EY684821

Overview
NameEY684821
Unique NameEY684821
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length902
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684821 vs. ExPASy Swiss-Prot
Match: PSL4_HUMAN (Signal peptide peptidase-like 3 OS=Homo sapiens GN=SPPL3 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.325e-20
Identity = 44/101 (43.56%), Postives = 68/101 (67.33%), Query Frame = 1
Query:    4 WLVSAHWILNNLLGIAICIAFVSHVRLPNIKICAMLLVCLFVYDIFWVFFSERFFGANVMVSVSTQQASNPVHTVANSLSL-PGLQLITKKLELPVKIVFP 303
            W+++ HW+L + L + +C+A ++ VRLP++K+  +LL  L +YD+FWVFFS   F +NVMV V+TQ A NP+  ++  L L P +     +L LP K+VFP
Sbjct:  158 WVLTGHWLLMDALAMGLCVAMIAFVRLPSLKVSCLLLSGLLIYDVFWVFFSAYIFNSNVMVKVATQPADNPLDVLSRKLHLGPNVGRDVPRLSLPGKLVFP 258          
BLAST of EY684821 vs. ExPASy Swiss-Prot
Match: PSL4_MOUSE (Signal peptide peptidase-like 3 OS=Mus musculus GN=Sppl3 PE=2 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.507e-19
Identity = 43/101 (42.57%), Postives = 67/101 (66.34%), Query Frame = 1
Query:    4 WLVSAHWILNNLLGIAICIAFVSHVRLPNIKICAMLLVCLFVYDIFWVFFSERFFGANVMVSVSTQQASNPVHTVANSLSL-PGLQLITKKLELPVKIVFP 303
            W+++ HW+L + L + +C+A ++  RLP++K+  +LL  L +YD+FWVFFS   F +NVMV V+TQ A NP+  ++  L L P +     +L LP K+VFP
Sbjct:  157 WVLTGHWLLMDALAMGLCVAMIAFDRLPSLKVSCLLLSGLLIYDVFWVFFSAYIFNSNVMVKVATQPADNPLDVLSKKLHLGPNVGRDVPRLSLPGKLVFP 257          
BLAST of EY684821 vs. ExPASy Swiss-Prot
Match: HM13_MOUSE (Minor histocompatibility antigen H13 OS=Mus musculus GN=Hm13 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.365e-11
Identity = 55/181 (30.39%), Postives = 75/181 (41.44%), Query Frame = 1
Query:    4 WLVSAHWILNNLLGIAICIAFVSHVRLPNIKICAMLLVCLFVYDIFWVFFSERFFGANVMVSVSTQQASNPVHTVANSLSLPGLQLITKKLELPVKIVFPRNLFGGVTPGGNATDFXXXXXXXXXXXXXXXXXVLCFDHRKSTNTVSLFDLHYSKGHKYLWNALPGYAIGL-VTAFICRIF 543
            +L+  HWI NNL G+A  +  V  + L N+    +LL  LF+YDIFWV      FG NVMV+V+                        K  E P+K+VFP++L   +  G  A +F                 +L FD     NT           H Y + +   Y  GL +T FI  IF
Sbjct:  176 YLLRKHWIANNLFGLAFSLNGVELLHLNNVSTGCILLGGLFIYDIFWV------FGTNVMVTVA------------------------KSFEAPIKLVFPQDL---LEKGLEADNFAMLGLGDIVIPGIFIALLLRFDISLKKNT-----------HTYFYTSFAAYIFGLGLTIFIMHIF 312          
BLAST of EY684821 vs. ExPASy Swiss-Prot
Match: HM13_HUMAN (Minor histocompatibility antigen H13 OS=Homo sapiens GN=HM13 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.365e-11
Identity = 54/181 (29.83%), Postives = 75/181 (41.44%), Query Frame = 1
Query:    4 WLVSAHWILNNLLGIAICIAFVSHVRLPNIKICAMLLVCLFVYDIFWVFFSERFFGANVMVSVSTQQASNPVHTVANSLSLPGLQLITKKLELPVKIVFPRNLFGGVTPGGNATDFXXXXXXXXXXXXXXXXXVLCFDHRKSTNTVSLFDLHYSKGHKYLWNALPGYAIGL-VTAFICRIF 543
            +L+  HWI NNL G+A  +  V  + L N+    +LL  LF+YD+FWV      FG NVMV+V+                        K  E P+K+VFP++L   +  G  A +F                 +L FD     NT           H Y + +   Y  GL +T FI  IF
Sbjct:  176 YLLRKHWIANNLFGLAFSLNGVELLHLNNVSTGCILLGGLFIYDVFWV------FGTNVMVTVA------------------------KSFEAPIKLVFPQDL---LEKGLEANNFAMLGLGDVVIPGIFIALLLRFDISLKKNT-----------HTYFYTSFAAYIFGLGLTIFIMHIF 312          
The following BLAST results are available for this feature:
BLAST of EY684821 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
PSL4_HUMAN2.325e-2043.56Signal peptide peptidase-like 3 OS=Homo sapiens GN... [more]
PSL4_MOUSE1.507e-1942.57Signal peptide peptidase-like 3 OS=Mus musculus GN... [more]
HM13_MOUSE3.365e-1130.39Minor histocompatibility antigen H13 OS=Mus muscul... [more]
HM13_HUMAN3.365e-1129.83Minor histocompatibility antigen H13 OS=Homo sapie... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C2-003-004-B02-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684821 ID=EY684821; Name=EY684821; organism=Citrus sinensis; type=EST; length=902bp
GCTTGGCTGGTTTCTGCTCATTGGATATTAAACAACTTGTTGGGAATTGC
AATCTGTATTGCATTTGTGAGCCATGTGCGCCTTCCAAACATCAAAATAT
GTGCGATGCTCCTTGTATGTTTATTCGTATATGACATATTCTGGGTTTTC
TTCTCAGAGAGATTTTTTGGGGCAAATGTCATGGTATCAGTATCAACACA
ACAGGCATCAAATCCCGTTCACACAGTGGCTAATAGTTTGAGCCTTCCAG
GGTTGCAACTAATAACGAAGAAGCTGGAATTGCCAGTCAAAATTGTATTT
CCCAGGAACTTGTTTGGTGGAGTGACTCCTGGAGGAAATGCCACAGACTT
CATGATGCTTGGTCTTGGTGACATGGCAATGCCTGCCATGCTTTTAGCAT
TGGTCCTCTGCTTCGATCATCGAAAGAGCACCAATACAGTTAGTCTTTTT
GATTTACATTATTCAAAAGGCCACAAATACTTATGGAATGCCCTTCCCGG
ATATGCCATTGGACTCGTAACTGCCTTTATCTGCCGAATTTTTGACTCCC
TCACCTCAACCATGCCCATTCAAAATCTGGGGGCATCTACATCTCAGGCA
ACGTCGTTCGCAAGCCAGAGGGTGCCAACCCACTAATCAATAATCACAAA
AAACAACGTTCTATTCGCAACACAACAAACACCCACGCCACACAATACGA
ACACACAAACATCTAACCGAAGAAGTAGACTTGCAGACGATAAAAAACCG
TAGCAACACCACACGGACCGACCGCACCAAAGCGAAAACCACTGCACCAG
CTCAACCGAAGAAACAAAACAAACCAACAACGACAAACGCACCACAGAGG
CACAAACAACCCACAGCACGACGCAACCCATCGACGAATGGGCACAAGAA
CC
back to top