSVC D+KLAL+G+N++L  +  E + DF  WR EL+  + K+PLSF TF ++IPP  A++ L   T G
Sbjct:  348 MLGMHGTVYANYAVEHSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKTPHVSVCGDVKLALQGMNKVLENRAEELKLDFGVWRNELNVQKQKFPLSFKTFGEAIPPQYAIKVLDELTDG 477          
BLAST of EY684978 vs. ExPASy Swiss-Prot
Match: ILVB1_ORYSJ (Acetolactate synthase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=ALS1 PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 1.167e-45
Identity = 88/131 (67.18%), Postives = 106/131 (80.92%), Query Frame = 3
Query:    3 QMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFDFSTWREELDEHEVKYPLSFTTFEQSIPPPTAVRALPISTRG 395
            +MLGMHGTVYANYAVDK+DLLLAFGVRFDDRVTGK+EAFASRAKIVHIDID AEIGKNKQPHVS+CAD+KLAL+G+N +L     +   DFS W  ELD+ + ++PL + TF + IPP  A++ L   T+G
Sbjct:  321 RMLGMHGTVYANYAVDKADLLLAFGVRFDDRVTGKIEAFASRAKIVHIDIDPAEIGKNKQPHVSICADVKLALQGLNALLQQSTTKTSSDFSAWHNELDQQKREFPLGYKTFGEEIPPQYAIQVLDELTKG 451          
BLAST of EY684978 vs. ExPASy Swiss-Prot
Match: ILVB2_MAIZE (Acetolactate synthase 2, chloroplastic OS=Zea mays GN=ALS2 PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.524e-45
Identity = 86/131 (65.65%), Postives = 107/131 (81.68%), Query Frame = 3
Query:    3 QMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFDFSTWREELDEHEVKYPLSFTTFEQSIPPPTAVRALPISTRG 395
            +MLGMHGTVYANYAVDK+DLLLAFGVRFDDRVTGK+EAFA RAKIVHIDID AEIGKNKQPHVS+CAD+KLAL+G+N +L G  ++  FDF +W +ELD+ + ++PL +  F + I P  A++ L   T+G
Sbjct:  315 RMLGMHGTVYANYAVDKADLLLAFGVRFDDRVTGKIEAFAGRAKIVHIDIDPAEIGKNKQPHVSICADVKLALQGMNTLLEGSTSKKSFDFGSWHDELDQQKREFPLGYKIFNEEIQPQYAIQVLDELTKG 445          
BLAST of EY684978 vs. ExPASy Swiss-Prot
Match: ILVB1_MAIZE (Acetolactate synthase 1, chloroplastic OS=Zea mays GN=ALS1 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 5.792e-45
Identity = 85/131 (64.89%), Postives = 107/131 (81.68%), Query Frame = 3
Query:    3 QMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFDFSTWREELDEHEVKYPLSFTTFEQSIPPPTAVRALPISTRG 395
            +MLGMHGTVYANYAVDK+DLLLA GVRFDDRVTGK+EAFASRAKIVH+DID AEIGKNKQPHVS+CAD+KLAL+G+N +L G  ++  FDF +W +ELD+ + ++PL + T  + I P  A++ L   T+G
Sbjct:  315 RMLGMHGTVYANYAVDKADLLLALGVRFDDRVTGKIEAFASRAKIVHVDIDPAEIGKNKQPHVSICADVKLALQGMNALLEGSTSKKSFDFGSWNDELDQQKREFPLGYKTSNEEIQPQYAIQVLDELTKG 445          
BLAST of EY684978 vs. ExPASy Swiss-Prot
Match: ILVB2_ORYSJ (Probable acetolactate synthase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=ALS2 PE=2 SV=2)

HSP 1 Score: 176.022 bits (445), Expect = 3.178e-43
Identity = 85/134 (63.43%), Postives = 106/134 (79.10%), Query Frame = 3
Query:    3 QMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAEG---RFDFSTWREELDEHEVKYPLSFTTFEQSIPPPTAVRALPISTRG 395
            +MLGMHGTVYANYAVD +DLLLA GVRFDDRVTGK+EAFASRAKIVH+DID +E+GKNKQPHVS+CAD+KLAL+G+N +L  + A       DFS WR EL++ +V++PL + TF + IPP  A++ L   T G
Sbjct:  335 RMLGMHGTVYANYAVDNADLLLALGVRFDDRVTGKVEAFASRAKIVHVDIDPSELGKNKQPHVSICADVKLALQGMNAMLEEQSAAAARKNLDFSAWRSELEKKKVEFPLGYRTFGEEIPPQYAIQVLDEVTNG 468          
BLAST of EY684978 vs. ExPASy Swiss-Prot
Match: ILVB2_BRANA (Acetolactate synthase 2, chloroplastic OS=Brassica napus PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 4.151e-43
Identity = 91/144 (63.19%), Postives = 108/144 (75.00%), Query Frame = 3
Query:    3 QMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFDFSTWREELDEHEVKYPLSFTTFEQSIPPPTAVRALPISTRGGGGAFTIGLQPHK 434
            QMLGMHGTVYANYAV+ SDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDS EIGKNK PHVSVC D++LAL+G+N +L  ++     DF  WR EL+E  +K+PL + TF + IPP  A++ L   T  G    T G+  H+
Sbjct:  324 QMLGMHGTVYANYAVEYSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSTEIGKNKTPHVSVCCDVQLALQGMNEVL--ENRRDVLDFGEWRCELNEQRLKFPLRYKTFGEEIPPQYAIQLLDELT-DGKAIITTGVGQHQ 464          
The following BLAST results are available for this feature:
BLAST of EY684978 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
ILVB1_TOBAC1.332e-4973.85Acetolactate synthase 1, chloroplastic OS=Nicotian... [more]
ILVB2_TOBAC2.272e-4973.85Acetolactate synthase 2, chloroplastic OS=Nicotian... [more]
ILVB3_BRANA1.247e-4770.99Acetolactate synthase 3, chloroplastic OS=Brassica... [more]
ILVB1_BRANA2.127e-4770.99Acetolactate synthase 1, chloroplastic OS=Brassica... [more]
ILVB_ARATH4.011e-4670.00Acetolactate synthase, chloroplastic OS=Arabidopsi... [more]
ILVB1_ORYSJ1.167e-4567.18Acetolactate synthase 1, chloroplastic OS=Oryza sa... [more]
ILVB2_MAIZE1.524e-4565.65Acetolactate synthase 2, chloroplastic OS=Zea mays... [more]
ILVB1_MAIZE5.792e-4564.89Acetolactate synthase 1, chloroplastic OS=Zea mays... [more]
ILVB2_ORYSJ3.178e-4363.43Probable acetolactate synthase 2, chloroplastic OS... [more]
ILVB2_BRANA4.151e-4363.19Acetolactate synthase 2, chloroplastic OS=Brassica... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-007-B04-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684978 ID=EY684978; Name=EY684978; organism=Citrus sinensis; type=EST; length=1050bp
TGCAAATGCTAGGAATGCATGGGACTGTGTATGCAAATTATGCAGTCGAT
AAGAGTGATTTGTTGCTTGCTTTTGGGGTTAGGTTTGATGATCGTGTGAC
TGGGAAGCTTGAGGCTTTTGCTAGCCGAGCTAAGATTGTTCATATTGATA
TTGATTCTGCGGAGATTGGGAAGAATAAGCAGCCTCATGTGTCGGTCTGT
GCAGATTTGAAGTTGGCTTTGAAGGGAATTAATAGAATATTGGGGGGTAA
AGATGCTGAGGGTAGGTTTGATTTTTCAACTTGGAGGGAAGAGCTTGATG
AGCACGAGGTGAAATACCCTTTGAGTTTTACGACATTTGAACAGTCGATT
CCACCGCCGACTGCCGTTCGCGCTCTTCCCATCTCTACGAGGGGGGGGGG
GGGGGCGTTCACCATAGGGCTCCAACCCCACAAGAACTGCACTACTACAC
TCGGCCCAAAACACAACACATGCGCACCCGACCCCGCGGCACACCGCAGC
GGCGAGTGCCGGCGCCGCCGACGCCCGTCCAACCCGCACAACCACAGAGC
CCCCGCCACCCCAGCACACGGAGGGCAGGAACCCACAACACCACCAGCCC
ATCAACAAAAACGCCAGCATCGACGAAGAAGAGCAGACGCCAGCCAATAA
TCACACCAAGCCGAGCCCCCCAACATCCCCCGGCCCCAACAACAGCGAAG
CCCCGGCAAGACCAGAGCACAACCGACAACAACCGCAGGAGAAAAACAAA
CACCACAACACAACAACGAAGATCACCCGACAACCCCGCAGAGAGAGAAC
AACGCACACACCAGCCCCCGCACACAGGGGCGGCCGACCAGCGCGACAAC
CAGAGCCCACACGGCCACGGCAAGACAAGGCCAAGCCCACGGCCACCACG
ACACCCACACCCGCCGCACCCCTCAGCGCCCACTCTAGCGAAGACGCGCC
CGCCCGCCACAATGCAGGCACCCCCCACCAGCGACCCGCGACCGAACCAC
GCAACCCGAGCAACTGACACCGACACCGACCCCACCCACCCAACCCCCCG
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