EY684835

Overview
NameEY684835
Unique NameEY684835
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length935
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY684835_ssr475 microsatellite EY684835_ssr475:475..489. BLAST: Citrus ESTs to Prunus persica proteins V1
EY684835_ssr504 microsatellite EY684835_ssr504:504..518. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY684835 vs. ExPASy Swiss-Prot
Match: GRXC6_ARATH (Glutaredoxin-C6 OS=Arabidopsis thaliana GN=GRXC6 PE=2 SV=2)

HSP 1 Score: 195.282 bits (495), Expect = 4.269e-49
Identity = 101/141 (71.63%), Postives = 114/141 (80.85%), Query Frame = 1
Query:   40 GLRRYPNDVVHLDLTPPSST--TNLSIDGEESSEARIQRLISEHPVIIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFIGGTCVGGLESLVALHIGGHLVPKLVEIGALWV 456
            GL+R+ NDVV LDLTPPS T  T+LSID EES+EA+I+RLISEHPVIIFSRSSCCMCHVMK L ATIGV PTVIELDDHE+S+LP    DE  ++       P PAVFIG  CVGGLESLVALH+ G LVPKLV++GALWV
Sbjct:    6 GLQRFSNDVVRLDLTPPSQTSSTSLSIDEEESTEAKIRRLISEHPVIIFSRSSCCMCHVMKRLLATIGVIPTVIELDDHEVSSLPTALQDE--YSGGVSVVGPPPAVFIGRECVGGLESLVALHLSGQLVPKLVQVGALWV 144          
BLAST of EY684835 vs. ExPASy Swiss-Prot
Match: GRC10_ARATH (Glutaredoxin-C10 OS=Arabidopsis thaliana GN=GRXC10 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.683e-37
Identity = 87/159 (54.72%), Postives = 106/159 (66.67%), Query Frame = 1
Query:   34 MQGLRRYPNDVVHLDLT----------PPS--------STTNLSIDGEESSEARIQRLISEHPVIIFSR-SSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFIGGTCVGGLESLVALHIGGHLVPKLVEIGALW 453
            M+GLR   ND V LDLT          PP+        ++T+LS D EE+SE++I RLISEHPVIIF+R SSCCMCHVMK L +T+GVHPTVIE+DD EI+ L +                 AP +FIGGTCVGG ESLVALH+ G L+P+LVE+GALW
Sbjct:    4 MRGLRNCSNDAVTLDLTVHPPPPPPLPPPAPSTVSSSTASTSLSFDEEETSESKIGRLISEHPVIIFTRFSSCCMCHVMKKLLSTVGVHPTVIEIDDGEIAYLAV---------------EAAPVLFIGGTCVGGFESLVALHLSGQLIPRLVEVGALW 147          
BLAST of EY684835 vs. ExPASy Swiss-Prot
Match: GRXC7_ORYSJ (Glutaredoxin-C7 OS=Oryza sativa subsp. japonica GN=GRXC7 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.294e-21
Identity = 55/111 (49.55%), Postives = 70/111 (63.06%), Query Frame = 1
Query:  118 GEESSEARIQRLISEHPVIIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFIGGTCVGGLESLVALHIGGHLVPKLVEIGAL 450
            GE+ +E RI RL+ E PV+IF+R  CCMCHVM+ L A +G H TVIELD+    A           A S    A  PA+F+GG  VGGL+ L+ LH+ G LVP+L E+GAL
Sbjct:   38 GEQPAE-RIGRLVRESPVVIFARRGCCMCHVMRRLLAAVGAHATVIELDEAAEEA-----------AASAAAAAAVPALFVGGAPVGGLDGLMGLHLSGRLVPRLREVGAL 136          
BLAST of EY684835 vs. ExPASy Swiss-Prot
Match: GRXC3_ORYSJ (Glutaredoxin-C3 OS=Oryza sativa subsp. japonica GN=GRXC3 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.884e-21
Identity = 57/117 (48.72%), Postives = 73/117 (62.39%), Query Frame = 1
Query:  124 ESSEARIQRLISEHPVIIFSRSSCCMCHVMKTLFATIGVHPTVIELD------DHEISALPLVDHDESAHADSPRNPAPAPAVFIGGTCVGGLESLVALHIGGHLVPKLVEIGALWV 456
            ES+ AR++RL SE  V++FS SSCCMCH +K LF  +GVHPTV ELD      + E +   LV +   A A    +P   P VFIGG  VG ++ ++A HI G LVP L E GALW+
Sbjct:   23 ESAVARVERLASESAVVVFSVSSCCMCHAVKRLFCGMGVHPTVHELDLDPRGRELERALARLVGYGGPAAA----SPPVVPVVFIGGKLVGAMDRVMAAHINGSLVPLLKEAGALWL 135          
BLAST of EY684835 vs. ExPASy Swiss-Prot
Match: GRXC5_ORYSJ (Putative glutaredoxin-C5 OS=Oryza sativa subsp. japonica GN=GRXC5 PE=3 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 3.525e-19
Identity = 54/117 (46.15%), Postives = 69/117 (58.97%), Query Frame = 1
Query:  124 ESSEARIQRLISEHPVIIFSRSSCCMCHVMKTLFATIGVHPTVIELD------DHEISALPLVDHDESAHADSPRNPAPAPAVFIGGTCVGGLESLVALHIGGHLVPKLVEIGALWV 456
            E++  R++RL SE  V++FS SSCCMCH +K LF  +GVHP V ELD      D E +   LV    +A        A  P VFIGG  VG ++ ++A HI G LVP L E GALW+
Sbjct:   26 ETAAERVERLASESAVVVFSVSSCCMCHAVKRLFCGMGVHPAVHELDLDPRGRDLERALARLVGAGGAA-------AAAVPVVFIGGKLVGAMDRVMAAHINGSLVPLLKEAGALWL 135          
BLAST of EY684835 vs. ExPASy Swiss-Prot
Match: GRXC1_ORYSJ (Glutaredoxin-C1 OS=Oryza sativa subsp. japonica GN=GRXC1.1 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 7.853e-19
Identity = 49/106 (46.23%), Postives = 64/106 (60.38%), Query Frame = 1
Query:  139 RIQRLISEHPVIIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFIGGTCVGGLESLVALHIGGHLVPKLVEIGALWV 456
            R+ RL ++  V+IFS SSCCMCH +  LF  +GV+PTV+ELD+      P     E A A         PAVFIGG  VG  + +++LH+ G+LVP L   GALWV
Sbjct:    3 RVNRLAAQRAVVIFSMSSCCMCHTVTRLFCELGVNPTVVELDED-----PRGKEMEKALARLLGRSPAVPAVFIGGRLVGSTDKVMSLHLSGNLVPLLRNAGALWV 103          
BLAST of EY684835 vs. ExPASy Swiss-Prot
Match: GRXS2_ORYSJ (Monothiol glutaredoxin-S2 OS=Oryza sativa subsp. japonica GN=GRXS2 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.026e-18
Identity = 54/119 (45.38%), Postives = 74/119 (62.18%), Query Frame = 1
Query:  103 NLSID--GEESSEA-RIQRLISEHPVIIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFIGGTCVGGLESLVALHIGGHLVPKLVEIGAL 450
            +L+ID  GEE + A R+ RL+ E PV++F+R  C M HVM+ L A +G H TVIEL+          + +E+A        A  PA+F+GG  VGGLE L+ LH+ G LVP+L E+GAL
Sbjct:   15 SLTIDPAGEEEAPAERVGRLVRESPVVVFARRGCYMAHVMRRLLAAVGAHATVIELEG------GAAEEEEAALGGG----AALPALFVGGDPVGGLEGLMGLHLSGRLVPRLREVGAL 123          
BLAST of EY684835 vs. ExPASy Swiss-Prot
Match: GRXS3_ARATH (Monothiol glutaredoxin-S3 OS=Arabidopsis thaliana GN=GRXS3 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.285e-18
Identity = 49/105 (46.67%), Postives = 67/105 (63.81%), Query Frame = 1
Query:  142 IQRLISEHPVIIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFIGGTCVGGLESLVALHIGGHLVPKLVEIGALWV 456
            +Q++ISE  V+IFS++SCCM H +KTLF  +GV+PT+ ELD  EIS    ++H  +    SP      P VFIGG  VGG   +++LH+   LVP L   GALW+
Sbjct:    4 LQKMISEKSVVIFSKNSCCMSHTIKTLFLDLGVNPTIYELD--EISRGKEIEHALAQLGCSP----TVPVVFIGGQLVGGANQVMSLHLNRSLVPMLKRAGALWL 102          
BLAST of EY684835 vs. ExPASy Swiss-Prot
Match: GRXC9_ORYSJ (Glutaredoxin-C9 OS=Oryza sativa subsp. japonica GN=GRXC9 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.648e-18
Identity = 49/122 (40.16%), Postives = 70/122 (57.38%), Query Frame = 1
Query:  109 SIDGEESSEA------RIQRLISEHPVIIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFIGGTCVGGLESLVALHIGGHLVPKLVEIGALWV 456
            +++ EE++ A      R+ R+ S + V++FS S CCMCHV+K L   +GV P V ELD    +A    D   +     P    P P VF+GG  +GG+E ++A HI G LVP L + GALW+
Sbjct:   75 AVEEEEAAAAMMSVYERVARMASGNAVVVFSASGCCMCHVVKRLLLGLGVGPAVYELDQLAAAA----DIQAALSQLLPPGQPPVPVVFVGGRLLGGVEKVMACHINGTLVPLLKQAGALWL 192          
BLAST of EY684835 vs. ExPASy Swiss-Prot
Match: GRXS8_ARATH (Monothiol glutaredoxin-S8 OS=Arabidopsis thaliana GN=GRXS8 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.481e-17
Identity = 47/106 (44.34%), Postives = 67/106 (63.21%), Query Frame = 1
Query:  139 RIQRLISEHPVIIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFIGGTCVGGLESLVALHIGGHLVPKLVEIGALWV 456
            +IQ++ISE  V+IFS +SCCM H +KTLF  +GV+PT+ ELD  EI+    +++  +    SP      P VFIGG  VGG   +++LH+   L+P L   GALW+
Sbjct:    3 KIQKMISEKSVVIFSNNSCCMSHTIKTLFLDLGVNPTIYELD--EINRGKEIEYALAQLGCSP----TVPVVFIGGQLVGGANQVMSLHLNRSLIPMLKRFGALWL 102          
The following BLAST results are available for this feature:
BLAST of EY684835 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
GRXC6_ARATH4.269e-4971.63Glutaredoxin-C6 OS=Arabidopsis thaliana GN=GRXC6 P... [more]
GRC10_ARATH1.683e-3754.72Glutaredoxin-C10 OS=Arabidopsis thaliana GN=GRXC10... [more]
GRXC7_ORYSJ1.294e-2149.55Glutaredoxin-C7 OS=Oryza sativa subsp. japonica GN... [more]
GRXC3_ORYSJ2.884e-2148.72Glutaredoxin-C3 OS=Oryza sativa subsp. japonica GN... [more]
GRXC5_ORYSJ3.525e-1946.15Putative glutaredoxin-C5 OS=Oryza sativa subsp. ja... [more]
GRXC1_ORYSJ7.853e-1946.23Glutaredoxin-C1 OS=Oryza sativa subsp. japonica GN... [more]
GRXS2_ORYSJ1.026e-1845.38Monothiol glutaredoxin-S2 OS=Oryza sativa subsp. j... [more]
GRXS3_ARATH2.285e-1846.67Monothiol glutaredoxin-S3 OS=Arabidopsis thaliana ... [more]
GRXC9_ORYSJ6.648e-1840.16Glutaredoxin-C9 OS=Oryza sativa subsp. japonica GN... [more]
GRXS8_ARATH1.481e-1744.34Monothiol glutaredoxin-S8 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-004-C07-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684835 ID=EY684835; Name=EY684835; organism=Citrus sinensis; type=EST; length=935bp
CAAGAATCTGTTTCTACTTTCTATAGAGAGGAGATGCAAGGCCTAAGGCG
TTACCCAAACGACGTCGTCCACCTCGACCTCACCCCTCCCTCGTCAACCA
CTAACTTGTCCATCGACGGTGAAGAATCCTCGGAGGCAAGAATCCAACGC
CTGATATCCGAGCACCCGGTGATAATATTCAGCCGGTCGTCTTGCTGCAT
GTGCCACGTCATGAAAACGCTCTTCGCCACCATCGGGGTGCACCCTACCG
TCATCGAGCTCGATGATCACGAGATCTCAGCCCTCCCTCTTGTTGACCAT
GATGAGAGCGCTCACGCCGACTCCCCTCGTAATCCGGCGCCGGCGCCCGC
AGTCTTCATCGGCGGCACGTGCGTCGGTGGCCTCGAGTCCCTCGTCGCCC
TCCACATCGGCGGCCACCTCGTGCCCAAGCTTGTAGAAATTGGCGCTCTC
TGGGTATGATAATTATTAGTTACTTTATTATTATTATTACTATAATATAT
CAAAATAATAATAATAATAAATCTATTATTACTACTATTATTATTAATAG
AATTAGAAAGGCACCCAATTCTGATTCTTATATATGTTATGTTAATTAAC
TTAAGTTTGGGGTCTTAATTACTCAAGTGTTCATTTAGGTCTCTCTTTTC
TTATTGGAAGGGGAACATAAACTTAAGGAAACGGCGGGGAAAACGAAAGA
AGAATGAAGATGAACCTCCTTCTCTCACTTGAGGATTGGCGAATAGGGCG
AATTACAACGGCCGCGGCTGGCGTTTCTGCAAAGATCACACGAGAAAAAG
GCACGAAGAGGAGTCGAAGGCACACGAGAGAGAGGATCACACACGAGAAA
AAAGAAAGCAGAGGAAGAAAGCTGGCAGGGGCGGACGCGAAGCAGAGAAA
AAGGGCCCAGACAAGCGAGGCCGCCTGTGAATGAG
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