EY684820

Overview
NameEY684820
Unique NameEY684820
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length908
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684820 vs. ExPASy Swiss-Prot
Match: RS8_ORYSJ (40S ribosomal protein S8 OS=Oryza sativa subsp. japonica GN=RPS8 PE=2 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 1.520e-27
Identity = 62/80 (77.50%), Postives = 63/80 (78.75%), Query Frame = 2
Query:   80 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRIL 319
            MGISRDSMH                 YELGRQPANTKLSSNKTVRR+RVRGGNVKWRALRLDTGNYSWGSEAVTRKTRIL
Sbjct:    1 MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRIL 80          
BLAST of EY684820 vs. ExPASy Swiss-Prot
Match: RS8_MAIZE (40S ribosomal protein S8 OS=Zea mays GN=RPS8 PE=2 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 1.520e-27
Identity = 62/80 (77.50%), Postives = 63/80 (78.75%), Query Frame = 2
Query:   80 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRIL 319
            MGISRDSMH                 YELGRQPANTKLSSNKTVRR+RVRGGNVKWRALRLDTGNYSWGSEAVTRKTRIL
Sbjct:    1 MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRIL 80          
BLAST of EY684820 vs. ExPASy Swiss-Prot
Match: RS8_PRUAR (40S ribosomal protein S8 OS=Prunus armeniaca GN=RPS8 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 5.776e-27
Identity = 61/80 (76.25%), Postives = 63/80 (78.75%), Query Frame = 2
Query:   80 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRIL 319
            MGISRDSMH                 YELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGN+SWGSEAVTRKTR+L
Sbjct:    1 MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNFSWGSEAVTRKTRLL 80          
BLAST of EY684820 vs. ExPASy Swiss-Prot
Match: RS82_ARATH (40S ribosomal protein S8-2 OS=Arabidopsis thaliana GN=RPS8B PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 9.852e-27
Identity = 61/80 (76.25%), Postives = 63/80 (78.75%), Query Frame = 2
Query:   80 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRIL 319
            MGISRDS+H                 YELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGN+SWGSEAVTRKTRIL
Sbjct:    1 MGISRDSIHKRRATGGKQKMWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNFSWGSEAVTRKTRIL 80          
BLAST of EY684820 vs. ExPASy Swiss-Prot
Match: RS81_ARATH (40S ribosomal protein S8-1 OS=Arabidopsis thaliana GN=RPS8A PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.195e-26
Identity = 59/80 (73.75%), Postives = 62/80 (77.50%), Query Frame = 2
Query:   80 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRIL 319
            MGISRDS+H                 YE+GRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEA TRKTR+L
Sbjct:    1 MGISRDSIHKRRATGGKQKQWRKKRKYEMGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEATTRKTRVL 80          
BLAST of EY684820 vs. ExPASy Swiss-Prot
Match: RS8_THEPA (40S ribosomal protein S8 OS=Theileria parva GN=RPS8 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 7.077e-17
Identity = 45/80 (56.25%), Postives = 55/80 (68.75%), Query Frame = 2
Query:   80 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRIL 319
            MGISRDS H                 YELGR  +NTKL S K VR++R RGGN+K+RALRLD+GN+SWGS+ VTRKTR++
Sbjct:    1 MGISRDSRHKRRLTGGRYPVHKKKRKYELGRPSSNTKLGS-KLVRKVRCRGGNLKFRALRLDSGNFSWGSQNVTRKTRVM 79          
BLAST of EY684820 vs. ExPASy Swiss-Prot
Match: RS8_THEAN (40S ribosomal protein S8 OS=Theileria annulata GN=RPS8 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.577e-16
Identity = 44/80 (55.00%), Postives = 55/80 (68.75%), Query Frame = 2
Query:   80 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRIL 319
            MGISRDS H                 YELGR  +NTKL S + VR++R RGGN+K+RALRLD+GN+SWGS+ VTRKTR++
Sbjct:    1 MGISRDSRHKRRLTGGRYPVHKKKRKYELGRPSSNTKLGS-RLVRKVRCRGGNLKFRALRLDSGNFSWGSQNVTRKTRVM 79          
BLAST of EY684820 vs. ExPASy Swiss-Prot
Match: RS8_ICTPU (40S ribosomal protein S8 OS=Ictalurus punctatus GN=rps8 PE=2 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 3.512e-16
Identity = 44/80 (55.00%), Postives = 51/80 (63.75%), Query Frame = 2
Query:   80 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRIL 319
            MGISRD+ H                 YELGR P+NTKL   K +  +RVRGGN K+RALRLD GN+SWGSE  TRKTRI+
Sbjct:    1 MGISRDNWHKRRKTGGKRKPVHKKRKYELGRPPSNTKLGP-KRIHTVRVRGGNKKYRALRLDVGNFSWGSECCTRKTRII 79          
BLAST of EY684820 vs. ExPASy Swiss-Prot
Match: RS8_YEAST (40S ribosomal protein S8 OS=Saccharomyces cerevisiae GN=RPS8A PE=1 SV=3)

HSP 1 Score: 84.7297 bits (208), Expect = 7.825e-16
Identity = 41/81 (50.62%), Postives = 53/81 (65.43%), Query Frame = 2
Query:   80 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILG 322
            MGISRDS H                 +ELGRQPANTK+ + K +  +R RGGN K+RALR++TGN+SW SE +++KTRI G
Sbjct:    1 MGISRDSRHKRSATGAKRAQFRKKRKFELGRQPANTKIGA-KRIHSVRTRGGNKKYRALRIETGNFSWASEGISKKTRIAG 80          
BLAST of EY684820 vs. ExPASy Swiss-Prot
Match: RS8_GRIJA (40S ribosomal protein S8 OS=Griffithsia japonica GN=RPS8 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.825e-16
Identity = 45/80 (56.25%), Postives = 53/80 (66.25%), Query Frame = 2
Query:   80 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRIL 319
            MGISRDS H                 YELGRQPA TK+   K VR +RVRGGN+K RALRL++GN++WGSEA T K+RIL
Sbjct:    1 MGISRDSRHKRRLTGGKHPYTCKKRKYELGRQPAMTKIGG-KLVRTVRVRGGNLKSRALRLESGNFAWGSEAFTSKSRIL 79          
The following BLAST results are available for this feature:
BLAST of EY684820 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RS8_ORYSJ1.520e-2777.5040S ribosomal protein S8 OS=Oryza sativa subsp. ja... [more]
RS8_MAIZE1.520e-2777.5040S ribosomal protein S8 OS=Zea mays GN=RPS8 PE=2 ... [more]
RS8_PRUAR5.776e-2776.2540S ribosomal protein S8 OS=Prunus armeniaca GN=RP... [more]
RS82_ARATH9.852e-2776.2540S ribosomal protein S8-2 OS=Arabidopsis thaliana... [more]
RS81_ARATH2.195e-2673.7540S ribosomal protein S8-1 OS=Arabidopsis thaliana... [more]
RS8_THEPA7.077e-1756.2540S ribosomal protein S8 OS=Theileria parva GN=RPS... [more]
RS8_THEAN1.577e-1655.0040S ribosomal protein S8 OS=Theileria annulata GN=... [more]
RS8_ICTPU3.512e-1655.0040S ribosomal protein S8 OS=Ictalurus punctatus GN... [more]
RS8_YEAST7.825e-1650.6240S ribosomal protein S8 OS=Saccharomyces cerevisi... [more]
RS8_GRIJA7.825e-1656.2540S ribosomal protein S8 OS=Griffithsia japonica G... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-004-B01-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684820 ID=EY684820; Name=EY684820; organism=Citrus sinensis; type=EST; length=908bp
CCACGCGTCCGGAGCGGGAGCAAGGAGCACATTACGTTACAGTGAGCAGC
GCCGCAGCAGCAGCTACAGCTCAGCCAAGATGGGTATTTCCAGAGATTCA
ATGCATAAGAGACGCGCCACTGGTGGCAAGAAGAAAGCTTGGAGGAAGAA
GCGCAAGTACGAACTTGGTCGTCAGCCTGCAAATACCAAGCTCTCTAGCA
ACAAGACTGTACGGAGAATTCGTGTCAGAGGAGGCAATGTGAAGTGGAGG
GCCCTGAGACTGGACACTGGGAACTATTCCTGGGGTAGCGAGGCTGTCAC
CCGCAAGACCCGTATCCTGGGTGGTGGTGAAGCTGCACCGGGAACTGATC
AAGGCCAGCCCACCAAAGCAAAGCGGCACGCCGGCAGACGCGACCCCACA
CCGGGGGGGGGGGGGGGGGGCGGAAGCACCAGACCCCCAAGACCACAGGC
GCACCACCCTCACCCGACCGGACCAACAGATCCCCCCCCCCACCCGCAAC
CACCACAAGCCGCCTCCACTGGACGAACACGACAGGAGGGGCGGGACCGA
GGACCGAAGCGCACAAGACGCCAGCAGCCCCCGACAGGCCGCGCACACCG
CCGCCGGGCGCGACAGCCACGAGCACACCGCGACGGGACCCCCGCACCGA
CACCGCCGACACCACACAGGCAGAAAGCAGAGCGCCCGCGAACCAAGCAC
CCCAAGCCGGACCCAACGCCCGAGGGACAGCCGACGCAGGCCCGGAGGCC
ACACAGCCAACCGCGGAACACCAGCGGATACAACGGCAGGCGACCACAAG
AGCGGCCGCGCAGGAACCGACGAAAAAACCCCGACACGCCCGCCCCGAAG
GCGCGCACAACACAAACGCGCGGAACGAGGACAGAGAAGCCGACGGACAA
ACAGACGG
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