EY684811

Overview
NameEY684811
Unique NameEY684811
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length946
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY684811 vs. ExPASy Swiss-Prot
Match: C3H38_ARATH (Zinc finger CCCH domain-containing protein 38 OS=Arabidopsis thaliana GN=At3g18640 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 3.254e-20
Identity = 52/82 (63.41%), Postives = 60/82 (73.17%), Query Frame = 1 
Query:   43 LRAFWLPQAEFVKDLLKPTWKESHIIKHAYENIVNKVLDKVIGTMQGAANIPQTQEKIDQYLSFSKSKLTKLVQAYVEKSRK 288
            +RAF     E VK+LLKP WKE  + K  Y+NIV KV +KV GTMQ + N+PQTQEKID YLS SK KLTKLVQAYV K +K
Sbjct:  595 MRAFKFALVEVVKELLKPAWKEGKLNKDGYKNIVKKVAEKVTGTMQ-SGNVPQTQEKIDHYLSASKPKLTKLVQAYVGKIKK 675
[Close]
BLAST of EY684811 vs. ExPASy Swiss-Prot
Match: C3H55_ORYSJ (Zinc finger CCCH domain-containing protein 55 OS=Oryza sativa subsp. japonica GN=Os08g0135800 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.671e-16
Identity = 45/82 (54.88%), Postives = 58/82 (70.73%), Query Frame = 1 
Query:   43 LRAFWLPQAEFVKDLLKPTWKESHIIKHAYENIVNKVLDKVIGTMQGAANIPQTQEKIDQYLSFSKSKLTKLVQAYVEKSRK 288
            L+ F L  A+FVKD LKPTWKE  + +  ++ IV KV+DKV  T++   N PQT+EKID Y+S+S+ KL KLVQAYV K  K
Sbjct:  878 LKMFKLALADFVKDALKPTWKEGQMSREVHKTIVKKVVDKVTTTVE---NTPQTKEKIDIYMSYSREKLNKLVQAYVGKYAK 956
[Close]
BLAST of EY684811 vs. ExPASy Swiss-Prot
Match: C3H27_ARATH (Zinc finger CCCH domain-containing protein 27 OS=Arabidopsis thaliana GN=FES1 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 3.606e-11
Identity = 32/90 (35.56%), Postives = 50/90 (55.56%), Query Frame = 1 
Query:   19 RGALSLELLRAFWLPQAEFVKDLLKPTWKESHIIKHAYENIVNKVLDKVIGTMQGAANIPQTQEKIDQYLSFSKSKLTKLVQAYVEKSRK 288
            R    ++++R F     E +K++LKP W+E  + K  +  IV K  +KV+G       +P   E +DQYL  S +++ KLV+ YVEK  K
Sbjct:  497 RSDAGMKVMRLFRTAVVETIKEMLKPLWREGRLTKDVHNMIVKKAAEKVVGAAVQFHQVPTDTESVDQYLGLSGTRIVKLVEGYVEKYGK 586
The following BLAST results are available for this feature:
BLAST of EY684811 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
C3H38_ARATH3.254e-2063.41Zinc finger CCCH domain-containing protein 38 OS=A... [more]
C3H55_ORYSJ1.671e-1654.88Zinc finger CCCH domain-containing protein 55 OS=O... [more]
C3H27_ARATH3.606e-1135.56Zinc finger CCCH domain-containing protein 27 OS=A... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C2-003-004-A02-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684811 ID=EY684811; Name=EY684811; organism=Citrus sinensis; type=EST; length=946bp
ACCACGCTGACGCGGACGCGAGGAGCTTTGTCATTAGAGTTACTTCGAGC
ATTTTGGCTACCGCAGGCGGAGTTTGTTAAGGATCTTCTAAAACCCACAT
GGAAAGAAAGTCATATTATCAAACATGCTTACGAAAACATAGTGAACAAA
GTACTGGACAAGGTTATTGGTACTATGCAGGGGGCTGCTAATATTCCTCA
AACGCAGGAGAAGATTGATCAGTATTTGTCATTTTCGAAATCTAAGCTTA
CCAAACTTGTTCAGGCTTATGTGGAAAAATCACGGAAGGGCTGAATGAAG
CATGTATCTTTTACTGGCCATATTTCAAATTTTTCCCTGATTCTCAACAA
CTGCCATGCTGACCACCAGCATCCGCTCCATCCCGACGCAACCGGCACGG
GCGGGAGAACAACCGATACACCCATACGACACGCCGCAAAAGCCCATTAC
AAGCCCCCACCAACAACCGCAACCGACCACACCGCCCCAATACCCCACCC
GACCCAGGGAAAAGCGCCCCCACCCGGACCAGAGCAACCCAGAGGCCACG
CCAGCCGACAAGCAAAACAGAAAAACAAAACCGAACGAACCACCCCTCCA
AACCAAGAAAACGAGAACAGAAAGCAAAAGTAGGCACAAGCCAACCACAA
CCAACGCACCACCTACCACACACCAGGCACCAGGAGCCTACCCCACCACC
CTGCACGCTAATCCCACACCAAGTGCGACCGCCGCCGACCAGAACCGAAG
CCCACGCACAACACACACGCCCACGAGCCCCAGCCACACCCCCCACACCG
CAAAGCCCGTCAACCACCCCACGCCACCCGCGGACACAACGCAGGACCCG
CAGGTCAAGGAGCGCAGACAGAGACCCATGAGGCACGGAGGCCCAGACCG
CCAGACAACCCCCGAACGCACGGCGAGGGCGAGGACGCAATCACGC
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