EY684812

Overview
NameEY684812
Unique NameEY684812
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length863
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684812 vs. ExPASy Swiss-Prot
Match: YTHD2_MACFA (YTH domain family protein 2 OS=Macaca fascicularis GN=YTHDF2 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.148e-13
Identity = 36/60 (60.00%), Postives = 44/60 (73.33%), Query Frame = 3
Query:    9 PNSLLKHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDHPSKTCILDDFGFYETRQK 188
            PNS L+HI LENNENKPVTNSRDTQE+ LE+  +++KI   +   T I DDF  YE RQ+
Sbjct:  506 PNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQVLKIIASYKHTTSIFDDFSHYEKRQE 565          
BLAST of EY684812 vs. ExPASy Swiss-Prot
Match: YTHD2_HUMAN (YTH domain family protein 2 OS=Homo sapiens GN=YTHDF2 PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 1.148e-13
Identity = 36/60 (60.00%), Postives = 44/60 (73.33%), Query Frame = 3
Query:    9 PNSLLKHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDHPSKTCILDDFGFYETRQK 188
            PNS L+HI LENNENKPVTNSRDTQE+ LE+  +++KI   +   T I DDF  YE RQ+
Sbjct:  506 PNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQVLKIIASYKHTTSIFDDFSHYEKRQE 565          
BLAST of EY684812 vs. ExPASy Swiss-Prot
Match: YTHD2_BOVIN (YTH domain family protein 2 OS=Bos taurus GN=YTHDF2 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.148e-13
Identity = 36/60 (60.00%), Postives = 44/60 (73.33%), Query Frame = 3
Query:    9 PNSLLKHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDHPSKTCILDDFGFYETRQK 188
            PNS L+HI LENNENKPVTNSRDTQE+ LE+  +++KI   +   T I DDF  YE RQ+
Sbjct:  507 PNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQVLKIIASYKHTTSIFDDFSHYEKRQE 566          
BLAST of EY684812 vs. ExPASy Swiss-Prot
Match: YTHD1_HUMAN (YTH domain family protein 1 OS=Homo sapiens GN=YTHDF1 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.364e-13
Identity = 34/60 (56.67%), Postives = 44/60 (73.33%), Query Frame = 3
Query:    9 PNSLLKHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDHPSKTCILDDFGFYETRQK 188
            PN+ L+HI LENN+NKPVTNSRDTQE+ LE+  +++KI   +   T I DDF  YE RQ+
Sbjct:  485 PNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLKIISSYKHTTSIFDDFAHYEKRQE 544          
BLAST of EY684812 vs. ExPASy Swiss-Prot
Match: YTHD1_MOUSE (YTH domain family protein 1 OS=Mus musculus GN=Ythdf1 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.700e-13
Identity = 34/60 (56.67%), Postives = 44/60 (73.33%), Query Frame = 3
Query:    9 PNSLLKHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDHPSKTCILDDFGFYETRQK 188
            PN+ L+HI LENN+NKPVTNSRDTQE+ LE+  +++KI   +   T I DDF  YE RQ+
Sbjct:  485 PNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLKIIASYKHTTSIFDDFSHYEKRQE 544          
BLAST of EY684812 vs. ExPASy Swiss-Prot
Match: YTHD3_PONAB (YTH domain family protein 3 OS=Pongo abelii GN=YTHDF3 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.658e-12
Identity = 34/60 (56.67%), Postives = 43/60 (71.67%), Query Frame = 3
Query:    9 PNSLLKHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDHPSKTCILDDFGFYETRQK 188
            PN+ L+HI LENN+NKPVTNSRDTQE+ LE+  +++KI       T I DDF  YE RQ+
Sbjct:  512 PNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLKIIATFKHTTSIFDDFAHYEKRQE 571          
BLAST of EY684812 vs. ExPASy Swiss-Prot
Match: YTHD3_MOUSE (YTH domain family protein 3 OS=Mus musculus GN=Ythdf3 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.658e-12
Identity = 34/60 (56.67%), Postives = 43/60 (71.67%), Query Frame = 3
Query:    9 PNSLLKHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDHPSKTCILDDFGFYETRQK 188
            PN+ L+HI LENN+NKPVTNSRDTQE+ LE+  +++KI       T I DDF  YE RQ+
Sbjct:  512 PNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLKIIATFKHTTSIFDDFAHYEKRQE 571          
BLAST of EY684812 vs. ExPASy Swiss-Prot
Match: YTHD3_HUMAN (YTH domain family protein 3 OS=Homo sapiens GN=YTHDF3 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.658e-12
Identity = 34/60 (56.67%), Postives = 43/60 (71.67%), Query Frame = 3
Query:    9 PNSLLKHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDHPSKTCILDDFGFYETRQK 188
            PN+ L+HI LENN+NKPVTNSRDTQE+ LE+  +++KI       T I DDF  YE RQ+
Sbjct:  512 PNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLKIIATFKHTTSIFDDFAHYEKRQE 571          
The following BLAST results are available for this feature:
BLAST of EY684812 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
YTHD2_MACFA1.148e-1360.00YTH domain family protein 2 OS=Macaca fascicularis... [more]
YTHD2_HUMAN1.148e-1360.00YTH domain family protein 2 OS=Homo sapiens GN=YTH... [more]
YTHD2_BOVIN1.148e-1360.00YTH domain family protein 2 OS=Bos taurus GN=YTHDF... [more]
YTHD1_HUMAN4.364e-1356.67YTH domain family protein 1 OS=Homo sapiens GN=YTH... [more]
YTHD1_MOUSE5.700e-1356.67YTH domain family protein 1 OS=Mus musculus GN=Yth... [more]
YTHD3_PONAB1.658e-1256.67YTH domain family protein 3 OS=Pongo abelii GN=YTH... [more]
YTHD3_MOUSE1.658e-1256.67YTH domain family protein 3 OS=Mus musculus GN=Yth... [more]
YTHD3_HUMAN1.658e-1256.67YTH domain family protein 3 OS=Homo sapiens GN=YTH... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C2-003-004-A03-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684812 ID=EY684812; Name=EY684812; organism=Citrus sinensis; type=EST; length=863bp
CCACGCGTCCGAATAGTTTGTTGAAGCACATTACTCTCGAGAATAATGAG
AACAAGCCTGTCACTAACAGTAGGGACACTCAAGAGATCAAGTTAGAGCA
GGGACTTAAATTGATCAAAATATTCAAGGATCACCCAAGTAAAACGTGCA
TTCTGGATGATTTTGGGTTTTATGAGACTCGCCAGAAAACCATTCAGGAA
AAGAAGGCTAAACAACAGCAGTTCCAGAAACAGGTATGGGAAGGAAAGCC
TGCTGAGGAGAAGAAAGAATTGGCTAATGGGGAACTAAAGACACAGAAGT
CATCGGAGGTTGCCTCTGATTTGGTCGAAGAGCGTACTACAACAGTTCAG
AGTAATGGGGACCTAAGACTCTCTGAGAATGGATCAGTTGCAAAAACTGG
AGATGCCCACAAGGGAAGTAAACCAGTTGTAGTTTCAGAGAAGGTTATAT
TGGCAAATGGGGTTGCAAATGGTTGTTAGGCTTAGCTGCACAGGAAGGCG
GTCTGATTTTATTGGAGCTCATTGTGAGGAGTTCTGTCAGAAAGTTTTGG
CTGGGTTCAAACATCGATAAAACAATTCTGGGGCAGGTCTATGGGTGCAA
TACCGCCTCATCAATGAACCAGCCCGACTGGCTAGCAGAAACAAATCCAT
GCAGAAGACCCATGAGACCAAGTCCGGCACAGACAAGCCAAGGACAAGAA
GACGCACGACGAACAGAACGCGAAGAAACAAACACCAGAACGCCCCCCCC
CCAGCTACGTCCCGCCCCAACGGCACCACCAACCACCCAACCCGCCGCAA
ACCCCCTCCCTGCCCAGCACGTCAGAACGCCACAGGCGACGCAGAGCCGC
ACGACGCGACCGA
back to top