EY684832

Overview
NameEY684832
Unique NameEY684832
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length955
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684832 vs. ExPASy Swiss-Prot
Match: ISCAP_ARATH (Iron-sulfur assembly protein IscA, chloroplastic OS=Arabidopsis thaliana GN=ISCA PE=2 SV=2)

HSP 1 Score: 214.927 bits (546), Expect = 5.395e-55
Identity = 103/121 (85.12%), Postives = 108/121 (89.26%), Query Frame = 2
Query:    5 SSTSAVAPATEDLKPAILLTEKALKHLSKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGTSF 367
            S++   APA E LKPAI L+E ALKHLSKMRSER EDLCLRIGVKQGGCSGMSYTM+FENRANARPDDS IEY GF IVCDPKS+LFLFGMQLDYSDALIGGGFSF NPNATQTCGCG SF
Sbjct:   56 SASVPAAPAMEGLKPAISLSENALKHLSKMRSERGEDLCLRIGVKQGGCSGMSYTMDFENRANARPDDSTIEYQGFTIVCDPKSMLFLFGMQLDYSDALIGGGFSFSNPNATQTCGCGKSF 176          
BLAST of EY684832 vs. ExPASy Swiss-Prot
Match: Y1417_SYNY3 (Uncharacterized protein slr1417 OS=Synechocystis sp. (strain PCC 6803) GN=slr1417 PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.632e-35
Identity = 68/117 (58.12%), Postives = 87/117 (74.36%), Query Frame = 2
Query:   20 VAPATEDLKPAILLTEKALKHLSKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGTSFG 370
            ++ AT      I L++ ALKHL  ++ ++ +DLCLR+GV+QGGCSGMSY M+FE    A   D V +Y+GF I+CD KSLL+L+G+ LDYS+ALIGGGF F NPNA QTCGCG SFG
Sbjct:    1 MSQATATQAKGIQLSDAALKHLLALKEQQGKDLCLRVGVRQGGCSGMSYMMDFEEPNRATEHDEVFDYEGFQIICDRKSLLYLYGLMLDYSNALIGGGFQFTNPNANQTCGCGKSFG 117          
BLAST of EY684832 vs. ExPASy Swiss-Prot
Match: YCF83_PORPU (Uncharacterized protein ycf83 OS=Porphyra purpurea GN=ycf83 PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.762e-32
Identity = 62/105 (59.05%), Postives = 79/105 (75.24%), Query Frame = 2
Query:   53 ILLTEKALKHLSKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGTSF 367
            I LTE A + +  ++S    ++CLRIGVKQGGCSGMSY+M FE+ ++ R  D V+  D F++ CDPKSLL+L+G+ LDYS  LIGGGF F NPNA+QTCGCG SF
Sbjct:    8 ITLTEPAARQIKILKSNFDNEVCLRIGVKQGGCSGMSYSMNFESVSSLRETDEVLMLDSFLVACDPKSLLYLYGLSLDYSSELIGGGFQFSNPNASQTCGCGKSF 112          
BLAST of EY684832 vs. ExPASy Swiss-Prot
Match: YCF83_PORYE (Uncharacterized protein ycf83 OS=Porphyra yezoensis GN=ycf83 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.024e-29
Identity = 58/105 (55.24%), Postives = 78/105 (74.29%), Query Frame = 2
Query:   53 ILLTEKALKHLSKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGTSF 367
            I +T+ ALK ++ ++++   D+ LRIGV+QGGCSGMSY+M FE+    +  D  +  D F +VCDPKSLL+L+G+ LD+S  LIGGGF F NPNA+QTCGCG SF
Sbjct:    8 ITITKPALKQIAILKNDHENDVHLRIGVRQGGCSGMSYSMNFEHVDKLKDTDERLRLDNFSVVCDPKSLLYLYGLSLDFSSELIGGGFQFSNPNASQTCGCGKSF 112          
BLAST of EY684832 vs. ExPASy Swiss-Prot
Match: YCF83_GALSU (Uncharacterized protein ycf83 OS=Galdieria sulphuraria GN=ycf83 PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.893e-29
Identity = 60/106 (56.60%), Postives = 78/106 (73.58%), Query Frame = 2
Query:   53 ILLTEKALKHLSKMRSERSED-LCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGTSF 367
            I +T+ AL HL+ +    SED L +RIG+KQGGCSG+SY M +E ++N   +D V +YD F +VCD KS+L+L+G+ LDYS +LI GGF F NPNA QTCGCG SF
Sbjct:    6 INITKSALDHLNSISKLNSEDKLYIRIGIKQGGCSGLSYFMTYEKKSNISDNDLVYDYDNFTLVCDNKSILYLYGISLDYSSSLIDGGFKFLNPNAKQTCGCGKSF 111          
BLAST of EY684832 vs. ExPASy Swiss-Prot
Match: ERPA_METFK (Putative iron-sulfur cluster insertion protein erpA OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=erpA PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 7.359e-20
Identity = 48/113 (42.48%), Postives = 69/113 (61.06%), Query Frame = 2
Query:   32 TEDLKPAILLTEKALKHLSKMRSER-SEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGTSF 367
            TE++   ++ T+ A + + ++  E  S DL LR+ V  GGCSG  Y   FE   N   DD+ ++ DG  ++ DP SL +L G ++DY D+L G  F  +NPNAT TCGCG+SF
Sbjct:    5 TEEIPSPLIFTDNAARKVKELIDEEGSPDLKLRVFVSGGGCSGFQYGFTFEETINE--DDTTVDKDGVTLLIDPMSLQYLVGAEIDYQDSLQGSQFVIRNPNATTTCGCGSSF 115          
BLAST of EY684832 vs. ExPASy Swiss-Prot
Match: ERPA_XYLFM (Iron--sulfur cluster insertion protein erpA OS=Xylella fastidiosa (strain M12) GN=erpA PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.255e-19
Identity = 53/124 (42.74%), Postives = 76/124 (61.29%), Query Frame = 2
Query:    2 SSSTSAVAPATEDLKPAILLTEKALKHLSKM-RSERSEDLCLRIGVKQGGCSGMSYTMEF-ENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGTSF 367
            S  T+   P  + L+  +  T  A   + ++ + E S DL LR+ ++ GGCSG  Y  EF ENRA+   DD V+E DG V++ DP SL +L G ++DY+++L G  F  +NPNA  TCGCG+SF
Sbjct:    6 SLPTAPSVPNYQSLERPLNFTMAAAAKVRELIQEENSADLALRVYIQGGGCSGFQYGFEFDENRAD---DDLVLETDGVVLLVDPLSLQYLLGAEVDYTESLTGAKFVIRNPNAKTTCGCGSSF 126          
BLAST of EY684832 vs. ExPASy Swiss-Prot
Match: ISCA1_DICDI (Iron-sulfur cluster assembly 1 homolog, mitochondrial OS=Dictyostelium discoideum GN=isca1 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.639e-19
Identity = 54/129 (41.86%), Postives = 80/129 (62.02%), Query Frame = 2
Query:    8 STSAVAPATEDLKPAIL-LTEKALKHLSKMRSERSEDLC--LRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGTSFGTRDES 385
            S S V    +  K AI  +T+ ALK + ++ +++  D C  LR+G+K+ GCSGMSYT++F  + N + D++V+      I+ D K+LL + G ++DY +  I   F F NPNAT TCGCG SF T+D S
Sbjct:    2 SISGVVKLGKPSKKAIFSMTDSALKRVKEIMNDKKIDNCIGLRLGIKERGCSGMSYTLDFATQKN-KFDETVVADKDINIIVDSKALLSVIGTEMDYIEEPIKKEFIFINPNATNTCGCGESFTTKDFS 129          
BLAST of EY684832 vs. ExPASy Swiss-Prot
Match: ERPA_STRMK (Iron--sulfur cluster insertion protein erpA OS=Stenotrophomonas maltophilia (strain K279a) GN=erpA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.796e-19
Identity = 52/122 (42.62%), Postives = 74/122 (60.66%), Query Frame = 2
Query:    8 STSAVAPATEDLKPAILLTEKAL-KHLSKMRSERSEDLCLRIGVKQGGCSGMSYTMEF-ENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGTSF 367
            +T A AP  + L+  +  TE A  K  S ++ E + DL LR+ ++ GGCSG  Y  EF ENRA    DD  ++  G  ++ DP SL +L G ++DY+++L G  F  +NPNA  TCGCG+SF
Sbjct:   10 ATPAAAPDYQSLERPLNFTESAAAKVKSLIQEEGNPDLALRVYIEGGGCSGFQYGFEFDENRAE---DDLAVQTSGVTLLVDPLSLQYLMGAEVDYTESLTGAQFVIRNPNAKTTCGCGSSF 128          
BLAST of EY684832 vs. ExPASy Swiss-Prot
Match: YUTM_BACSU (Uncharacterized protein yutM OS=Bacillus subtilis GN=yutM PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.652e-19
Identity = 47/108 (43.52%), Postives = 67/108 (62.04%), Query Frame = 2
Query:   53 ILLTEKALKHLSKMRSERSEDLC-LRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGTSFGT 373
            + +TE A  H+  M  E  E+   LR+GVK GGCSG+SY M FE+  +    DSV +  G  ++ D +SL  + G  +DY  +++GGGF+  NPNA  +CGCG+SF T
Sbjct:    5 VTITEAAALHIKDMMKEHEEENAFLRVGVKGGGCSGLSYGMGFEHEKSE--SDSVFDQHGITVLVDKESLDIMNGTVIDYKQSMLGGGFTIDNPNAIASCGCGSSFRT 110          
The following BLAST results are available for this feature:
BLAST of EY684832 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 346
Match NameE-valueIdentityDescription
ISCAP_ARATH5.395e-5585.12Iron-sulfur assembly protein IscA, chloroplastic O... [more]
Y1417_SYNY31.632e-3558.12Uncharacterized protein slr1417 OS=Synechocystis s... [more]
YCF83_PORPU3.762e-3259.05Uncharacterized protein ycf83 OS=Porphyra purpurea... [more]
YCF83_PORYE1.024e-2955.24Uncharacterized protein ycf83 OS=Porphyra yezoensi... [more]
YCF83_GALSU3.893e-2956.60Uncharacterized protein ycf83 OS=Galdieria sulphur... [more]
ERPA_METFK7.359e-2042.48Putative iron-sulfur cluster insertion protein erp... [more]
ERPA_XYLFM1.255e-1942.74Iron--sulfur cluster insertion protein erpA OS=Xyl... [more]
ISCA1_DICDI1.639e-1941.86Iron-sulfur cluster assembly 1 homolog, mitochondr... [more]
ERPA_STRMK2.796e-1942.62Iron--sulfur cluster insertion protein erpA OS=Ste... [more]
YUTM_BACSU3.652e-1943.52Uncharacterized protein yutM OS=Bacillus subtilis ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C2-003-004-C03-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684832 ID=EY684832; Name=EY684832; organism=Citrus sinensis; type=EST; length=955bp
ATCATCCTCTACATCAGCGGTGGCGCCGGCGACGGAGGACCTGAAGCCGG
CGATTTTACTGACAGAGAAAGCACTAAAGCATCTAAGCAAGATGAGGTCT
GAGCGTAGTGAGGATTTGTGCTTAAGAATTGGAGTGAAACAGGGCGGATG
CTCCGGCATGTCTTACACGATGGAGTTTGAGAACAGAGCAAATGCGAGAC
CAGATGATTCGGTTATCGAATATGATGGTTTTGTGATTGTTTGTGATCCA
AAGAGTCTCCTCTTTTTGTTTGGGATGCAATTGGATTACAGTGATGCCCT
TATTGGTGGAGGCTTTTCTTTCAAGAACCCAAATGCTACGCAAACTTGCG
GTTGCGGTACATCATTTGGCACAAGAGATGAGAGTACAATAGCTGGGGGG
TAGCGAGACAGTCCAACAATCACTAATGCCCACTACAACCTGCACCCACC
CAAAGAAAGTCAGAACAACACACAGCCAACTACTCTCAATCCCCCTATGC
ACATTTCAACCCTACAAGCTCCCCACAGCAGGCCGAACGCATAGCCCCCT
TACAATGCCCCCAGTGTCCCGACATGGCCTTCAGGCTCATGAAACCCCAC
TCACAACCCCAACCACACATAAACTACGACAAGCCACCACCGCTCAGAGC
TAAACCTCGCCCGTCCAACCCAGAAACCCCACCAGACAGGCACGTCCACT
ACGCACGCCACCCCACCCCAACACCTATGCACTAACCAACAAGACAAATA
ACAAACTGGCACTCGGACGCAGTGAGCGAGACACACAAGAAAAAGTTGAA
GACGCACCACGACAAGCGAAAGACAAAAACAACCCGAAAGAGCGAGGAGG
ACAGGATCACCCAAGCGCACGCACCAGAAAACGCCAACCCCCACCACCCC
CCCACCACGAGACCGTGCGGAGGACTACCACCCTCCGCACACCCCGAGCC
CGTCC
back to top