EY684831

Overview
NameEY684831
Unique NameEY684831
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length927
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY684831 vs. ExPASy Swiss-Prot
Match: RPB11_ARATH (DNA-directed RNA polymerase II subunit RPB11 OS=Arabidopsis thaliana GN=RPB13.6 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.250e-18
Identity = 45/55 (81.82%), Postives = 50/55 (90.91%), Query Frame = 2 
Query:    2 KLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFEAELAKHSRVY 166
            +LPHPL+YKIIVRIHTTSQSSPMQAYNQAINDLDKELD LK+ FEAE+AK S  +
Sbjct:   62 QLPHPLKYKIIVRIHTTSQSSPMQAYNQAINDLDKELDYLKNQFEAEVAKFSNQF 116
The following BLAST results are available for this feature:
BLAST of EY684831 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RPB11_ARATH2.250e-1881.82DNA-directed RNA polymerase II subunit RPB11 OS=Ar... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C2-003-004-C02-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684831 ID=EY684831; Name=EY684831; organism=Citrus sinensis; type=EST; length=927bp
CAAGCTCCCTCACCCTCTTCAGTACAAAATAATTGTTAGGATTCACACAA
CTAGTCAGTCTTCACCAATGCAGGCGTATAACCAGGCCATCAACGATCTA
GATAAGGAACTTGACACTCTGAAAAGTGCATTTGAGGCTGAGTTGGCGAA
GCATTCGAGAGTTTATTAAAATACCTATGAGGAAGCAGTTTGTGTTGTCA
GATGGGCGGTCTCTTTTGCTGGTCGGAAGGAAGAGAAATTTTCAAACATT
TGCTTTGATCGGATGATTGTAATGAATTAATGACTTTACAAAAGAAGGAA
TGACATAATGAATGTGAATATTTATTTTGTCTAATAGATGTTTTAATTGT
GGCACTCGTTAACATTAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGGGG
GGGGGGGAAACAAACACAAAACCTCCTCAGCCCCAAAAAACCACTAACAA
CCACCACGAGGGGGCCGCTCGTGAGGACCCCGCCTTCCTACAGCAGCCAG
TGCTACAGGCCCAAGTCGCCAAAACGACCAAACAAATGAGCCGGACCGAG
CCCTCGTATTCAGAGGAGGCCACCGGAGAACAAACGCCGACCCACCAACT
CGCCCGCCAGAGCCACCCTACCCCAACCGCACCCAACTGCCCCCACCGCA
ACAACACACCCAGCACGTACACACGCACGACTCACAGCCCCCGACACACT
ACGCCGCGCCGCACGACCCCCTGCCACCCCGACACCACAACGCCCAAACC
AGCACACACTGCAACGAAAGCGCGAAACCAAAACTTGAGCAGGAGGCGCC
GCACGAGCGAAGAGGCGCACGCGACCGGGCGCCTCAAGAGAAGATAGACC
AGCAAGAGACCAAACCAGCCTCACGAAAGGCACGGCGAACAACAACAAGA
ACGGCACGAGACAAGCACAGCGGCGCC
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