EY684903

Overview
NameEY684903
Unique NameEY684903
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length909
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684903 vs. ExPASy Swiss-Prot
Match: COG4_ARATH (Conserved oligomeric Golgi complex subunit 4 OS=Arabidopsis thaliana GN=COG4 PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 1.088e-49
Identity = 99/104 (95.19%), Postives = 102/104 (98.08%), Query Frame = 1
Query:   25 LIIDFIVKRLEVIMMQKKFSQLGGLQLDRDTRASVSHFSSMTQRTVRDKFARLTQMATILNLEKVSEILDFWGENSGPMTWRLTPAEVRRVLGLRVDFKPEAIA 336
            LIIDFIVKRLEVIMMQK+FSQLGGLQLDRDTRA VSHFS MTQRTVRDKFARLTQMATILNLEKVSEILDFWGENSGPMTWRLTPAEVRRVLGLRV+FKPE+IA
Sbjct:  631 LIIDFIVKRLEVIMMQKRFSQLGGLQLDRDTRALVSHFSGMTQRTVRDKFARLTQMATILNLEKVSEILDFWGENSGPMTWRLTPAEVRRVLGLRVEFKPESIA 734          
BLAST of EY684903 vs. ExPASy Swiss-Prot
Match: COG4_PONAB (Conserved oligomeric Golgi complex subunit 4 OS=Pongo abelii GN=COG4 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 3.290e-30
Identity = 59/104 (56.73%), Postives = 85/104 (81.73%), Query Frame = 1
Query:   22 GLIIDFIVKRLEVIMMQKKFSQLGGLQLDRDTRASVSHFSSMTQRTVRDKFARLTQMATILNLEKVSEILDFWGENSGPMTWRLTPAEVRRVLGLRVDFKPEAI 333
            GL+   +   LE ++++  F++LGGLQ D++ R+ +++ +++T  T+RDKFARL+QMATILNLE+V+EILD+WG NSGP+TWRLTPAEVR+VL LR+DF+ E I
Sbjct:  677 GLMTSLVTVELEKVVLKSTFNRLGGLQFDKELRSLIAYLTTVTTWTIRDKFARLSQMATILNLERVTEILDYWGPNSGPLTWRLTPAEVRQVLALRIDFRSEDI 780          
BLAST of EY684903 vs. ExPASy Swiss-Prot
Match: COG4_HUMAN (Conserved oligomeric Golgi complex subunit 4 OS=Homo sapiens GN=COG4 PE=1 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 3.290e-30
Identity = 59/104 (56.73%), Postives = 85/104 (81.73%), Query Frame = 1
Query:   22 GLIIDFIVKRLEVIMMQKKFSQLGGLQLDRDTRASVSHFSSMTQRTVRDKFARLTQMATILNLEKVSEILDFWGENSGPMTWRLTPAEVRRVLGLRVDFKPEAI 333
            GL+   +   LE ++++  F++LGGLQ D++ R+ +++ +++T  T+RDKFARL+QMATILNLE+V+EILD+WG NSGP+TWRLTPAEVR+VL LR+DF+ E I
Sbjct:  677 GLMTSLVAVELEKVVLKSTFNRLGGLQFDKELRSLIAYLTTVTTWTIRDKFARLSQMATILNLERVTEILDYWGPNSGPLTWRLTPAEVRQVLALRIDFRSEDI 780          
BLAST of EY684903 vs. ExPASy Swiss-Prot
Match: COG4_MOUSE (Conserved oligomeric Golgi complex subunit 4 OS=Mus musculus GN=Cog4 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 4.297e-30
Identity = 59/104 (56.73%), Postives = 85/104 (81.73%), Query Frame = 1
Query:   22 GLIIDFIVKRLEVIMMQKKFSQLGGLQLDRDTRASVSHFSSMTQRTVRDKFARLTQMATILNLEKVSEILDFWGENSGPMTWRLTPAEVRRVLGLRVDFKPEAI 333
            GL+   +   LE ++++  F++LGGLQ D++ R+ +++ +++T  T+RDKFARL+QMATILNLE+V+EILD+WG NSGP+TWRLTPAEVR+VL LR+DF+ E I
Sbjct:  677 GLMTSLVAVELEKVVLKSTFNRLGGLQFDKELRSLIAYLTTVTTWTIRDKFARLSQMATILNLERVTEILDYWGANSGPLTWRLTPAEVRQVLALRIDFRNEDI 780          
BLAST of EY684903 vs. ExPASy Swiss-Prot
Match: COG4_BOVIN (Conserved oligomeric Golgi complex subunit 4 OS=Bos taurus GN=COG4 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.633e-29
Identity = 58/103 (56.31%), Postives = 84/103 (81.55%), Query Frame = 1
Query:   25 LIIDFIVKRLEVIMMQKKFSQLGGLQLDRDTRASVSHFSSMTQRTVRDKFARLTQMATILNLEKVSEILDFWGENSGPMTWRLTPAEVRRVLGLRVDFKPEAI 333
            L+   +   LE ++++  F++LGGLQ D++ R+ +++ +++T  T+RDKFARL+QMATILNLE+V+EILD+WG NSGP+TWRLTPAEVR+VL LR+DF+ E I
Sbjct:  678 LMTSLVAVELEKVVLKSTFNRLGGLQFDKELRSLIAYLTTVTTWTIRDKFARLSQMATILNLERVTEILDYWGANSGPLTWRLTPAEVRQVLALRIDFRSEDI 780          
BLAST of EY684903 vs. ExPASy Swiss-Prot
Match: COG4_DICDI (Conserved oligomeric Golgi complex subunit 4 OS=Dictyostelium discoideum GN=cog4 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.876e-20
Identity = 45/102 (44.12%), Postives = 73/102 (71.57%), Query Frame = 1
Query:   31 IDFIVKRLE-VIMMQKKFSQLGGLQLDRDTRASVSHFSSMTQRTVRDKFARLTQMATILNLEKVSEILDFWGENSGPMTWRLTPAEVRRVLGLRVDFKPEAI 333
            I FI+K++E + + QKKF+ LGGLQ  +D RA  ++F+ ++Q T+RDKF++L Q+++ L LE +SE+ D W EN    TW+L+ +EV+++L  R+DF  + I
Sbjct:  804 IQFILKKIEGITIQQKKFTLLGGLQFGKDLRAISTYFTKISQSTIRDKFSKLNQISSFLILESISEVEDHWNENRNSPTWKLSSSEVQKILMTRIDFNHDQI 905          
BLAST of EY684903 vs. ExPASy Swiss-Prot
Match: COG4_DROME (Conserved oligomeric Golgi complex subunit 4 OS=Drosophila melanogaster GN=CG7456 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.289e-15
Identity = 45/107 (42.06%), Postives = 71/107 (66.36%), Query Frame = 1
Query:   19 VGLIIDFIVKRLEVIMMQKKFSQLGGLQLDRDTRASVSHFSSMTQRTVRDKFARLTQMATILNLEKVSEILDFWG-ENSGPM-TWRLTPAEVRRVLGLRVDFKPEAI 333
            V ++   +  +LE  + +  F++LGGL LD++ RA  S+ +  T  +VRDK  R++Q+AT+LNL+K++E+ ++W  EN+  M +W LTP EVR  L LR DF+ E I
Sbjct:  665 VSILATEVTIQLERAIKKISFNRLGGLVLDQEVRALGSYLTGATSWSVRDKMTRISQIATLLNLDKITELSEYWNPENNKEMSSWHLTPNEVRTFLTLRNDFRIEDI 771          
The following BLAST results are available for this feature:
BLAST of EY684903 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
COG4_ARATH1.088e-4995.19Conserved oligomeric Golgi complex subunit 4 OS=Ar... [more]
COG4_PONAB3.290e-3056.73Conserved oligomeric Golgi complex subunit 4 OS=Po... [more]
COG4_HUMAN3.290e-3056.73Conserved oligomeric Golgi complex subunit 4 OS=Ho... [more]
COG4_MOUSE4.297e-3056.73Conserved oligomeric Golgi complex subunit 4 OS=Mu... [more]
COG4_BOVIN1.633e-2956.31Conserved oligomeric Golgi complex subunit 4 OS=Bo... [more]
COG4_DICDI6.876e-2044.12Conserved oligomeric Golgi complex subunit 4 OS=Di... [more]
COG4_DROME2.289e-1542.06Conserved oligomeric Golgi complex subunit 4 OS=Dr... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C2-003-005-B03-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684903 ID=EY684903; Name=EY684903; organism=Citrus sinensis; type=EST; length=909bp
CCACGCGTCCGCGGACGCGTGGGTTTGATCATTGATTTTATAGTAAAGAG
GCTTGAAGTGATCATGATGCAGAAAAAGTTCAGTCAGCTTGGTGGCCTGC
AGCTCGACAGAGATACAAGGGCTTCGGTAAGCCATTTCTCTAGCATGACT
CAGAGGACTGTCAGAGACAAGTTTGCTCGGCTTACTCAAATGGCAACAAT
ACTTAACTTAGAAAAAGTCTCTGAGATTCTAGATTTCTGGGGTGAGAACT
CAGGACCTATGACCTGGAGACTAACCCCAGCTGAGGTTAGACGAGTTCTA
GGTCTAAGGGTTGATTTTAAACCTGAAGCAATAGCCCTTCTGAAGCTTTA
ATCCAATTTTTAACTAAATTTCCCATTTTTGAATTTTCATACTTTTGTGC
CCTGCTAGTGATAAGAGGCAAGTCTGTGCAGACCTATATTGTTTACTTAT
CATTCTTTGACATGGTTTTTGCTTTTTCACATTGGACAGTTTTCTCTGTT
TCACATTCAACTACGAATATATGGTTTTTGTCAGCGACATTACATTANNA
AAAAAAAAAAAAAAAAAAAAAAAAAANNAAAAAAAAANAAAAAAAAAAAA
NAAAAANAAAAAAAAAAAAAANAAAAAAAAAAAAAAAAACCCAAAAANNA
AANAANAAAANAAAAANNANNNANNAANNNAANNNNNNAAAAAAAAAAAA
AAAAAGGGGGGGCGCCGCAAAAAAGACACGGGATACGACCGCGCGGGGCG
GGCACCGCACCTCTCTTGCTTTTGGGGCCCAAAAAATTTTCTCCGGGGGC
GGGGTTCTTCACAGCGCGAGAGGGGGGAAACCGCCGGGGGTACCCCACAA
TGTTTCCCCCGCGACGCAACCGCCCCGTTTTGCCCCGCGGGGGGGAAAAC
AGAGGAAAA
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