EY684837

Overview
NameEY684837
Unique NameEY684837
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length960
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4622 contig Csv1_Contig4622:440..1399. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY684837 vs. ExPASy Swiss-Prot
Match: RAB7_PEA (Ras-related protein Rab7 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.809e-42
Identity = 82/92 (89.13%), Postives = 88/92 (95.65%), Query Frame = 2
Query:    2 PRVRPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDTIDVGNSSQPRSSGCEC 277
            P   PFVV+GNKID+DGGNSRVVSEKKARAWCA+KGNIPYFETSAKEGINVEEAFQ IAK+ALKSGEEEE+YLPDTIDVGNSSQPRS+GCEC
Sbjct:  115 PENFPFVVIGNKIDIDGGNSRVVSEKKARAWCAAKGNIPYFETSAKEGINVEEAFQTIAKDALKSGEEEELYLPDTIDVGNSSQPRSTGCEC 206          
BLAST of EY684837 vs. ExPASy Swiss-Prot
Match: RAB7_PRUAR (Ras-related protein Rab7 OS=Prunus armeniaca PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 2.288e-37
Identity = 77/93 (82.80%), Postives = 81/93 (87.10%), Query Frame = 2
Query:    2 PRVRPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDTIDV-GNSSQPRSSGCEC 277
            P   PFVVLGNKIDVDGGNSRVVSEKKA+AWCASKGNIPYFETSAKEG NV++AFQCIAKNAL +  EEEIYLPDTIDV G   Q RSSGCEC
Sbjct:  115 PENFPFVVLGNKIDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVDDAFQCIAKNALNNEPEEEIYLPDTIDVAGGGRQQRSSGCEC 207          
BLAST of EY684837 vs. ExPASy Swiss-Prot
Match: RAB7_GOSHI (Ras-related protein Rab7 OS=Gossypium hirsutum GN=RAB7 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 5.636e-36
Identity = 72/93 (77.42%), Postives = 82/93 (88.17%), Query Frame = 2
Query:    2 PRVRPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDTIDVGNSSQP-RSSGCEC 277
            P   PFVVLGNK+DVDGGNSRVVSEKKA+AWCASKGNIPYFETSAKEG NV+ AF+CIA+NALK+  EEEIYLP+TIDV +  +P RS+GCEC
Sbjct:  115 PENFPFVVLGNKVDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVDAAFECIARNALKNEPEEEIYLPETIDVASGGRPQRSTGCEC 207          
BLAST of EY684837 vs. ExPASy Swiss-Prot
Match: RAB7_CENCI (Ras-related protein Rab7 OS=Cenchrus ciliaris PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 3.093e-34
Identity = 69/87 (79.31%), Postives = 78/87 (89.66%), Query Frame = 2
Query:   14 PFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDTID-VGNSSQPRSSGC 271
            PFV+LGNK+DVDGGNSRVVSEKKA+AWCASKGNIPYFETSAKEG NVE+AFQCI KNALK+  EEE+Y+PDT+D VG +   RSSGC
Sbjct:  119 PFVLLGNKVDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGTNVEDAFQCIVKNALKNEPEEELYVPDTVDVVGGNRAQRSSGC 205          
BLAST of EY684837 vs. ExPASy Swiss-Prot
Match: RAB7_MESCR (Ras-related protein Rab7A OS=Mesembryanthemum crystallinum PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 8.999e-34
Identity = 68/89 (76.40%), Postives = 79/89 (88.76%), Query Frame = 2
Query:   14 PFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDTIDVGNSSQPR-SSGCEC 277
            PFV+LGNKIDVDGG+ RVVSEKKA+AWC SKGNIPYFETSAK+G NVEEAFQCIAKNA+++  EEE YLPDTID+  S++P+ SS CEC
Sbjct:  119 PFVLLGNKIDVDGGSGRVVSEKKAKAWCMSKGNIPYFETSAKDGTNVEEAFQCIAKNAIQNEPEEETYLPDTIDMAGSTRPQSSSACEC 207          
BLAST of EY684837 vs. ExPASy Swiss-Prot
Match: YPTC5_CHLRE (GTP-binding protein YPTC5 OS=Chlamydomonas reinhardtii GN=YPTC5 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 4.783e-27
Identity = 56/87 (64.37%), Postives = 74/87 (85.06%), Query Frame = 2
Query:   14 PFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDTIDVG-NSSQPRSSGC 271
            PF+VLGNKID +GG+SR VSEKKA+AWCASKG+IPYFETSAKE INVE AF CI +NAL++ +EEE+++PD +D+   ++Q + +GC
Sbjct:  119 PFMVLGNKIDENGGSSRQVSEKKAKAWCASKGSIPYFETSAKEDINVEAAFTCITRNALRNEKEEELFMPDAVDMNTTATQRKRAGC 205          
BLAST of EY684837 vs. ExPASy Swiss-Prot
Match: RAB7_VIGAC (Ras-related protein Rab7 OS=Vigna aconitifolia PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.392e-26
Identity = 57/92 (61.96%), Postives = 67/92 (72.83%), Query Frame = 2
Query:    2 PRVRPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDTIDVGNSSQPRSSGCEC 277
            PR  PF++LGNKID+DGGNSRVVSEKKA+ WCASKGNIPYFETSAKE  NV+ AF CIAK AL +  E++IY     +       + SGC C
Sbjct:  115 PRSFPFILLGNKIDIDGGNSRVVSEKKAKDWCASKGNIPYFETSAKEDFNVDAAFLCIAKAALANEHEQDIYFQGIPEAAVPENEQRSGCAC 206          
BLAST of EY684837 vs. ExPASy Swiss-Prot
Match: RAB7_SOYBN (Ras-related protein Rab7 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.374e-26
Identity = 56/92 (60.87%), Postives = 67/92 (72.83%), Query Frame = 2
Query:    2 PRVRPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDTIDVGNSSQPRSSGCEC 277
            PR  PF++LGNKID+DGGNSRVVSEKKA+ WCA+KGNIPYFETSAKE  NV+ AF CIAK AL +  E++IY     +       + SGC C
Sbjct:  115 PRAFPFILLGNKIDIDGGNSRVVSEKKAKDWCAAKGNIPYFETSAKEDYNVDAAFLCIAKAALANEHEQDIYFQGIPEAAVPENEQRSGCAC 206          
BLAST of EY684837 vs. ExPASy Swiss-Prot
Match: YPTV5_VOLCA (GTP-binding protein yptV5 OS=Volvox carteri GN=YPTV5 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 9.972e-25
Identity = 56/88 (63.64%), Postives = 69/88 (78.41%), Query Frame = 2
Query:   14 PFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDTIDVGNSSQPRSSGCEC 277
            PFVVLGNKID  G N R V+EKKA+AWCASKG+IPYFETSAKE INVE AF CI +NAL++ +EEE+++PD +D+  S+  R  G  C
Sbjct:  119 PFVVLGNKIDEVGVN-RQVTEKKAKAWCASKGSIPYFETSAKEDINVEAAFTCITRNALRNEKEEELFVPDAVDMNTSATQRKRGGCC 205          
BLAST of EY684837 vs. ExPASy Swiss-Prot
Match: RAB7_ARATH (Ras-related protein Rab7 OS=Arabidopsis thaliana GN=RAB7 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.881e-23
Identity = 54/93 (58.06%), Postives = 66/93 (70.97%), Query Frame = 2
Query:    2 PRVRPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYL-PDTIDVGNSSQPRSSGCEC 277
            P   PF++LGNK+D+DGGNSRVVSEKKAR WCA KGNI YFETSAKE  NV+++F CI K AL +  +++IY  PDT     S   +  GC C
Sbjct:  115 PMAFPFILLGNKVDIDGGNSRVVSEKKAREWCAEKGNIVYFETSAKEDYNVDDSFLCITKLALANERDQDIYFQPDT----GSVPEQRGGCAC 203          
The following BLAST results are available for this feature:
BLAST of EY684837 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
RAB7_PEA1.809e-4289.13Ras-related protein Rab7 OS=Pisum sativum PE=2 SV=... [more]
RAB7_PRUAR2.288e-3782.80Ras-related protein Rab7 OS=Prunus armeniaca PE=2 ... [more]
RAB7_GOSHI5.636e-3677.42Ras-related protein Rab7 OS=Gossypium hirsutum GN=... [more]
RAB7_CENCI3.093e-3479.31Ras-related protein Rab7 OS=Cenchrus ciliaris PE=2... [more]
RAB7_MESCR8.999e-3476.40Ras-related protein Rab7A OS=Mesembryanthemum crys... [more]
YPTC5_CHLRE4.783e-2764.37GTP-binding protein YPTC5 OS=Chlamydomonas reinhar... [more]
RAB7_VIGAC1.392e-2661.96Ras-related protein Rab7 OS=Vigna aconitifolia PE=... [more]
RAB7_SOYBN2.374e-2660.87Ras-related protein Rab7 OS=Glycine max PE=2 SV=1[more]
YPTV5_VOLCA9.972e-2563.64GTP-binding protein yptV5 OS=Volvox carteri GN=YPT... [more]
RAB7_ARATH1.881e-2358.06Ras-related protein Rab7 OS=Arabidopsis thaliana G... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-004-C10-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684837 ID=EY684837; Name=EY684837; organism=Citrus sinensis; type=EST; length=960bp
CCCACGCGTCCGCCCCTTTGTTGTTTTAGGAAATAAGATTGATGTAGATG
GTGGAAACAGTAGGGTGGTTTCGGAGAAGAAGGCTCGAGCATGGTGTGCT
TCCAAAGGAAATATTCCTTACTTTGAGACCTCTGCAAAAGAAGGCATTAA
TGTGGAAGAAGCTTTCCAGTGCATAGCTAAAAATGCTTTGAAGAGTGGGG
AGGAGGAAGAGATATACTTGCCGGACACCATTGATGTTGGTAACAGCAGC
CAGCCAAGGTCAAGTGGATGCGAGTGCTAAAGATATGGTCTAATTTTTTC
AAGGAGCAATAAGCAGTATAACAAATGATTTGGCCTTTTTAACCATTTTT
ATGGGTATGTATAAGGTTACATTGTACATTAGTGTTTGTGTGAAACGGGG
GGGGTCATTCCTACTAGTTACCTTTACTTGCCTGGGTCCTTCAGTGCCAC
GTACTGCTCGAAAAGACCAGCTCAACTCCTACAACGGAAGACTTCCCGAC
GGCACTTTATACCCGGCATCCCAACGCCCCACCCCGATGCCCCGACCACA
GCCCATCAAACGAACCCCCAACGCGACACCCCCCAAAGACAAACGCGGAA
GAAATAGACACATACATGCACCAACCACAAGCACAAAACATAGCAAGGTC
TCCACCTGGACCGCAGGTAAGACACAAGAAGACAAGTACCGGGACAGACG
CGACGTACCAGATAGGCACGCCAGAGACCACCGCAGGCAGCGCGCGGGCA
CCACCAACAGGGAGGACGCCCAGTTCGCATGCCGCGTGGGTCACCGGACG
GGAGGAGGCGGATCCCCTCACCTCGATCCGGCACCACACGCAGCCACCCA
CACCCTCCGCCACGGACCACCAATCAAAGCAATCTACCGCGAGGCGCCGG
GTTAACCGCCAATCGGACCACACTGCCTCCAGATCGCCCGGAGCCACGCG
CCACGCGCGC
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