EY684912

Overview
NameEY684912
Unique NameEY684912
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length890
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY684912_ssr152 microsatellite EY684912_ssr152:152..163. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY684912 vs. ExPASy Swiss-Prot
Match: SF3_HELAN (Pollen-specific protein SF3 OS=Helianthus annuus GN=SF3 PE=2 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 8.842e-57
Identity = 104/169 (61.54%), Postives = 126/169 (74.56%), Query Frame = 1
Query:  190 FGGTQQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTGSLEKSFEGTPKIVKPEKLV--ENENAQKVSNKFVGTRDKCVGCDRTVYPTDKVSVNGAAYHRSCFKCSHGS*TTTHQNILAMRGKSNAGIVRIQIVREKGN 690
            F GT QKC  C+KTVYLVDKL A+ RVYHKACFRCHHC  TLKLSNFNSF+GV+YCR HFDQLFKRTGSLEKSF+GTPK  KPE+    E ++A ++S+ F GTRDKC  C + VYP ++V V+G AYHR+CFKC HG  T +  N +A  G+       IQ+ ++KGN
Sbjct:    4 FTGTTQKCTVCEKTVYLVDKLVANQRVYHKACFRCHHCNSTLKLSNFNSFDGVVYCRHHFDQLFKRTGSLEKSFDGTPKF-KPERTFSQETQSANRLSSFFEGTRDKCNACAKIVYPIERVKVDGTAYHRACFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLFKKKGN 171          

HSP 2 Score: 76.6406 bits (187), Expect = 2.062e-13
Identity = 38/111 (34.23%), Postives = 58/111 (52.25%), Query Frame = 1
Query:  169 AAAMASPFGGTQQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTGSLEKSFEGTPKIVKPEKLVENENAQKVSNKFVGTRD 501
            A  ++S F GT+ KC AC K VY ++++  D   YH+ACF+C H   T+  SN+ + EG LYC+ H  QLFK+ G+  +           E   +N   Q    +   T++
Sbjct:   96 ANRLSSFFEGTRDKCNACAKIVYPIERVKVDGTAYHRACFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLFKKKGNYSQLEVEETVAAPAESETQNTETQNAETQNADTQN 206          
BLAST of EY684912 vs. ExPASy Swiss-Prot
Match: XIRP2_MOUSE (Xin actin-binding repeat-containing protein 2 OS=Mus musculus GN=Xirp2 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.945e-17
Identity = 36/76 (47.37%), Postives = 50/76 (65.79%), Query Frame = 1
Query:  184 SPFGGTQQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTGSLEKSF 411
            S F   ++ C+ C KTVY ++ L AD + +HK+CFRCHHC   L L N+ S  G +YC+PHF QLFK  G+ ++ F
Sbjct: 3248 SAFLSDKEICIICQKTVYPMECLIADKQNFHKSCFRCHHCSSKLSLGNYASLHGRIYCKPHFKQLFKSKGNYDEGF 3323          
BLAST of EY684912 vs. ExPASy Swiss-Prot
Match: CSRP3_RAT (Cysteine and glycine-rich protein 3 OS=Rattus norvegicus GN=Csrp3 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.203e-15
Identity = 46/151 (30.46%), Postives = 70/151 (46.36%), Query Frame = 1
Query:  187 PFGGTQQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTG----------------SLEKSFEGTPKIVKPEKLVENENAQKVSNKFVGTRDKCVGCDRTVYPTDKVSVNGAAYHRSCFKCS 591
            P  G   KC ACDKTVY  +++  + R +HK CF C  C+  L  +   + E  +YC+  + + +   G                 L   F+ +P   KP +     N  K S KF G  +KC  C ++VY  +KV   G  +H++CF C+
Sbjct:    2 PNWGGGAKCGACDKTVYHAEEIQCNGRSFHKTCFHCMACRKALDSTTVAAHESEIYCKVCYGRKYGPKGIGFGQGAGCLSTDTGEHLGLQFQQSP---KPARAATTSNPSKFSAKF-GESEKCPRCGKSVYAAEKVMGGGKPWHKTCFPCA 148          
BLAST of EY684912 vs. ExPASy Swiss-Prot
Match: CSRP3_MOUSE (Cysteine and glycine-rich protein 3 OS=Mus musculus GN=Csrp3 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.877e-15
Identity = 45/151 (29.80%), Postives = 71/151 (47.02%), Query Frame = 1
Query:  187 PFGGTQQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTG----------------SLEKSFEGTPKIVKPEKLVENENAQKVSNKFVGTRDKCVGCDRTVYPTDKVSVNGAAYHRSCFKCS 591
            P  G   KC AC+KTVY  +++  + R +HK CF C  C+  L  +   + E  +YC+  + + +   G                 L   F+ +P   KP +     N  K S KF G  +KC  C ++VY  +KV   G  +H++CF+C+
Sbjct:    2 PNWGGGAKCGACEKTVYHAEEIQCNGRSFHKTCFHCMACRKALDSTTVAAHESEIYCKVCYGRRYGPKGIGFGQGAGCLSTDTGEHLGLQFQQSP---KPARAATTSNPSKFSAKF-GESEKCPRCGKSVYAAEKVMGGGKPWHKTCFRCA 148          
BLAST of EY684912 vs. ExPASy Swiss-Prot
Match: CSRP3_HUMAN (Cysteine and glycine-rich protein 3 OS=Homo sapiens GN=CSRP3 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.877e-15
Identity = 45/151 (29.80%), Postives = 72/151 (47.68%), Query Frame = 1
Query:  187 PFGGTQQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTG----------------SLEKSFEGTPKIVKPEKLVENENAQKVSNKFVGTRDKCVGCDRTVYPTDKVSVNGAAYHRSCFKCS 591
            P  G   KC AC+KTVY  +++  + R +HK CF C  C+  L  +   + E  +YC+  + + +   G                 L   F+ +P   KP + V   N  K + KF G  +KC  C ++VY  +KV   G  +H++CF+C+
Sbjct:    2 PNWGGGAKCGACEKTVYHAEEIQCNGRSFHKTCFHCMACRKALDSTTVAAHESEIYCKVCYGRRYGPKGIGYGQGAGCLSTDTGEHLGLQFQQSP---KPARSVTTSNPSKFTAKF-GESEKCPRCGKSVYAAEKVMGGGKPWHKTCFRCA 148          
BLAST of EY684912 vs. ExPASy Swiss-Prot
Match: LIMD2_MOUSE (LIM domain-containing protein 2 OS=Mus musculus GN=Limd2 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.865e-14
Identity = 31/70 (44.29%), Postives = 45/70 (64.29%), Query Frame = 1
Query:  202 QQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTGSLEKSF 411
            ++ C AC KTVY +++L AD  ++H +CF C HC   L L ++ +  G  YCRPHF QLFK  G+ ++ F
Sbjct:   38 KETCAACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYAAMHGEFYCRPHFQQLFKSKGNYDEGF 107          
BLAST of EY684912 vs. ExPASy Swiss-Prot
Match: LIMA1_HUMAN (LIM domain and actin-binding protein 1 OS=Homo sapiens GN=LIMA1 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.865e-14
Identity = 31/74 (41.89%), Postives = 49/74 (66.22%), Query Frame = 1
Query:  202 QQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTGSLEKSFEGTP 423
            ++ C+ C KTVY +++L A+ +V+H +CFRC +C   L L  + S  G +YC+PHF+QLFK  G+ ++ F   P
Sbjct:  387 RETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDEGFGHRP 460          
BLAST of EY684912 vs. ExPASy Swiss-Prot
Match: LIMA1_MOUSE (LIM domain and actin-binding protein 1 OS=Mus musculus GN=Lima1 PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 2.436e-14
Identity = 30/70 (42.86%), Postives = 48/70 (68.57%), Query Frame = 1
Query:  202 QQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTGSLEKSF 411
            ++ C+ C KTVY +++L A+ +V+H +CFRC +C   L L  + S  G +YC+PHF+QLFK  G+ ++ F
Sbjct:  385 KESCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDEGF 454          
BLAST of EY684912 vs. ExPASy Swiss-Prot
Match: LIMD2_RAT (LIM domain-containing protein 2 OS=Rattus norvegicus GN=Limd2 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.155e-14
Identity = 30/70 (42.86%), Postives = 45/70 (64.29%), Query Frame = 1
Query:  202 QQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTGSLEKSF 411
            ++ C AC KTVY +++L AD  ++H +CF C HC   L L ++ +  G  YC+PHF QLFK  G+ ++ F
Sbjct:   38 KETCAACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYAAMHGEFYCKPHFQQLFKSKGNYDEGF 107          
BLAST of EY684912 vs. ExPASy Swiss-Prot
Match: LIMD2_HUMAN (LIM domain-containing protein 2 OS=Homo sapiens GN=LIMD2 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.155e-14
Identity = 30/70 (42.86%), Postives = 45/70 (64.29%), Query Frame = 1
Query:  202 QQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTGSLEKSF 411
            ++ C AC KTVY +++L AD  ++H +CF C HC   L L ++ +  G  YC+PHF QLFK  G+ ++ F
Sbjct:   37 KETCAACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYAALHGEFYCKPHFQQLFKSKGNYDEGF 106          
The following BLAST results are available for this feature:
BLAST of EY684912 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
SF3_HELAN8.842e-5761.54Pollen-specific protein SF3 OS=Helianthus annuus G... [more]
XIRP2_MOUSE8.945e-1747.37Xin actin-binding repeat-containing protein 2 OS=M... [more]
CSRP3_RAT2.203e-1530.46Cysteine and glycine-rich protein 3 OS=Rattus norv... [more]
CSRP3_MOUSE2.877e-1529.80Cysteine and glycine-rich protein 3 OS=Mus musculu... [more]
CSRP3_HUMAN2.877e-1529.80Cysteine and glycine-rich protein 3 OS=Homo sapien... [more]
LIMD2_MOUSE1.865e-1444.29LIM domain-containing protein 2 OS=Mus musculus GN... [more]
LIMA1_HUMAN1.865e-1441.89LIM domain and actin-binding protein 1 OS=Homo sap... [more]
LIMA1_MOUSE2.436e-1442.86LIM domain and actin-binding protein 1 OS=Mus musc... [more]
LIMD2_RAT4.155e-1442.86LIM domain-containing protein 2 OS=Rattus norvegic... [more]
LIMD2_HUMAN4.155e-1442.86LIM domain-containing protein 2 OS=Homo sapiens GN... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-005-C01-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684912 ID=EY684912; Name=EY684912; organism=Citrus sinensis; type=EST; length=890bp
CCACGCGTCCGTTTTCCTCACATTTTGGTTTCTTTTTTTCTCCTCATTAT
CATCAATAAAACACAAAAAAGAAGAAGGCGCTGGAATCAAGAAAAAAAAT
CACGAAGTTGCTTCTCTTAATACAATAAATCTGAGGTTCGGTTGGACCGG
AAGCTAGCTAGCTAGCAAGCAGCAGCCATGGCATCACCCTTTGGAGGAAC
CCAACAAAAATGCATGGCCTGTGACAAAACTGTGTACCTTGTTGACAAGT
TGACGGCCGATAATCGGGTCTATCACAAAGCTTGCTTCCGGTGCCACCAT
TGCAAAGGAACCCTCAAGCTCAGTAACTTCAATTCCTTTGAGGGGGTCCT
GTATTGCAGGCCTCACTTTGATCAGCTCTTCAAGAGAACTGGCAGCCTGG
AGAAGAGTTTTGAAGGAACACCAAAGATTGTGAAACCTGAAAAGCTCGTT
GAAAATGAGAATGCACAGAAAGTCTCCAACAAGTTTGTGGGCACCAGAGA
TAAATGTGTGGGATGCGATAGGACTGTTTATCCCACTGACAAGGTTTCTG
TAAATGGCGCCGCATATCATAGGAGCTGCTTCAAGTGCAGCCATGGAAGT
TGAACAACGACCCATCAAAATATATTGGCCATGAGGGGAAAGTCTAATGC
AGGAATCGTACGCATACAAATCGTTCGGGAAAAAGGCAACTAACACAAGT
GGCGACCAACTTGAAAAAAATCGAATGTCCACAAAACAAACTCCGGTACA
CATGAGGCCGAAACTAACATCCAAAGGAGACTTGCCCCATAAGACAACGC
ACGAGCCGCCCGCCGCACAACCAACATCAACCGCGGCGGGACCAGCCCAG
CCGAGAGAGACGACCACCAACGAGACACATGGGAACAAAC
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