EY684841

Overview
NameEY684841
Unique NameEY684841
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length905
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY684841 vs. ExPASy Swiss-Prot
Match: U2AFB_ARATH (Splicing factor U2af small subunit B OS=Arabidopsis thaliana GN=U2AF35B PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.052e-12
Identity = 31/35 (88.57%), Postives = 34/35 (97.14%), Query Frame = 3 
Query:    3 FSPVTHFREATCRQYEENTCNRGGYCNFMHLKRIS 107
            FSPVT FREATCRQYEEN+CNRGGYCNFMH+K+IS
Sbjct:  143 FSPVTDFREATCRQYEENSCNRGGYCNFMHVKQIS 177
[Close]
BLAST of EY684841 vs. ExPASy Swiss-Prot
Match: U2AFA_ARATH (Splicing factor U2af small subunit A OS=Arabidopsis thaliana GN=U2AF35A PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.997e-12
Identity = 30/35 (85.71%), Postives = 32/35 (91.43%), Query Frame = 3 
Query:    3 FSPVTHFREATCRQYEENTCNRGGYCNFMHLKRIS 107
            FSPVT FREATCRQYEEN CNRGGYCNFMH+K +S
Sbjct:  143 FSPVTDFREATCRQYEENNCNRGGYCNFMHVKLVS 177
[Close]
BLAST of EY684841 vs. ExPASy Swiss-Prot
Match: U2AFA_ORYSJ (Splicing factor U2af small subunit A OS=Oryza sativa subsp. japonica GN=U2AF35A PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.163e-11
Identity = 29/34 (85.29%), Postives = 32/34 (94.12%), Query Frame = 3 
Query:    3 FSPVTHFREATCRQYEENTCNRGGYCNFMHLKRI 104
            FSPV+ FREATCRQYEEN+CNRGGYCNFMH+K I
Sbjct:  143 FSPVSDFREATCRQYEENSCNRGGYCNFMHVKEI 176
[Close]
BLAST of EY684841 vs. ExPASy Swiss-Prot
Match: U2AFB_ORYSJ (Splicing factor U2af small subunit B OS=Oryza sativa subsp. japonica GN=U2AF35B PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.984e-11
Identity = 28/34 (82.35%), Postives = 33/34 (97.06%), Query Frame = 3 
Query:    3 FSPVTHFREATCRQYEENTCNRGGYCNFMHLKRI 104
            +SPVT FREATCRQ+EEN+CNRGGYCNFMH+K+I
Sbjct:  143 YSPVTDFREATCRQFEENSCNRGGYCNFMHVKQI 176
The following BLAST results are available for this feature:
BLAST of EY684841 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
U2AFB_ARATH1.052e-1288.57Splicing factor U2af small subunit B OS=Arabidopsi... [more]
U2AFA_ARATH3.997e-1285.71Splicing factor U2af small subunit A OS=Arabidopsi... [more]
U2AFA_ORYSJ1.163e-1185.29Splicing factor U2af small subunit A OS=Oryza sati... [more]
U2AFB_ORYSJ1.984e-1182.35Splicing factor U2af small subunit B OS=Oryza sati... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C2-003-004-D03-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684841 ID=EY684841; Name=EY684841; organism=Citrus sinensis; type=EST; length=905bp
ACTTCTCTCCCGTAACGCACTTTCGAGAAGCTACCTGTAGACAATATGAG
GAGAATACCTGCAATCGTGGTGGGTACTGCAATTTTATGCACCTAAAAAG
GATTAGCAGGGATTTGAGGCGCCAGCTATTTGGTAGATATAGACGAAGAC
ATAGCCGTAGCAGAAGCAGAAGCAGAAGTCCTTACAGGCATCGCAGCCAT
GAAGACCGCTCTCACAGTGGGCACGGTAGAAGGTATGATGACAGGGACAA
GTATTATGAAAGTCGAAGCAGGAGGCACAGGAGCACAAGCCCTAGCCACC
GAAGAGGGAGAAGTAGAAGCCCTGGTGGAAGACGGAATCGCAGCCCTGTC
AGGGAAGGCTGTGAGGAGAGACCTGCCACAATTGACCAGTAGGAGAGGGG
AGGGGAACACAAACAACAAGCCTTAATAAAGAAATACGCACGGTGACCCC
ATCGAACCAGGGAAGGAACCCTGATGGGCTGGATGCGAACCGCAGCCGGC
CCATACTAACTACCAACAGTGCCCCCAGACACCACGACCGAACAAGAAAA
CCCGACACCCATCTACAGGCAGACCGAACGGCCCGCCCCCCCGCACTACC
CCACCCAAGCCCACCGTCACGCGTCACTCCCACCCCACCCGCAGCCCCCC
GGCAAGGCCCACCCCACCAACCACCCCAAGCACAGCAGCAAAAACGCACC
ACCAGCCCAAACAACTAATGCCAGCCGCACGACGCGGCAGGCCCACACAC
GCGGCGGAAAGTCTGCCCGCCAAAATCCCCAAGACTCACGAAACCCCCCA
CCACAACTCCAGCACTGAGCTCACACCCNAACATACCGAACGCATCACAT
CACGCCCCCAACCCCCGCACCCAGAACCGACAACGGCACCATCGCCCGCA
CGAAA
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