EY684936

Overview
NameEY684936
Unique NameEY684936
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length970
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684936 vs. ExPASy Swiss-Prot
Match: SBP1_ANTMA (Squamosa promoter-binding protein 1 OS=Antirrhinum majus GN=SBP1 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.084e-34
Identity = 68/81 (83.95%), Postives = 71/81 (87.65%), Query Frame = 2
Query:  236 SCQVENCRANMTDAKKYHRRHKVCDFHAKAPVVRVEGLAQRFCQQCSRFHELSEFDDTKRSCRRRLAGHNERRRKSSADYH 478
            SCQVENC A MT+AK YHRRHKVC+FHAKAPVV   GL QRFCQQCSRFHELSEFD+ KRSCRRRLAGHNERRRKSS D H
Sbjct:   51 SCQVENCAAEMTNAKPYHRRHKVCEFHAKAPVVLHSGLQQRFCQQCSRFHELSEFDEAKRSCRRRLAGHNERRRKSSHDTH 131          
BLAST of EY684936 vs. ExPASy Swiss-Prot
Match: SBP2_ANTMA (Squamosa promoter-binding protein 2 OS=Antirrhinum majus GN=SBP2 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.731e-32
Identity = 63/83 (75.90%), Postives = 72/83 (86.75%), Query Frame = 2
Query:  239 CQVENCRANMTDAKKYHRRHKVCDFHAKAPVVRVEGLAQRFCQQCSRFHELSEFDDTKRSCRRRLAGHNERRRKSSADYHGEG 487
            C VENC A++ + KKY++RH+VC+ HAKAPVV VEGL QRFCQQCSRFH+LSEFD TKRSCRRRLAGHNERRRKSS + H EG
Sbjct:   85 CLVENCGADLRNCKKYYQRHRVCEVHAKAPVVSVEGLMQRFCQQCSRFHDLSEFDQTKRSCRRRLAGHNERRRKSSLESHKEG 167          
BLAST of EY684936 vs. ExPASy Swiss-Prot
Match: SPL3_ARATH (Squamosa promoter-binding-like protein 3 OS=Arabidopsis thaliana GN=SPL3 PE=1 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 8.589e-32
Identity = 61/78 (78.21%), Postives = 69/78 (88.46%), Query Frame = 2
Query:  239 CQVENCRANMTDAKKYHRRHKVCDFHAKAPVVRVEGLAQRFCQQCSRFHELSEFDDTKRSCRRRLAGHNERRRKSSAD 472
            CQVE+C A+M+ AK+YH+RHKVC FHAKAP VR+ GL QRFCQQCSRFH LSEFD+ KRSCRRRLAGHNERRRKS+ D
Sbjct:   54 CQVESCTADMSKAKQYHKRHKVCQFHAKAPHVRISGLHQRFCQQCSRFHALSEFDEAKRSCRRRLAGHNERRRKSTTD 131          
BLAST of EY684936 vs. ExPASy Swiss-Prot
Match: SPL5_ARATH (Squamosa promoter-binding-like protein 5 OS=Arabidopsis thaliana GN=SPL5 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.240e-30
Identity = 64/107 (59.81%), Postives = 79/107 (73.83%), Query Frame = 2
Query:  239 CQVENCRANMTDAKKYHRRHKVCDFHAKAPVVRVEGLAQRFCQQCSRFHELSEFDDTKRSCRRRLAGHNERRRKSSADYHGEGSN*EYVILRINYGGRRIK-RKKNR 556
            CQV+ C  N+T+AK+Y+RRH+VC+ HAKA    V G+ QRFCQQCSRFHEL EFD+ KRSCRRRLAGHNERRRK S D  GEGS       R  + G+ I+ +++NR
Sbjct:   63 CQVDRCTVNLTEAKQYYRRHRVCEVHAKASAATVAGVRQRFCQQCSRFHELPEFDEAKRSCRRRLAGHNERRRKISGDSFGEGSG------RRGFSGQLIQTQERNR 163          
BLAST of EY684936 vs. ExPASy Swiss-Prot
Match: SPL13_ORYSJ (Squamosa promoter-binding-like protein 13 OS=Oryza sativa subsp. japonica GN=SPL13 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 4.713e-30
Identity = 61/83 (73.49%), Postives = 70/83 (84.34%), Query Frame = 2
Query:  239 CQVENCRANMTDAKKYHRRHKVCDFHAKAPVVRVEGLAQRFCQQCSRFHELSEFDDTKRSCRRRLAGHNERRRKSSAD-YHGE 484
            CQVE C  ++++A +Y+RRHKVC  H+K PVV V GL QRFCQQCSRFHEL+EFDD KRSCRRRLAGHNERRRKS+AD  HGE
Sbjct:  110 CQVERCGVDLSEAGRYNRRHKVCQTHSKEPVVLVAGLRQRFCQQCSRFHELTEFDDAKRSCRRRLAGHNERRRKSAADTAHGE 192          
BLAST of EY684936 vs. ExPASy Swiss-Prot
Match: SPL4_ARATH (Squamosa promoter-binding-like protein 4 OS=Arabidopsis thaliana GN=SPL4 PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.050e-29
Identity = 61/85 (71.76%), Postives = 70/85 (82.35%), Query Frame = 2
Query:  239 CQVENCRANMTDAKKYHRRHKVCDFHAKAPVVRVEGLAQRFCQQCSRFHELSEFDDTKRSCRRRLAGHNERRRKSSAD-YHGEGS 490
            CQV+ C A+M +AK YHRRHKVC+ HAKA  V + GL QRFCQQCSRFH+L EFD+ KRSCRRRLAGHNERRRKSS +  +GEGS
Sbjct:   54 CQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRSCRRRLAGHNERRRKSSGESTYGEGS 138          
BLAST of EY684936 vs. ExPASy Swiss-Prot
Match: SPL12_ARATH (Squamosa promoter-binding-like protein 12 OS=Arabidopsis thaliana GN=SPL12 PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.980e-28
Identity = 55/91 (60.44%), Postives = 70/91 (76.92%), Query Frame = 2
Query:  221 PTTFVSCQVENCRANMTDAKKYHRRHKVCDFHAKAPVVRVEGLAQRFCQQCSRFHELSEFDDTKRSCRRRLAGHNERRRKSSADYHGEGSN 493
            P+  + CQV+NC A+++  K YHRRHKVC+ H+KA    V G+ QRFCQQCSRFH L EFD+ KRSCRRRLAGHN+RRRK++ D  G G++
Sbjct:  121 PSRAICCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFDEGKRSCRRRLAGHNKRRRKANPDTIGNGTS 211          
BLAST of EY684936 vs. ExPASy Swiss-Prot
Match: SPL7_ORYSJ (Squamosa promoter-binding-like protein 7 OS=Oryza sativa subsp. japonica GN=SPL7 PE=2 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 2.189e-27
Identity = 55/77 (71.43%), Postives = 62/77 (80.52%), Query Frame = 2
Query:  239 CQVENCRANMTDAKKYHRRHKVCDFHAKAPVVRVEGLAQRFCQQCSRFHELSEFDDTKRSCRRRLAGHNERRRKSSA 469
            CQVE C   +   K+YHRRHKVC+ HAKAP V V G  QRFCQQCSRFH L+EFDD K+SCRRRLAGHNERRR+S+A
Sbjct:  108 CQVEGCDITLQGVKEYHRRHKVCEVHAKAPRVVVHGTEQRFCQQCSRFHVLAEFDDAKKSCRRRLAGHNERRRRSNA 184          
BLAST of EY684936 vs. ExPASy Swiss-Prot
Match: SPL7_ORYSI (Squamosa promoter-binding-like protein 7 OS=Oryza sativa subsp. indica GN=SPL7 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 2.189e-27
Identity = 55/77 (71.43%), Postives = 62/77 (80.52%), Query Frame = 2
Query:  239 CQVENCRANMTDAKKYHRRHKVCDFHAKAPVVRVEGLAQRFCQQCSRFHELSEFDDTKRSCRRRLAGHNERRRKSSA 469
            CQVE C   +   K+YHRRHKVC+ HAKAP V V G  QRFCQQCSRFH L+EFDD K+SCRRRLAGHNERRR+S+A
Sbjct:  108 CQVEGCDITLQGVKEYHRRHKVCEVHAKAPRVVVHGTEQRFCQQCSRFHVLAEFDDAKKSCRRRLAGHNERRRRSNA 184          
BLAST of EY684936 vs. ExPASy Swiss-Prot
Match: SPL1_ARATH (Squamosa promoter-binding-like protein 1 OS=Arabidopsis thaliana GN=SPL1 PE=1 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 1.087e-26
Identity = 53/84 (63.10%), Postives = 65/84 (77.38%), Query Frame = 2
Query:  239 CQVENCRANMTDAKKYHRRHKVCDFHAKAPVVRVEGLAQRFCQQCSRFHELSEFDDTKRSCRRRLAGHNERRRKSSADYHGEGS 490
            CQVENC A+++  K YHRRHKVC+ H+KA    V G+ QRFCQQCSRFH L EFD+ KRSCRRRLAGHN+RRRK++ +    G+
Sbjct:  106 CQVENCEADLSKVKDYHRRHKVCEMHSKATSATVGGILQRFCQQCSRFHLLQEFDEGKRSCRRRLAGHNKRRRKTNPEPGANGN 189          
The following BLAST results are available for this feature:
BLAST of EY684936 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
SBP1_ANTMA1.084e-3483.95Squamosa promoter-binding protein 1 OS=Antirrhinum... [more]
SBP2_ANTMA1.731e-3275.90Squamosa promoter-binding protein 2 OS=Antirrhinum... [more]
SPL3_ARATH8.589e-3278.21Squamosa promoter-binding-like protein 3 OS=Arabid... [more]
SPL5_ARATH1.240e-3059.81Squamosa promoter-binding-like protein 5 OS=Arabid... [more]
SPL13_ORYSJ4.713e-3073.49Squamosa promoter-binding-like protein 13 OS=Oryza... [more]
SPL4_ARATH1.050e-2971.76Squamosa promoter-binding-like protein 4 OS=Arabid... [more]
SPL12_ARATH1.980e-2860.44Squamosa promoter-binding-like protein 12 OS=Arabi... [more]
SPL7_ORYSJ2.189e-2771.43Squamosa promoter-binding-like protein 7 OS=Oryza ... [more]
SPL7_ORYSI2.189e-2771.43Squamosa promoter-binding-like protein 7 OS=Oryza ... [more]
SPL1_ARATH1.087e-2663.10Squamosa promoter-binding-like protein 1 OS=Arabid... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-005-E06-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684936 ID=EY684936; Name=EY684936; organism=Citrus sinensis; type=EST; length=970bp
CCACGCGTCCGGCTCCATCTCTGTTTCTTTGGTTACTTGTTTTCTCTTTA
TAAACAGAAAAAAAATGGAAGCAAGCAGAGCTGAAGGAAAGAGGAGCTTG
AAGGAGGATGATCAAGAAGAAGAGGAAGATGATGAAGATAGTGGTGGTGG
TATTGCTGGAGAGGAAGACAAGATCAAGAAGAAAGGCAAGAGAGGATCAA
GCAGCGCCGGAGCTGGGGGTCCAACGACATTTGTATCTTGTCAGGTGGAG
AATTGTAGGGCTAATATGACGGATGCCAAGAAATACCATAGGCGACATAA
GGTCTGTGACTTCCACGCCAAGGCTCCTGTTGTTCGTGTCGAGGGTCTTG
CACAACGCTTTTGCCAGCAATGTAGCAGGTTCCATGAACTGTCGGAGTTC
GATGACACCAAAAGGAGTTGCCGTAGACGTTTGGCCGGGCACAACGAGCG
CCGCCGGAAAAGCTCAGCTGACTATCATGGAGAAGGCTCAAACTGAGAGT
ACGTAATATTAAGGATTAATTATGGAGGCAGGCGAATAAAAAGAAAGAAG
AATCGTTTTTACCCAAATACCTTTCTCATTATATGTATGCCCCTTGCGTC
GGCAATTAACCTAACGTGCTCTCTCCTCTTCTGTCACTGCTCGATCCGAC
TGAACTGTCAGGCGCCGAATGGTGCTCCAAATAATCCCGAATTCTTAACA
AATTATTATCTATATTGATACTTACCAAAGAAAAAACAAAGGGCGGCGCG
CCTCAAAAGAACCTAAGTTTCAGGCCGGCGGGCTTCGGACGCCCTAGGTC
CTTCCCCAGGGGCCACCCAAGGTCAGCTCTCGTGGGCGCGGATTTACAAG
CGGTCGGCAAACGAAAAAACAGAGGGAACGCAAGACCGGCAACGCACCTT
GTCAGAGACGGGCCGCCCGCTCCGGACGAGGCAAGCGACCTCACGGGGAG
ACGCCCCGACCCCGCGGCGC
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